CRAN Package Check Results for Package EpiBayes

Last updated on 2019-01-23 12:47:57 CET.

Check Details

Version: 0.1.2
Check: R code for possible problems
Result: NOTE
    plot.eb: no visible global function definition for ‘plot’
    plot.eb : <anonymous>: no visible global function definition for
     ‘lines’
    plot.ebhistorical: no visible global function definition for ‘palette’
    plot.ebhistorical: no visible global function definition for ‘dev.new’
    plot.ebhistorical: no visible global function definition for ‘par’
    plot.ebhistorical: no visible global function definition for
     ‘topo.colors’
    plot.ebhistorical: no visible global function definition for ‘plot’
    plot.ebhistorical: no visible global function definition for ‘curve’
    plot.ebhistorical: no visible global function definition for ‘lines’
    plot.ebhistoricalsummary: no visible global function definition for
     ‘topo.colors’
    plot.ebhistoricalsummary: no visible global function definition for
     ‘dev.new’
    plot.ebhistoricalsummary: no visible global function definition for
     ‘plot’
    plot.ebhistoricalsummary: no visible global function definition for
     ‘axis’
    plot.ebhistoricalsummary: no visible global function definition for
     ‘lines’
    plot.ebhistoricalsummary: no visible global function definition for
     ‘legend’
    Undefined global functions or variables:
     axis curve dev.new legend lines palette par plot topo.colors
    Consider adding
     importFrom("grDevices", "dev.new", "palette", "topo.colors")
     importFrom("graphics", "axis", "curve", "legend", "lines", "par",
     "plot")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    duplicated vignette title:
     ‘Disease Freedom with EpiBayes’
    
    --- re-building ‘EpiBayes2Level.Rnw’ using knitr
    Loading required package: survival
    Package epiR 0.9-99 is loaded
    Type help(epi.about) for summary information
    
    
    --- finished re-building ‘EpiBayes2Level.Rnw’
    
    --- re-building ‘EpiBayes3Level.Rnw’ using knitr
    --- finished re-building ‘EpiBayes3Level.Rnw’
    
    --- re-building ‘EpiBayesIntroduction.Rnw’ using knitr
    Loading required package: survival
    Package epiR 0.9-99 is loaded
    Type help(epi.about) for summary information
    
    
    Error in parse(text = code, keep.source = FALSE) :
     <text>:2:17: unexpected symbol
    1: install.packages("EpiBayes_0.0.1", type = "source", repos = NULL) # Make sure the
    2: version is
     ^
    Warning in highr::hilight(x, format, prompt = options$prompt, markup = opts$markup) :
     the syntax of the source code is invalid; the fallback mode is used
    --- finished re-building ‘EpiBayesIntroduction.Rnw’
    
    Error: Duplicate vignette titles.
     Ensure that the %\VignetteIndexEntry lines in the vignette sources
     correspond to the vignette titles.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    duplicated vignette title:
     ‘Disease Freedom with EpiBayes’
    
    --- re-building ‘EpiBayes2Level.Rnw’ using knitr
    Loading required package: survival
    Package epiR 0.9-99 is loaded
    Type help(epi.about) for summary information
    
    
    --- finished re-building ‘EpiBayes2Level.Rnw’
    
    --- re-building ‘EpiBayes3Level.Rnw’ using knitr
    --- finished re-building ‘EpiBayes3Level.Rnw’
    
    --- re-building ‘EpiBayesIntroduction.Rnw’ using knitr
    Loading required package: survival
    Package epiR 0.9-99 is loaded
    Type help(epi.about) for summary information
    
    
    Error in parse(text = code, keep.source = FALSE) :
     <text>:2:17: unexpected symbol
    1: install.packages("EpiBayes_0.0.1", type = "source", repos = NULL) # Make sure the
    2: version is
     ^
    Warning in highr::hilight(x, format, prompt = options$prompt, markup = opts$markup) :
     the syntax of the source code is invalid; the fallback mode is used
    --- finished re-building ‘EpiBayesIntroduction.Rnw’
    
    Error: Duplicate vignette titles.
     Ensure that the %\VignetteIndexEntry lines in the vignette sources
     correspond to the vignette titles.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning: running command 'kpsewhich framed.sty' had status 1
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Loading required package: survival
    Package epiR 0.9-79 is loaded
    Type help(epi.about) for summary information
    
    
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'EpiBayes2Level.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `titling.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.63 \usepackage
     {datetime}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64