Last updated on 2018-06-17 19:49:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.13 | 3.40 | 26.45 | 29.85 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.13 | 2.59 | 21.02 | 23.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.13 | 42.34 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.13 | 40.33 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.13 | 8.00 | 42.00 | 50.00 | NOTE | |
| r-patched-linux-x86_64 | 0.13 | 2.73 | 25.27 | 28.00 | ERROR | |
| r-patched-solaris-x86 | 0.13 | 57.80 | NOTE | |||
| r-release-linux-x86_64 | 0.13 | 2.50 | 25.34 | 27.84 | ERROR | |
| r-release-windows-ix86+x86_64 | 0.13 | 7.00 | 43.00 | 50.00 | NOTE | |
| r-release-osx-x86_64 | 0.13 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.13 | 3.00 | 61.00 | 64.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.13 | NOTE |
Version: 0.13
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
AIC.cal anova.lmcal anova.nlscal confint.cal plot.lmcal plot.nlscal
predict.lmcal predict.nlscal print.lmcal print.nlscal residuals.cal
summary.lmcal summary.nlscal
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 0.13
Check: R code for possible problems
Result: NOTE
AIC.cal: no visible global function definition for ‘AIC’
anova.lmcal: no visible global function definition for ‘anova’
anova.nlscal: no visible global function definition for ‘anova’
confint.cal: no visible global function definition for ‘confint’
confint.cal: no visible global function definition for ‘pnorm’
dstat: no visible global function definition for ‘median’
dstat : means: no visible global function definition for ‘t.test’
dstat : medians: no visible global function definition for
‘wilcox.test’
dstat : medians: no visible global function definition for ‘median’
dstat : vars: no visible global function definition for ‘var’
dstat : vars: no visible global function definition for ‘sd’
dstat : rsds: no visible global function definition for ‘var’
dstat : rsds: no visible global function definition for ‘qchisq’
dstat : ranges: no visible global function definition for
‘shapiro.test’
dstat : ranges: no visible global function definition for ‘IQR’
dstat : ranges: no visible global function definition for ‘mad’
dstat: no visible global function definition for ‘var.test’
dstat: no visible global function definition for ‘t.test’
dstat: no visible global function definition for ‘ansari.test’
dstat: no visible global function definition for ‘wilcox.test’
dstat: no visible global function definition for ‘anova’
dstat: no visible global function definition for ‘aov’
dstat: no visible global function definition for ‘kruskal.test’
dstat: no visible global function definition for ‘bartlett.test’
dstat: no visible global function definition for ‘fligner.test’
dstat: no visible global function definition for ‘printCoefmat’
lmcal : weigh: no visible global function definition for ‘lm’
lmcal: no visible global function definition for ‘lm’
lmcal: no visible global function definition for ‘update’
lmcal: no visible global function definition for ‘predict’
lof: no visible global function definition for ‘anova’
nlscal: no visible global function definition for ‘nls’
nlscal: no visible global function definition for ‘loess’
nlscal: no visible global function definition for ‘predict’
nlscal: no visible global function definition for ‘lm’
plot.lmcal : plotcurve: no visible global function definition for
‘plot’
plot.lmcal : plotresiduals: no visible global function definition for
‘plot’
plot.lmcal : plotresiduals: no visible global function definition for
‘abline’
plot.lmcal : plotresiduals: no visible global function definition for
‘loess’
plot.lmcal : plotresiduals: no visible global function definition for
‘predict’
plot.lmcal : plotchronologic: no visible global function definition for
‘plot’
plot.lmcal : plotchronologic: no visible global function definition for
‘abline’
plot.lmcal : plotchronologic: no visible global function definition for
‘loess’
plot.lmcal : plotchronologic: no visible global function definition for
‘fitted’
plot.lmcal : plotqqplot: no visible global function definition for
‘qqnorm’
plot.lmcal : plotqqplot: no visible global function definition for
‘qqline’
plot.lmcal : plotcook: no visible global function definition for ‘plot’
plot.lmcal: no visible global function definition for ‘plot’
plot.lmcal: no visible global function definition for ‘abline’
plot.lmcal: no visible global function definition for ‘mtext’
plot.nlscal : plotcurve: no visible global function definition for
‘plot’
plot.nlscal : plotresiduals: no visible global function definition for
‘plot’
plot.nlscal : plotresiduals: no visible global function definition for
‘abline’
plot.nlscal : plotresiduals: no visible global function definition for
‘loess’
plot.nlscal : plotresiduals: no visible global function definition for
‘predict’
plot.nlscal : plotchronologic: no visible global function definition
for ‘plot’
plot.nlscal : plotchronologic: no visible global function definition
for ‘abline’
plot.nlscal : plotchronologic: no visible global function definition
for ‘loess’
plot.nlscal : plotchronologic: no visible global function definition
for ‘fitted’
plot.nlscal : plotqqplot: no visible global function definition for
‘qqnorm’
plot.nlscal : plotqqplot: no visible global function definition for
‘qqline’
plot.nlscal : plotcook: no visible global function definition for
‘plot’
predict.lmcal : inverse.predict: no visible global function definition
for ‘coefficients’
predict.lmcal: no visible global function definition for ‘predict’
predict.lmcal: no visible global function definition for ‘df.residual’
predict.lmcal: no visible global function definition for ‘qt’
predict.lmcal: no visible global function definition for ‘qnorm’
predict.nlscal : pred: no visible global function definition for
‘predict’
predict.nlscal: no visible global function definition for ‘uniroot’
print.lmcal: no visible global function definition for ‘AIC’
print.lmcal: no visible global function definition for ‘printCoefmat’
print.nlscal: no visible global function definition for ‘AIC’
print.nlscal: no visible global function definition for ‘printCoefmat’
residuals.cal: no visible global function definition for ‘residuals’
summary.lmcal : durbin: no visible global function definition for
‘model.frame’
summary.lmcal : durbin: no visible global function definition for
‘model.response’
summary.lmcal : durbin: no visible global function definition for
‘model.matrix’
summary.lmcal : durbin: no visible global function definition for
‘residuals’
summary.lmcal : durbin: no visible global function definition for
‘filter’
summary.lmcal : durbin: no visible global function definition for
‘pnorm’
summary.lmcal: no visible global function definition for ‘pnorm’
summary.lmcal: no visible global function definition for ‘shapiro.test’
summary.lmcal: no visible global function definition for ‘residuals’
summary.lmcal: no visible global function definition for ‘quantile’
summary.lmcal: no visible global function definition for ‘AIC’
summary.lmcal: no visible global function definition for
‘bartlett.test’
summary.lmcal: no visible binding for global variable ‘var’
summary.lmcal: no visible global function definition for ‘printCoefmat’
summary.nlscal : durbin: no visible global function definition for
‘residuals’
summary.nlscal: no visible global function definition for ‘AIC’
summary.nlscal: no visible global function definition for
‘shapiro.test’
summary.nlscal: no visible global function definition for ‘residuals’
summary.nlscal: no visible global function definition for ‘quantile’
summary.nlscal: no visible global function definition for
‘bartlett.test’
summary.nlscal: no visible binding for global variable ‘var’
summary.nlscal: no visible global function definition for
‘printCoefmat’
vstat: no visible global function definition for ‘anova’
vstat: no visible global function definition for ‘aov’
Undefined global functions or variables:
AIC IQR abline anova ansari.test aov bartlett.test coefficients
confint df.residual filter fitted fligner.test kruskal.test lm loess
mad median model.frame model.matrix model.response mtext nls plot
pnorm predict printCoefmat qchisq qnorm qqline qqnorm qt quantile
residuals sd shapiro.test t.test uniroot update var var.test
wilcox.test
Consider adding
importFrom("graphics", "abline", "mtext", "plot")
importFrom("stats", "AIC", "IQR", "anova", "ansari.test", "aov",
"bartlett.test", "coefficients", "confint", "df.residual",
"filter", "fitted", "fligner.test", "kruskal.test", "lm",
"loess", "mad", "median", "model.frame", "model.matrix",
"model.response", "nls", "pnorm", "predict", "printCoefmat",
"qchisq", "qnorm", "qqline", "qqnorm", "qt", "quantile",
"residuals", "sd", "shapiro.test", "t.test", "uniroot",
"update", "var", "var.test", "wilcox.test")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.13
Check: Rd line widths
Result: NOTE
Rd file 'dstat.Rd':
\usage lines wider than 90 characters:
na.rm = FALSE, conf.level = 0.95, alternative = c("two.sided", "less", "greater"), ansari = FALSE)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.13
Check: examples
Result: ERROR
Running examples in ‘quantchem-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AIC.cal
> ### Title: Akaike's An Information Criterion for calibration models
> ### Aliases: AIC.cal
> ### Keywords: models
>
> ### ** Examples
>
> data(ibuprofen)
> attach(ibuprofen)
> fit = lmcal(conc,area)
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
Assuming constant prediction variance even though model fit is weighted
> AIC(fit)
Error in UseMethod("logLik") :
no applicable method for 'logLik' applied to an object of class "c('lmcal', 'cal')"
Calls: AIC -> AIC.default -> ll
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64