CRAN Package Check Results for Package heemod

Last updated on 2019-02-09 16:46:32 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.9.3	9.89	335.00	344.89	ERROR
r-devel-linux-x86_64-debian-gcc	0.9.3	8.03	245.95	253.98	ERROR
r-devel-linux-x86_64-fedora-clang	0.9.3			235.87	OK
r-devel-linux-x86_64-fedora-gcc	0.9.3			206.68	OK
r-devel-windows-ix86+x86_64	0.9.3	21.00	349.00	370.00	OK
r-patched-linux-x86_64	0.9.3	8.86	296.66	305.52	ERROR
r-patched-solaris-x86	0.9.3			429.90	OK
r-release-linux-x86_64	0.9.3	6.84	300.47	307.31	ERROR
r-release-windows-ix86+x86_64	0.9.3	21.00	332.00	353.00	OK
r-release-osx-x86_64	0.9.3				OK
r-oldrel-windows-ix86+x86_64	0.9.3	26.00	486.00	512.00	OK
r-oldrel-osx-x86_64	0.9.3				OK

Check Details

Version: 0.9.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [72s/83s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(heemod)
     >
     > ## the Sys.setenv fixes a problem running tests
     > ## with parallel processing; related to
     > ## https://github.com/hadley/testthat/issues/86 and
     > ## https://github.com/hadley/testthat/issues/144
     >
     > Sys.setenv("R_TESTS" = "")
     >
     > test_check("heemod")
     ── 1. Error: absolute path works (@test_tabular_input.R#501) ──────────────────
     cannot open the connection
     1: write.csv(ref_edit, file.path(system.file("tabular/test", package = "heemod"), "edited_ref.csv"),
     row.names = FALSE) at testthat/test_tabular_input.R:501
     2: eval.parent(Call)
     3: eval(expr, p)
     4: eval(expr, p)
     5: write.table(ref_edit, file.path(system.file("tabular/test", package = "heemod"),
     "edited_ref.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     6: file(file, ifelse(append, "a", "w"))

     ── 2. Error: Running model from files works. (@test_tabular_input.R#775) ──────
     cannot open the connection
     1: run_model_tabular(location = system.file("tabular/thr", package = "heemod"), run_psa = TRUE,
     run_demo = TRUE, save = TRUE, overwrite = TRUE) at testthat/test_tabular_input.R:775
     2: save_outputs(outputs, output_dir, overwrite)
     3: utils::write.csv(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE)
     4: eval.parent(Call)
     5: eval(expr, p)
     6: eval(expr, p)
     7: write.table(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     8: file(file, ifelse(append, "a", "w"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 473 SKIPPED: 0 FAILED: 2
     1. Error: absolute path works (@test_tabular_input.R#501)
     2. Error: Running model from files works. (@test_tabular_input.R#775)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.9.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [53s/78s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(heemod)
     >
     > ## the Sys.setenv fixes a problem running tests
     > ## with parallel processing; related to
     > ## https://github.com/hadley/testthat/issues/86 and
     > ## https://github.com/hadley/testthat/issues/144
     >
     > Sys.setenv("R_TESTS" = "")
     >
     > test_check("heemod")
     ── 1. Error: absolute path works (@test_tabular_input.R#501) ──────────────────
     cannot open the connection
     1: write.csv(ref_edit, file.path(system.file("tabular/test", package = "heemod"), "edited_ref.csv"),
     row.names = FALSE) at testthat/test_tabular_input.R:501
     2: eval.parent(Call)
     3: eval(expr, p)
     4: eval(expr, p)
     5: write.table(ref_edit, file.path(system.file("tabular/test", package = "heemod"),
     "edited_ref.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     6: file(file, ifelse(append, "a", "w"))

     ── 2. Error: Running model from files works. (@test_tabular_input.R#775) ──────
     cannot open the connection
     1: run_model_tabular(location = system.file("tabular/thr", package = "heemod"), run_psa = TRUE,
     run_demo = TRUE, save = TRUE, overwrite = TRUE) at testthat/test_tabular_input.R:775
     2: save_outputs(outputs, output_dir, overwrite)
     3: utils::write.csv(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE)
     4: eval.parent(Call)
     5: eval(expr, p)
     6: eval(expr, p)
     7: write.table(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     8: file(file, ifelse(append, "a", "w"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 473 SKIPPED: 0 FAILED: 2
     1. Error: absolute path works (@test_tabular_input.R#501)
     2. Error: Running model from files works. (@test_tabular_input.R#775)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.9.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [69s/78s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(heemod)
     >
     > ## the Sys.setenv fixes a problem running tests
     > ## with parallel processing; related to
     > ## https://github.com/hadley/testthat/issues/86 and
     > ## https://github.com/hadley/testthat/issues/144
     >
     > Sys.setenv("R_TESTS" = "")
     >
     > test_check("heemod")
     ── 1. Error: absolute path works (@test_tabular_input.R#501) ──────────────────
     cannot open the connection
     1: write.csv(ref_edit, file.path(system.file("tabular/test", package = "heemod"), "edited_ref.csv"),
     row.names = FALSE) at testthat/test_tabular_input.R:501
     2: eval.parent(Call)
     3: eval(expr, p)
     4: eval(expr, p)
     5: write.table(ref_edit, file.path(system.file("tabular/test", package = "heemod"),
     "edited_ref.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     6: file(file, ifelse(append, "a", "w"))

     ── 2. Error: Running model from files works. (@test_tabular_input.R#775) ──────
     cannot open the connection
     1: run_model_tabular(location = system.file("tabular/thr", package = "heemod"), run_psa = TRUE,
     run_demo = TRUE, save = TRUE, overwrite = TRUE) at testthat/test_tabular_input.R:775
     2: save_outputs(outputs, output_dir, overwrite)
     3: utils::write.csv(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE)
     4: eval.parent(Call)
     5: eval(expr, p)
     6: eval(expr, p)
     7: write.table(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     8: file(file, ifelse(append, "a", "w"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 473 SKIPPED: 0 FAILED: 2
     1. Error: absolute path works (@test_tabular_input.R#501)
     2. Error: Running model from files works. (@test_tabular_input.R#775)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.9.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [70s/77s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(heemod)
     >
     > ## the Sys.setenv fixes a problem running tests
     > ## with parallel processing; related to
     > ## https://github.com/hadley/testthat/issues/86 and
     > ## https://github.com/hadley/testthat/issues/144
     >
     > Sys.setenv("R_TESTS" = "")
     >
     > test_check("heemod")
     ── 1. Error: absolute path works (@test_tabular_input.R#501) ──────────────────
     cannot open the connection
     1: write.csv(ref_edit, file.path(system.file("tabular/test", package = "heemod"), "edited_ref.csv"),
     row.names = FALSE) at testthat/test_tabular_input.R:501
     2: eval.parent(Call)
     3: eval(expr, p)
     4: eval(expr, p)
     5: write.table(ref_edit, file.path(system.file("tabular/test", package = "heemod"),
     "edited_ref.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     6: file(file, ifelse(append, "a", "w"))

     ── 2. Error: Running model from files works. (@test_tabular_input.R#775) ──────
     cannot open the connection
     1: run_model_tabular(location = system.file("tabular/thr", package = "heemod"), run_psa = TRUE,
     run_demo = TRUE, save = TRUE, overwrite = TRUE) at testthat/test_tabular_input.R:775
     2: save_outputs(outputs, output_dir, overwrite)
     3: utils::write.csv(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE)
     4: eval.parent(Call)
     5: eval(expr, p)
     6: eval(expr, p)
     7: write.table(summary(outputs$demographics)$scaled_results, file = file.path(output_dir,
     "icer_by_group.csv"), row.names = FALSE, col.names = TRUE, sep = ",", dec = ".",
     qmethod = "double")
     8: file(file, ifelse(append, "a", "w"))

     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 473 SKIPPED: 0 FAILED: 2
     1. Error: absolute path works (@test_tabular_input.R#501)
     2. Error: Running model from files works. (@test_tabular_input.R#775)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64