Last updated on 2018-09-26 06:47:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.1 | 2.07 | 47.44 | 49.51 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.2.1 | 1.59 | 32.87 | 34.46 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.2.1 | 59.06 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.1 | 61.79 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.2.1 | 11.00 | 118.00 | 129.00 | NOTE | |
| r-patched-linux-x86_64 | 1.2.1 | 1.67 | 39.24 | 40.91 | ERROR | |
| r-patched-solaris-x86 | 1.2.1 | 50.00 | ERROR | |||
| r-release-linux-x86_64 | 1.2.1 | 1.75 | 37.49 | 39.24 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.2.1 | 9.00 | 111.00 | 120.00 | NOTE | |
| r-release-osx-x86_64 | 1.2.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.1 | 8.00 | 131.00 | 139.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.2.1 | NOTE |
Version: 1.2.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
tm.c:184:9: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
tm.c:185:9: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64
Version: 1.2.1
Check: dependencies in R code
Result: NOTE
Package in Depends field not imported from: ‘methods’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.2.1
Check: compiled code
Result: NOTE
File ‘TimeMachine/libs/TimeMachine.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘TimeMachine-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: pophistory
> ### Title: History of Population Size
> ### Aliases: pophistory pophistory.tm
>
> ### ** Examples
>
> # Load example dataset
> data(pdm)
>
> transitions <- full.transitions(pdm$unitary.transitions, pdm$loci)
> pi <- stationary.dist(transitions)
> n <- 10
> mu <- 1
> samples <- 10
> est.res <- tm(transitions, pi, pdm$population, n, mu, samples)
>
> # Plot minimum, median and maximum SEN as a function of population size
> h <- pophistory(est.res, probs=c(0, 0.5, 1))
Error in UseMethod("pophistory") :
no applicable method for 'pophistory' applied to an object of class "tm"
Calls: pophistory -> pophistory
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.2.1
Check: examples
Result: ERROR
Running examples in ‘TimeMachine-Ex.R’ failed
The error most likely occurred in:
> ### Name: mu.mle
> ### Title: Maximum-Likelihood Estimation of the Mutation Rate
> ### Aliases: mu.mle
>
> ### ** Examples
>
> # Load example dataset
> data(pdm)
> transitions <- full.transitions(pdm$unitary.transitions, pdm$loci)
> pi <- stationary.dist(transitions)
>
> mu.int <- c(0.1, 10)
> samples <- 10
>
> # MLE of the mutation rate for a single target population size
> n <- 10
> mle.res <- mu.mle(transitions, pi, pdm$population, n, mu.int, samples)
Error: C stack usage 189040340 is too close to the limit
Execution halted
Flavor: r-patched-solaris-x86