Last updated on 2018-06-30 20:50:19 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 11.75 | 183.59 | 195.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 12.22 | 142.29 | 154.51 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 244.29 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 230.57 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.2.0 | 26.00 | 270.00 | 296.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 11.47 | 158.49 | 169.96 | OK | |
| r-patched-solaris-x86 | 0.2.0 | 234.50 | ERROR | |||
| r-release-linux-x86_64 | 0.2.0 | 12.12 | 153.84 | 165.96 | OK | |
| r-release-windows-ix86+x86_64 | 0.2.0 | 20.00 | 183.00 | 203.00 | OK | |
| r-release-osx-x86_64 | 0.2.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.0 | 17.00 | 258.00 | 275.00 | OK | |
| r-oldrel-osx-x86_64 | 0.1.2 | ERROR |
Version: 0.2.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Seurat’
Flavor: r-patched-solaris-x86
Version: 0.2.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘Seurat’
Flavor: r-patched-solaris-x86
Version: 0.2.0
Check: for missing documentation entries
Result: ERROR
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘Seurat’
Error in .requirePackage(package) :
unable to find required package ‘Seurat’
Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.0
Check: data for non-ASCII characters
Result: NOTE
Error in .requirePackage(package) :
unable to find required package 'Seurat'
Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [23s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clustree)
Loading required package: ggraph
Loading required package: ggplot2
>
> test_check("clustree")
── 1. Error: seurat interface works (@test-clustree-overlay.R#25) ─────────────
unable to find required package 'Seurat'
1: expect_is(clustree_overlay(sim_seurat, x_value = "pca1", y_value = "pca2", red_dim = "pca"),
c("gg", "ggplot")) at testthat/test-clustree-overlay.R:25
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: clustree_overlay(sim_seurat, x_value = "pca1", y_value = "pca2", red_dim = "pca")
5: .extendsForS3(structure("seurat", package = "Seurat"))
6: extends(Class, maybe = FALSE)
7: getClassDef(class1)
8: .requirePackage(package)
9: stop(gettextf("unable to find required package %s", sQuote(package)), domain = NA)
── 2. Failure: red_dim check works (@test-clustree-overlay.R#53) ──────────────
`clustree_overlay(...)` threw an error with unexpected message.
Expected match: "red_dim must be the name of"
Actual message: "unable to find required package 'Seurat'"
── 3. Failure: x_value y_value check works (@test-clustree-overlay.R#65) ──────
`clustree_overlay(...)` threw an error with unexpected message.
Expected match: "No data identified for x_value or y_value"
Actual message: "unable to find required package 'Seurat'"
── 4. Failure: x_value y_value check works (@test-clustree-overlay.R#74) ──────
`clustree_overlay(...)` threw an error with unexpected message.
Expected match: "No data identified for x_value or y_value"
Actual message: "unable to find required package 'Seurat'"
── 5. Error: seurat interface works (@test-clustree.R#17) ─────────────────────
unable to find required package 'Seurat'
1: expect_is(clustree(sim_seurat), c("gg", "ggplot")) at testthat/test-clustree.R:17
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: clustree(sim_seurat)
5: .extendsForS3(structure("seurat", package = "Seurat"))
6: extends(Class, maybe = FALSE)
7: getClassDef(class1)
8: .requirePackage(package)
9: stop(gettextf("unable to find required package %s", sQuote(package)), domain = NA)
══ testthat results ═══════════════════════════════════════════════════════════
OK: 47 SKIPPED: 0 FAILED: 5
1. Error: seurat interface works (@test-clustree-overlay.R#25)
2. Failure: red_dim check works (@test-clustree-overlay.R#53)
3. Failure: x_value y_value check works (@test-clustree-overlay.R#65)
4. Failure: x_value y_value check works (@test-clustree-overlay.R#74)
5. Error: seurat interface works (@test-clustree.R#17)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 183-187 (clustree.Rmd)
Error: processing vignette 'clustree.Rmd' failed with diagnostics:
there is no package called 'Seurat'
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘SingleCellExperiment’
Flavor: r-release-osx-x86_64
Version: 0.2.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘SingleCellExperiment’
Flavor: r-release-osx-x86_64
Version: 0.2.0
Check: for missing documentation entries
Result: ERROR
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘SingleCellExperiment’
Error in .requirePackage(package) :
unable to find required package ‘SingleCellExperiment’
Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.2.0
Check: data for non-ASCII characters
Result: NOTE
Error in .requirePackage(package) :
unable to find required package 'SingleCellExperiment'
Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/17s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
6: extends(Class, maybe = FALSE)
7: getClassDef(class1)
8: .requirePackage(package)
9: stop(gettextf("unable to find required package %s", sQuote(package)), domain = NA)
══ testthat results ═══════════════════════════════════════════════════════════
OK: 47 SKIPPED: 0 FAILED: 5
1. Error: SingleCellExperiment interface works (@test-clustree-overlay.R#16)
2. Failure: red_dim check works (@test-clustree-overlay.R#48)
3. Failure: x_value y_value check works (@test-clustree-overlay.R#60)
4. Failure: x_value y_value check works (@test-clustree-overlay.R#69)
5. Error: SingleCellExperiment interface works (@test-clustree.R#12)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 154-158 (clustree.Rmd)
Error: processing vignette 'clustree.Rmd' failed with diagnostics:
there is no package called 'SingleCellExperiment'
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘SingleCellExperiment’
Flavor: r-oldrel-osx-x86_64
Version: 0.1.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘SingleCellExperiment’
Flavor: r-oldrel-osx-x86_64
Version: 0.1.2
Check: for missing documentation entries
Result: ERROR
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘SingleCellExperiment’
Error in .requirePackage(package) :
unable to find required package ‘SingleCellExperiment’
Calls: <Anonymous> ... withCallingHandlers -> is -> getClassDef -> .requirePackage
Execution halted
Flavor: r-oldrel-osx-x86_64
Version: 0.1.2
Check: data for non-ASCII characters
Result: NOTE
Error in .requirePackage(package) :
unable to find required package 'SingleCellExperiment'
Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage
Execution halted
Flavor: r-oldrel-osx-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: clustree(sim_sc3, prefix = "sc3_", suffix = "_clusters")
5: .extendsForS3(structure("SingleCellExperiment", package = "SingleCellExperiment"))
6: extends(Class, maybe = FALSE)
7: getClassDef(class1)
8: .requirePackage(package)
9: stop(gettextf("unable to find required package %s", sQuote(package)), domain = NA)
══ testthat results ═══════════════════════════════════════════════════════════
OK: 28 SKIPPED: 0 FAILED: 1
1. Error: SingleCellExperiment interface works (@test-clustree.R#12)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-osx-x86_64
Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 143-147 (clustree.Rmd)
Error: processing vignette 'clustree.Rmd' failed with diagnostics:
there is no package called 'SingleCellExperiment'
Execution halted
Flavor: r-oldrel-osx-x86_64