Last updated on 2019-01-11 06:46:58 CET.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 1.0.4 | 2.96 | 34.05 | 37.01 | ERROR | |
r-devel-linux-x86_64-debian-gcc | 1.0.4 | 1.88 | 26.69 | 28.57 | ERROR | |
r-devel-linux-x86_64-fedora-clang | 1.0.4 | 43.42 | ERROR | |||
r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 39.95 | ERROR | |||
r-devel-windows-ix86+x86_64 | 1.0.4 | 4.00 | 49.00 | 53.00 | ERROR | |
r-patched-linux-x86_64 | 1.0.4 | 2.29 | 31.72 | 34.01 | ERROR | |
r-patched-solaris-x86 | 1.0.4 | 61.10 | ERROR | |||
r-release-linux-x86_64 | 1.0.4 | 2.82 | 31.77 | 34.59 | ERROR | |
r-release-windows-ix86+x86_64 | 1.0.4 | 6.00 | 46.00 | 52.00 | ERROR | |
r-release-osx-x86_64 | 1.0.4 | OK | ||||
r-oldrel-windows-ix86+x86_64 | 1.0.4 | 3.00 | 44.00 | 47.00 | ERROR | |
r-oldrel-osx-x86_64 | 1.0.4 | OK |
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘mlmm.gwas-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mlmm_allmodels
> ### Title: Multi-Locus Mixed-Model
> ### Aliases: mlmm_allmodels
>
> ### ** Examples
>
> ### Data for additive and additive+dominance models
>
> data("mlmm.gwas.AD")
>
> ### Additive model ###
>
> XX = list(Xa)
> KK = list(K.add)
>
> # GWAS
> res_mlmm <- mlmm_allmodels(floweringDateAD, XX, KK)
Error in sommer::mmer2(fixed, random, data = data, G = KK.proj, silent = TRUE) :
unused arguments (G = KK.proj, silent = TRUE)
Calls: mlmm_allmodels -> mixedModelWithSommer
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.4
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘gwas-manual.Rmd’ using rmarkdown
Quitting from lines 130-131 (gwas-manual.Rmd)
Error: processing vignette 'gwas-manual.Rmd' failed with diagnostics:
unused arguments (G = KK.proj, silent = TRUE)
--- failed re-building ‘gwas-manual.Rmd’
SUMMARY: processing the following file failed:
‘gwas-manual.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.4
Check: examples
Result: ERROR
Running examples in ‘mlmm.gwas-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlmm_allmodels
> ### Title: Multi-Locus Mixed-Model
> ### Aliases: mlmm_allmodels
>
> ### ** Examples
>
> ### Data for additive and additive+dominance models
>
> data("mlmm.gwas.AD")
>
> ### Additive model ###
>
> XX = list(Xa)
> KK = list(K.add)
>
> # GWAS
> res_mlmm <- mlmm_allmodels(floweringDateAD, XX, KK)
Error in sommer::mmer2(fixed, random, data = data, G = KK.proj, silent = TRUE) :
unused arguments (G = KK.proj, silent = TRUE)
Calls: mlmm_allmodels -> mixedModelWithSommer
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.4
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘gwas-manual.Rmd’ using rmarkdown
Quitting from lines 130-131 (gwas-manual.Rmd)
Error: processing vignette 'gwas-manual.Rmd' failed with diagnostics:
unused arguments (G = KK.proj, silent = TRUE)
--- failed re-building ‘gwas-manual.Rmd’
SUMMARY: processing the following file failed:
‘gwas-manual.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64
Version: 1.0.4
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Quitting from lines 130-131 (gwas-manual.Rmd)
Error: processing vignette ‘gwas-manual.Rmd’ failed with diagnostics:
unused arguments (G = KK.proj, silent = TRUE)
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0.4
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 130-131 (gwas-manual.Rmd)
Error: processing vignette 'gwas-manual.Rmd' failed with diagnostics:
unused arguments (G = KK.proj, silent = TRUE)
Execution halted
Flavor: r-patched-solaris-x86