CRAN Package Check Results for Package qrfactor

Last updated on 2018-06-17 19:49:54 CEST.

Check Details

Version: 1.4
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.qrfactor print.qrfactor qrfactor.default summary.qrfactor
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.4
Check: R code for possible problems
Result: NOTE
    plot.qrfactor : sp.label: no visible global function definition for
     ‘coordinates’
    plot.qrfactor: no visible global function definition for ‘slot’
    plot.qrfactor: no visible global function definition for ‘slot<-’
    plot.qrfactor: no visible global function definition for ‘text’
    plot.qrfactor: no visible global function definition for ‘layout’
    plot.qrfactor: no visible global function definition for ‘kmeans’
    plot.qrfactor: no visible global function definition for ‘polygon’
    plot.qrfactor: no visible global function definition for ‘points’
    plot.qrfactor: no visible global function definition for ‘mahalanobis’
    plot.qrfactor: no visible global function definition for ‘qqplot’
    plot.qrfactor: no visible global function definition for ‘qchisq’
    plot.qrfactor: no visible global function definition for ‘ppoints’
    plot.qrfactor: no visible global function definition for ‘spplot’
    plot.qrfactor: no visible global function definition for ‘bpy.colors’
    plot.qrfactor: no visible global function definition for ‘gray.colors’
    plot.qrfactor: no visible global function definition for ‘aggregate’
    plot.qrfactor: no visible global function definition for ‘aov’
    plot.qrfactor: no visible global function definition for ‘kruskal.test’
    plot.qrfactor: no visible global function definition for ‘dist’
    plot.qrfactor: no visible global function definition for ‘hclust’
    plot.qrfactor: no visible global function definition for ‘rect.hclust’
    plot.qrfactor: no visible global function definition for ‘na.omit’
    plot.qrfactor: no visible global function definition for ‘readOGR’
    plot.qrfactor: no visible global function definition for ‘wilcox.test’
    plot.qrfactor: no visible global function definition for ‘TukeyHSD’
    rq: no visible global function definition for ‘readOGR’
    rq: no visible global function definition for ‘slot’
    rq: no visible global function definition for ‘read.csv’
    rq: no visible global function definition for ‘read.table’
    rq: no visible global function definition for ‘slot<-’
    rq: no visible global function definition for ‘na.omit’
    rq: no visible global function definition for ‘cor’
    rq: no visible global function definition for ‘kmeans’
    Undefined global functions or variables:
     TukeyHSD aggregate aov bpy.colors coordinates cor dist gray.colors
     hclust kmeans kruskal.test layout mahalanobis na.omit points polygon
     ppoints qchisq qqplot read.csv read.table readOGR rect.hclust slot
     slot<- spplot text wilcox.test
    Consider adding
     importFrom("grDevices", "gray.colors")
     importFrom("graphics", "layout", "points", "polygon", "text")
     importFrom("methods", "slot", "slot<-")
     importFrom("stats", "TukeyHSD", "aggregate", "aov", "cor", "dist",
     "hclust", "kmeans", "kruskal.test", "mahalanobis",
     "na.omit", "ppoints", "qchisq", "qqplot", "rect.hclust",
     "wilcox.test")
     importFrom("utils", "read.csv", "read.table")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.4
Check: tests
Result: ERROR
     Running ‘MDS.R’ [6s/9s]
    Running the tests in ‘tests/MDS.R’ failed.
    Complete output:
     > library(qrfactor)
     Loading required package: mvoutlier
     Loading required package: sgeostat
     sROC 0.1-2 loaded
     Loading required package: mgraph
     Loading required package: rgdal
     Loading required package: sp
     rgdal: version: 1.3-2, (SVN revision 755)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 2.3.0, released 2018/05/04
     Path to GDAL shared files: /usr/share/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ.4 runtime: Rel. 5.1.0, June 1st, 2018, [PJ_VERSION: 510]
     Path to PROJ.4 shared files: (autodetected)
     Linking to sp version: 1.3-1
     Loading required package: pvclust
     Loading required package: cluster
     Loading required package: maptools
     Checking rgeos availability: FALSE
     Note: when rgeos is not available, polygon geometry computations in maptools depend on gpclib,
     which has a restricted licence. It is disabled by default;
     to enable gpclib, type gpclibPermit()
     > #data must be numeric, avoid using categorical and characters
     > data(UScereal, package="MASS")
     > variables=c("calories","protein","sodium","carbo","sugars","potassium")
     > data=UScereal[variables]
     > #Multi dimensional scaling can be simulated as:
     > plot(qrfactor(data,scale='n'),plot="r",type="mds",factors=c(1,2))
     Error in UseMethod("qrfactor") :
     no applicable method for 'qrfactor' applied to an object of class "data.frame"
     Calls: plot -> qrfactor
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.4
Check: tests
Result: ERROR
     Running ‘MDS.R’ [5s/7s]
    Running the tests in ‘tests/MDS.R’ failed.
    Complete output:
     > library(qrfactor)
     Loading required package: mvoutlier
     Loading required package: sgeostat
     sROC 0.1-2 loaded
     Loading required package: mgraph
     Loading required package: rgdal
     Loading required package: sp
     rgdal: version: 1.3-2, (SVN revision 755)
     Geospatial Data Abstraction Library extensions to R successfully loaded
     Loaded GDAL runtime: GDAL 2.3.0, released 2018/05/04
     Path to GDAL shared files: /usr/share/gdal
     GDAL binary built with GEOS: TRUE
     Loaded PROJ.4 runtime: Rel. 5.1.0, June 1st, 2018, [PJ_VERSION: 510]
     Path to PROJ.4 shared files: (autodetected)
     Linking to sp version: 1.3-1
     Loading required package: pvclust
     Loading required package: cluster
     Loading required package: maptools
     Checking rgeos availability: FALSE
     Note: when rgeos is not available, polygon geometry computations in maptools depend on gpclib,
     which has a restricted licence. It is disabled by default;
     to enable gpclib, type gpclibPermit()
     > #data must be numeric, avoid using categorical and characters
     > data(UScereal, package="MASS")
     > variables=c("calories","protein","sodium","carbo","sugars","potassium")
     > data=UScereal[variables]
     > #Multi dimensional scaling can be simulated as:
     > plot(qrfactor(data,scale='n'),plot="r",type="mds",factors=c(1,2))
     Error in UseMethod("qrfactor") :
     no applicable method for 'qrfactor' applied to an object of class "data.frame"
     Calls: plot -> qrfactor
     Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64