CRAN Package Check Results for Package metabolomics

Last updated on 2019-02-28 14:48:36 CET.

Check Details

Version: 0.1.4
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1.4
Check: R code for possible problems
Result: NOTE
    Dendrogram: no visible global function definition for ‘dist’
    Dendrogram: no visible global function definition for ‘hclust’
    Dendrogram: no visible global function definition for ‘par’
    Dendrogram: no visible global function definition for ‘layout’
    Dendrogram: no visible global function definition for ‘plot’
    Dendrogram: no visible global function definition for ‘rect’
    Dendrogram: no visible global function definition for ‘axis’
    FoldChange: no visible global function definition for ‘hist’
    FoldChange: no visible global function definition for ‘write.csv’
    GroupSummary: no visible binding for global variable ‘sd’
    HeatMap : <anonymous>: no visible global function definition for ‘dist’
    HeatMap : <anonymous>: no visible global function definition for
     ‘hclust’
    LinearModelFit: no visible global function definition for ‘pt’
    LinearModelFit: no visible global function definition for ‘pchisq’
    LinearModelFit: no visible global function definition for ‘pf’
    LinearModelFit: no visible global function definition for ‘p.adjust’
    LinearModelFit: no visible global function definition for ‘na.omit’
    LinearModelFit: no visible global function definition for ‘write.csv’
    LogTransform: no visible global function definition for ‘write.csv’
    MetBoxPlots: no visible global function definition for ‘plot’
    MissingValues: no visible global function definition for ‘runif’
    MissingValues: no visible global function definition for ‘write.csv’
    MmsPlot: no visible binding for global variable ‘median’
    MmsPlot: no visible binding for global variable ‘sd’
    MmsPlot: no visible global function definition for ‘par’
    MmsPlot: no visible global function definition for ‘plot’
    MmsPlot: no visible global function definition for ‘axis’
    MmsPlot: no visible global function definition for ‘lines’
    MmsPlot: no visible global function definition for ‘legend’
    Normalise: no visible binding for global variable ‘median’
    Normalise: no visible global function definition for ‘model.matrix’
    Normalise: no visible global function definition for ‘write.csv’
    PcaPlots: no visible binding for global variable ‘var’
    PcaPlots: no visible global function definition for ‘prcomp’
    PcaPlots: no visible global function definition for ‘barplot’
    PcaPlots: no visible global function definition for ‘pairs’
    RlaPlots: no visible binding for global variable ‘median’
    RlaPlots: no visible global function definition for ‘boxplot’
    RlaPlots: no visible global function definition for ‘abline’
    ScatterPlot: no visible global function definition for ‘par’
    ScatterPlot: no visible global function definition for ‘strwidth’
    ScatterPlot: no visible global function definition for ‘plot’
    ScatterPlot: no visible global function definition for ‘points’
    ScatterPlot: no visible global function definition for ‘legend’
    TTests: no visible global function definition for ‘na.omit’
    TTests: no visible global function definition for ‘var’
    TTests: no visible global function definition for ‘t.test’
    TTests: no visible global function definition for ‘p.adjust’
    TTests: no visible global function definition for ‘write.csv’
    TwoGroup: no visible global function definition for ‘write.csv’
    TwoGroupPlots: no visible global function definition for ‘p.adjust’
    TwoGroupPlots: no visible global function definition for ‘par’
    TwoGroupPlots: no visible global function definition for ‘plot’
    TwoGroupPlots: no visible global function definition for ‘points’
    TwoGroupPlots: no visible global function definition for ‘abline’
    TwoGroupPlots: no visible global function definition for ‘text’
    VolcanoPlot: no visible global function definition for ‘plot’
    VolcanoPlot: no visible global function definition for ‘abline’
    VolcanoPlot: no visible global function definition for ‘mtext’
    VolcanoPlot: no visible global function definition for ‘points’
    VolcanoPlot: no visible global function definition for ‘text’
    heatmap_fn: no visible binding for global variable ‘dist’
    heatmap_fn: no visible binding for global variable ‘hclust’
    heatmap_fn: no visible global function definition for ‘par’
    heatmap_fn: no visible global function definition for ‘median’
    heatmap_fn: no visible global function definition for
     ‘order.dendrogram’
    heatmap_fn: no visible global function definition for ‘as.dendrogram’
    heatmap_fn: no visible global function definition for ‘reorder’
    heatmap_fn: no visible binding for global variable ‘sd’
    heatmap_fn: no visible global function definition for ‘layout’
    heatmap_fn: no visible global function definition for ‘image’
    heatmap_fn: no visible global function definition for ‘axis’
    heatmap_fn: no visible global function definition for ‘mtext’
    heatmap_fn: no visible global function definition for ‘rect’
    heatmap_fn: no visible global function definition for ‘abline’
    heatmap_fn: no visible global function definition for ‘lines’
    heatmap_fn: no visible global function definition for ‘text’
    heatmap_fn: no visible global function definition for ‘plot’
    heatmap_fn: no visible global function definition for ‘plot.new’
    heatmap_fn: no visible global function definition for ‘title’
    heatmap_fn: no visible global function definition for ‘density’
    heatmap_fn: no visible global function definition for ‘hist’
    pic_gen: no visible global function definition for ‘dev.new’
    pic_gen: no visible global function definition for ‘png’
    pic_gen: no visible global function definition for ‘jpeg’
    pic_gen: no visible global function definition for ‘tiff’
    pic_gen: no visible global function definition for ‘par’
    pic_gen: no visible global function definition for ‘plot’
    pic_gen: no visible global function definition for ‘abline’
    pic_gen: no visible global function definition for ‘text’
    pic_gen: no visible global function definition for ‘dev.off’
    print.metabdata: no visible global function definition for ‘head’
    print.results: no visible global function definition for ‘head’
    Undefined global functions or variables:
     abline as.dendrogram axis barplot boxplot density dev.new dev.off
     dist hclust head hist image jpeg layout legend lines median
     model.matrix mtext na.omit order.dendrogram p.adjust pairs par pchisq
     pf plot plot.new png points prcomp pt rect reorder runif sd strwidth
     t.test text tiff title var write.csv
    Consider adding
     importFrom("grDevices", "dev.new", "dev.off", "jpeg", "png", "tiff")
     importFrom("graphics", "abline", "axis", "barplot", "boxplot", "hist",
     "image", "layout", "legend", "lines", "mtext", "pairs",
     "par", "plot", "plot.new", "points", "rect", "strwidth",
     "text", "title")
     importFrom("stats", "as.dendrogram", "density", "dist", "hclust",
     "median", "model.matrix", "na.omit", "order.dendrogram",
     "p.adjust", "pchisq", "pf", "prcomp", "pt", "reorder",
     "runif", "sd", "t.test", "var")
     importFrom("utils", "head", "write.csv")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1.4
Check: contents of ‘data’ directory
Result: WARN
    Object named ‘.Random.seed’ found in dataset: ‘treated’
    Please remove it.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64