CRAN Package Check Results for Package MethComp

Last updated on 2019-01-26 15:47:38 CET.

Check Details

Version: 1.22.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘nlme’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘BRugs’ ‘R2WinBUGS’ ‘coda’ ‘rjags’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘nlme’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    ':::' call which should be '::': ‘nlme:::VarCorr’
     See the note in ?`:::` about the use of this operator.
    There are ::: calls to the package's namespace in its code. A package
     almost never needs to use ::: for its own objects:
     ‘VC.est.fixed’ ‘VC.est.random’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.22.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.VarComp
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.22.2
Check: R code for possible problems
Result: NOTE
    AB.plot: no visible global function definition for ‘complete.cases’
    AB.plot: no visible global function definition for ‘ave’
    AB.plot: no visible global function definition for ‘segments’
    AltReg: no visible global function definition for ‘complete.cases’
    AltReg: no visible global function definition for ‘fitted’
    AltReg: no visible global function definition for ‘lm’
    AltReg: no visible global function definition for ‘lme’
    AltReg: no visible global function definition for ‘flush.console’
    BA.est: no visible global function definition for ‘lmeControl’
    BA.est: no visible global function definition for ‘qt’
    BA.plot: no visible global function definition for ‘grey’
    BA.plot: no visible global function definition for ‘str’
    BlandAltman: no visible global function definition for ‘qt’
    BlandAltman: no visible global function definition for ‘sd’
    BlandAltman: no visible global function definition for ‘pt’
    BlandAltman : cnr: no visible global function definition for ‘par’
    BlandAltman: no visible global function definition for ‘lm’
    BlandAltman: no visible global function definition for ‘coef’
    BlandAltman: no visible global function definition for ‘plot.default’
    BlandAltman: no visible global function definition for ‘abline’
    BlandAltman: no visible global function definition for ‘text’
    BlandAltman: no visible global function definition for ‘points’
    BlandAltman: no visible global function definition for ‘axis’
    BlandAltman: no visible global function definition for ‘box’
    BlandAltman: no visible global function definition for ‘par’
    Deming: no visible global function definition for ‘complete.cases’
    Deming: no visible global function definition for ‘var’
    Deming: no visible global function definition for ‘cov’
    Deming: no visible binding for global variable ‘quantile’
    MCmcmc: no visible global function definition for ‘flush.console’
    MCmcmc: no visible global function definition for ‘jags.model’
    MCmcmc: no visible global function definition for ‘bugs’
    MCmcmc: no visible global function definition for ‘read.bugs’
    Meth.sim: no visible global function definition for ‘runif’
    Meth.sim: no visible global function definition for ‘rnorm’
    Meth.sim: no visible global function definition for ‘rbinom’
    PBreg: no visible global function definition for ‘complete.cases’
    PBreg: no visible global function definition for ‘combn’
    PBreg: no visible global function definition for ‘qnorm’
    PBreg: no visible global function definition for ‘median’
    TDI: no visible global function definition for ‘sd’
    TDI: no visible global function definition for ‘qnorm’
    TDI : FF: no visible global function definition for ‘pnorm’
    TDI: no visible global function definition for ‘uniroot’
    TDI: no visible global function definition for ‘quantile’
    VC.est: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lmeControl’
    VC.est.fixed: no visible global function definition for ‘lme’
    VC.est.fixed: no visible global function definition for ‘pdIdent’
    VC.est.fixed: no visible global function definition for ‘varIdent’
    VC.est.fixed: no visible global function definition for ‘pdDiag’
    VC.est.fixed: no visible global function definition for ‘pdSymm’
    VC.est.fixed: no visible global function definition for ‘residuals’
    VC.est.random: no visible global function definition for ‘lmeControl’
    VC.est.random: no visible global function definition for ‘lme’
    VC.est.random: no visible global function definition for ‘pdBlocked’
    VC.est.random: no visible global function definition for ‘pdIdent’
    VC.est.random: no visible global function definition for ‘varIdent’
    VC.est.random: no visible global function definition for ‘ranef’
    VC.est.random: no visible global function definition for ‘pdDiag’
    VC.est.random: no visible global function definition for ‘tail’
    VC.est.random: no visible global function definition for ‘residuals’
    bothlines: no visible global function definition for ‘abline’
    bothlines: no visible global function definition for ‘lm’
    bothlines: no visible global function definition for ‘coef’
    connect2mean: no visible global function definition for ‘ave’
    connect2mean: no visible global function definition for ‘segments’
    corr.measures: no visible global function definition for
     ‘complete.cases’
    corr.measures: no visible global function definition for ‘var’
    corr.measures: no visible global function definition for ‘cov’
    corr.measures: no visible global function definition for ‘cor’
    do.DA.reg: no visible global function definition for ‘complete.cases’
    do.DA.reg: no visible global function definition for ‘lm’
    find.mean: no visible global function definition for ‘varnames’
    find.vars: no visible global function definition for ‘varnames’
    lines.MethComp: no visible global function definition for ‘par’
    lines.MethComp: no visible global function definition for ‘qt’
    lines.MethComp: no visible global function definition for ‘matlines’
    lines.MethComp: no visible global function definition for ‘axis’
    lines.MethComp: no visible global function definition for ‘box’
    mean.Meth: no visible global function definition for ‘aggregate’
    middle: no visible global function definition for ‘quantile’
    pairs.MCmcmc: no visible global function definition for ‘rainbow’
    pairs.MCmcmc: no visible global function definition for ‘pairs’
    pairs.MCmcmc: no visible global function definition for ‘varnames’
    perm.repl: no visible global function definition for ‘runif’
    plot.MCmcmc: no visible global function definition for ‘gray’
    plot.MCmcmc : conv.pair: no visible global function definition for
     ‘abline’
    plot.MCmcmc : conv.pair: no visible global function definition for
     ‘strwidth’
    plot.MCmcmc : conv.pair: no visible global function definition for
     ‘strheight’
    plot.MCmcmc : conv.pair: no visible global function definition for
     ‘rect’
    plot.MCmcmc : conv.pair: no visible global function definition for
     ‘par’
    plot.MCmcmc : conv.pair: no visible global function definition for
     ‘text’
    plot.MCmcmc : conv.pair: no visible global function definition for
     ‘box’
    plot.MCmcmc: no visible global function definition for ‘par’
    plot.MCmcmc: no visible global function definition for ‘plot’
    plot.MCmcmc: no visible global function definition for ‘axis’
    plot.MCmcmc: no visible global function definition for ‘mtext’
    plot.Meth : pnl: no visible global function definition for ‘abline’
    plot.Meth : pnl: no visible global function definition for ‘points’
    plot.Meth : pnu: no visible global function definition for ‘sd’
    plot.Meth : pnu: no visible global function definition for ‘abline’
    plot.Meth : pnu: no visible global function definition for ‘points’
    plot.Meth: no visible global function definition for ‘par’
    plot.Meth: no visible global function definition for ‘plot’
    plot.Meth: no visible global function definition for ‘text’
    plot.Meth: no visible global function definition for ‘box’
    plot.Meth: no visible global function definition for ‘axis’
    plot.MethComp: no visible global function definition for ‘grey’
    plot.MethComp: no visible global function definition for ‘plot’
    plot.MethComp: no visible global function definition for ‘abline’
    plot.MethComp: no visible global function definition for ‘box’
    plot.MethComp: no visible global function definition for ‘strwidth’
    plot.MethComp: no visible global function definition for ‘strheight’
    plot.MethComp: no visible global function definition for ‘par’
    plot.MethComp: no visible global function definition for ‘rect’
    plot.MethComp: no visible global function definition for ‘text’
    plot.PBreg: no visible global function definition for ‘predict’
    plot.PBreg: no visible global function definition for ‘plot’
    plot.PBreg: no visible global function definition for ‘polygon’
    plot.PBreg: no visible global function definition for ‘abline’
    plot.PBreg: no visible global function definition for ‘points’
    plot.PBreg: no visible global function definition for ‘text’
    plot.PBreg: no visible global function definition for ‘IQR’
    plot.PBreg: no visible global function definition for ‘hist’
    plot.PBreg: no visible global function definition for ‘density’
    plot.PBreg: no visible global function definition for ‘lines’
    plot.VarComp: no visible global function definition for ‘gray’
    plot.VarComp: no visible global function definition for ‘density’
    plot.VarComp: no visible global function definition for ‘quantile’
    plot.VarComp: no visible global function definition for ‘plot’
    plot.VarComp: no visible global function definition for ‘abline’
    plot.VarComp: no visible global function definition for ‘lines’
    plot.VarComp: no visible global function definition for ‘axis’
    plot.VarComp: no visible global function definition for ‘par’
    plot.VarComp: no visible global function definition for ‘text’
    plot.VarComp: no visible global function definition for ‘mtext’
    points.MethComp: no visible global function definition for ‘points’
    post.MCmcmc: no visible global function definition for ‘rainbow’
    post.mean: no visible global function definition for ‘gray’
    post.sd: no visible global function definition for ‘gray’
    predict.PBreg: no visible global function definition for ‘qnorm’
    predict.PBreg: no visible global function definition for ‘median’
    predict.PBreg: no visible global function definition for ‘quantile’
    print.MCmcmc: no visible global function definition for ‘ftable’
    print.MethComp: no visible global function definition for ‘ftable’
    sort.Meth: no visible global function definition for ‘ave’
    subset.MCmcmc : char.2.num: no visible global function definition for
     ‘varnames’
    summary.MCmcmc: no visible binding for global variable ‘quantile’
    summary.Meth: no visible global function definition for ‘addmargins’
    to.long: no visible global function definition for ‘reshape’
    to.wide: no visible global function definition for ‘reshape’
    trace.mean: no visible global function definition for ‘gray’
    trace.sd: no visible global function definition for ‘gray’
    Undefined global functions or variables:
     IQR abline addmargins aggregate ave axis box bugs coef combn
     complete.cases cor cov density fitted flush.console ftable gray grey
     hist jags.model lines lm lme lmeControl matlines median mtext pairs
     par pdBlocked pdDiag pdIdent pdSymm plot plot.default pnorm points
     polygon predict pt qnorm qt quantile rainbow ranef rbinom read.bugs
     rect reshape residuals rnorm runif sd segments str strheight strwidth
     tail text uniroot var varIdent varnames
    Consider adding
     importFrom("grDevices", "gray", "grey", "rainbow")
     importFrom("graphics", "abline", "axis", "box", "hist", "lines",
     "matlines", "mtext", "pairs", "par", "plot", "plot.default",
     "points", "polygon", "rect", "segments", "strheight",
     "strwidth", "text")
     importFrom("stats", "IQR", "addmargins", "aggregate", "ave", "coef",
     "complete.cases", "cor", "cov", "density", "fitted",
     "ftable", "lm", "median", "pnorm", "predict", "pt", "qnorm",
     "qt", "quantile", "rbinom", "reshape", "residuals", "rnorm",
     "runif", "sd", "uniroot", "var")
     importFrom("utils", "combn", "flush.console", "str", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.22.2
Check: files in ‘vignettes’
Result: NOTE
    Package has no Sweave vignette sources and no VignetteBuilder field.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.22.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘BRugs’
Flavors: r-patched-solaris-x86, r-release-osx-x86_64

Version: 1.22.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘BRugs’ ‘rjags’
Flavor: r-oldrel-osx-x86_64