Last updated on 2018-06-17 19:49:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1-1 | 3.45 | 27.52 | 30.97 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1-1 | 2.45 | 21.37 | 23.82 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1-1 | 73.61 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1-1 | 72.34 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1.1-1 | 7.00 | 74.00 | 81.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.1-1 | 3.66 | 26.52 | 30.18 | ERROR | |
| r-patched-solaris-x86 | 1.1.1-1 | 95.60 | NOTE | |||
| r-release-linux-x86_64 | 1.1.1-1 | 2.78 | 25.71 | 28.49 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.1.1-1 | 8.00 | 72.00 | 80.00 | NOTE | |
| r-release-osx-x86_64 | 1.1.1-1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.1-1 | 3.00 | 71.00 | 74.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.1.1-1 | NOTE |
Version: 1.1.1-1
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.1-1
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
plot.drBootSpline plot.drFit plot.drFitSpline plot.gcBootSpline
plot.gcFit plot.gcFitModel plot.gcFitSpline summary.drBootSpline
summary.drFit summary.drFitSpline summary.gcBootSpline summary.gcFit
summary.gcFitModel summary.gcFitSpline
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1.1-1
Check: R code for possible problems
Result: NOTE
drBootSpline: no visible global function definition for ‘is’
drBootSpline: no visible global function definition for ‘sd’
drFit: no visible global function definition for ‘is’
drFitSpline: no visible global function definition for ‘is’
drFitSpline: no visible global function definition for ‘smooth.spline’
drFitSpline: no visible global function definition for ‘predict’
gcBootSpline: no visible global function definition for ‘is’
gcFit: no visible global function definition for ‘is’
gcFit: no visible global function definition for ‘plot’
gcFit: no visible global function definition for ‘title’
gcFit: no visible global function definition for ‘legend’
gcFit: no visible global function definition for ‘graphics.off’
gcFitModel: no visible global function definition for ‘is’
gcFitModel: no visible global function definition for ‘as.formula’
gcFitModel: no visible global function definition for ‘nls’
gcFitModel: no visible global function definition for ‘fitted.values’
gcFitSpline: no visible global function definition for ‘is’
gcFitSpline: no visible global function definition for ‘smooth.spline’
gcFitSpline: no visible global function definition for ‘predict’
gcFitSpline: no visible global function definition for ‘lowess’
grofit: no visible global function definition for ‘is’
low.integrate: no visible global function definition for
‘smooth.spline’
low.integrate : f: no visible global function definition for ‘predict’
low.integrate: no visible global function definition for ‘integrate’
plot.drBootSpline : empty.plot: no visible global function definition
for ‘plot’
plot.drBootSpline : empty.plot: no visible global function definition
for ‘lines’
plot.drBootSpline: no visible global function definition for ‘colors’
plot.drBootSpline: no visible global function definition for ‘dev.new’
plot.drBootSpline: no visible global function definition for ‘plot’
plot.drBootSpline: no visible global function definition for ‘points’
plot.drBootSpline: no visible global function definition for ‘hist’
plot.drFit: no visible global function definition for ‘plot’
plot.drFit: no visible global function definition for ‘title’
plot.drFitSpline: no visible global function definition for ‘colors’
plot.drFitSpline: no visible global function definition for ‘plot’
plot.drFitSpline: no visible global function definition for ‘points’
plot.drFitSpline: no visible global function definition for ‘lines’
plot.gcBootSpline : empty.plot: no visible global function definition
for ‘plot’
plot.gcBootSpline : empty.plot: no visible global function definition
for ‘lines’
plot.gcBootSpline: no visible global function definition for ‘colors’
plot.gcBootSpline: no visible global function definition for ‘plot’
plot.gcBootSpline: no visible global function definition for ‘points’
plot.gcBootSpline: no visible global function definition for ‘dev.new’
plot.gcBootSpline: no visible global function definition for ‘par’
plot.gcBootSpline: no visible global function definition for ‘hist’
plot.gcFit: no visible global function definition for ‘colors’
plot.gcFit: no visible global function definition for ‘dev.new’
plot.gcFit: no visible global function definition for ‘plot’
plot.gcFit: no visible global function definition for ‘legend’
plot.gcFit: no visible global function definition for ‘title’
plot.gcFitModel: no visible global function definition for ‘colors’
plot.gcFitModel: no visible global function definition for ‘points’
plot.gcFitModel: no visible global function definition for ‘lines’
plot.gcFitModel: no visible global function definition for ‘plot’
plot.gcFitSpline: no visible global function definition for ‘colors’
plot.gcFitSpline: no visible global function definition for ‘points’
plot.gcFitSpline: no visible global function definition for ‘lines’
plot.gcFitSpline: no visible global function definition for ‘plot’
ran.data: no visible global function definition for ‘runif’
ran.data: no visible global function definition for ‘rnorm’
summary.drBootSpline: no visible global function definition for ‘sd’
summary.gcBootSpline: no visible global function definition for ‘sd’
Undefined global functions or variables:
as.formula colors dev.new fitted.values graphics.off hist integrate
is legend lines lowess nls par plot points predict rnorm runif sd
smooth.spline title
Consider adding
importFrom("grDevices", "colors", "dev.new", "graphics.off")
importFrom("graphics", "hist", "legend", "lines", "par", "plot",
"points", "title")
importFrom("methods", "is")
importFrom("stats", "as.formula", "fitted.values", "integrate",
"lowess", "nls", "predict", "rnorm", "runif", "sd",
"smooth.spline")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.1-1
Check: examples
Result: ERROR
Running examples in ‘grofit-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: drBootSpline
> ### Title: Function to create a bootstrap sample of splines fitted to
> ### dose-response curves.
> ### Aliases: drBootSpline
>
> ### ** Examples
>
> x <- 1:50
> y <- 30/(1+exp(-0.5*(25-x)))+rnorm(50)
> TestRun <- drBootSpline(x,y,"ID",grofit.control(nboot.dr=50))
=== Bootstrapping of dose response curve ==========
--- EC 50 -----------------------------------------
Mean : 24.62002002002 StDev : 0.327928793460531
90% CI: 24.0805771547774 90% CI: 25.1594628852626
95% CI: 23.9772795848374 95% CI: 25.2627604552027
> print(summary(TestRun))
Length Class Mode
raw.conc 41 -none- numeric
raw.test 41 -none- numeric
drID 1 -none- character
boot.conc 50000 -none- numeric
boot.test 50000 -none- numeric
boot.drSpline 50 -none- list
ec50.boot 50 -none- numeric
bootFlag 1 -none- logical
control 16 grofit.control list
> plot(TestRun)
Error in xy.coords(x, y, xlabel, ylabel, log) :
'x' is a list, but does not have components 'x' and 'y'
Calls: plot -> plot.default -> xy.coords
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64