Last updated on 2018-06-29 15:49:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.41 | 1.55 | 20.07 | 21.62 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.41 | 1.48 | 15.60 | 17.08 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.41 | 27.09 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.41 | 25.78 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.41 | 5.00 | 33.00 | 38.00 | OK | |
| r-patched-linux-x86_64 | 1.41 | ERROR | ||||
| r-patched-solaris-x86 | 1.41 | 35.30 | OK | |||
| r-release-linux-x86_64 | 1.41 | 1.94 | 18.52 | 20.46 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.41 | 7.00 | 49.00 | 56.00 | OK | |
| r-release-osx-x86_64 | 1.41 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.41 | 5.00 | 43.00 | 48.00 | OK | |
| r-oldrel-osx-x86_64 | 1.3 | OK |
Version: 1.41
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt","cohort3_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046, dir=tempdir())
Analysis started Fri Jun 29 05:53:05 2018
Reading /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MetaSubtract/extdata/meta_results.txt
Subtracting effects of /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt
- Number of genetic markers removed because of mismatch in alleles: 1 (0.12%)
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt.allele_mismatch.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.41
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt","cohort3_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046, dir=tempdir())
Analysis started Fri Jun 29 05:03:36 2018
Reading /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MetaSubtract/extdata/meta_results.txt
Subtracting effects of /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt
- Number of genetic markers removed because of mismatch in alleles: 1 (0.12%)
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt.allele_mismatch.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.41
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt","cohort3_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046, dir=tempdir())
Analysis started Thu Jun 28 05:50:05 2018
Reading /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MetaSubtract/extdata/meta_results.txt
Subtracting effects of /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt
- Number of genetic markers removed because of mismatch in alleles: 1 (0.12%)
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt.allele_mismatch.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.41
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt","cohort3_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046, dir=tempdir())
Analysis started Thu Jun 28 17:48:21 2018
Reading /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/MetaSubtract/extdata/meta_results.txt
Subtracting effects of /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt
- Number of genetic markers removed because of mismatch in alleles: 1 (0.12%)
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/MetaSubtract/extdata/cohort1_results.txt.allele_mismatch.txt': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-release-linux-x86_64