Last updated on 2019-03-01 08:49:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 3.69 | 36.27 | 39.96 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 2.49 | 28.27 | 30.76 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 48.87 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 43.70 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.2.1 | 6.00 | 51.00 | 57.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.1 | ERROR | ||||
| r-patched-solaris-x86 | 0.2.1 | 72.80 | ERROR | |||
| r-release-linux-x86_64 | 0.2.1 | 2.97 | 32.48 | 35.45 | ERROR | |
| r-release-windows-ix86+x86_64 | 0.2.1 | 6.00 | 66.00 | 72.00 | ERROR | |
| r-release-osx-x86_64 | 0.2.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.1 | 8.00 | 49.00 | 57.00 | ERROR | |
| r-oldrel-osx-x86_64 | 0.2.1 | OK |
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in ‘ezsummary-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ezmarkup
> ### Title: Easy way to "markup" a table before it is sent to be displayed
> ### Aliases: ezmarkup
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> dt <- mtcars %>% group_by(cyl) %>% select(gear, carb) %>% ezsummary_categorical(n=TRUE)
Adding missing grouping variables: `cyl`
>
> ezmarkup(dt, "...[.(.)]")
Error in ezmarkup(dt, "...[.(.)]") :
The number of dots(.) you entered does not match up with the number of columns in the table. Please review your pattern expression.
Note: If you do want to Add an actual dot, please use `.` to denote that specific dot
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("ezsummary")
>
> test_check("ezsummary")
── 1. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2))[2] not equivalent to c("variable").
1/1 mismatches
x[1]: "count"
y[1]: "variable"
── 2. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2, n = T))[2:3] not equivalent to c("variable", "n").
2/2 mismatches
x[1]: "n"
y[1]: "variable"
x[2]: "count"
y[2]: "n"
── 3. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2)[2, 2]) not equivalent to c("gear_4").
1/1 mismatches
x[1]: "13"
y[1]: "gear_4"
── 4. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2, n = T)[2, 2:3]) not equivalent to c("gear_4", "19").
2/2 mismatches
x[1]: "32"
y[1]: "gear_4"
x[2]: "13"
y[2]: "19"
── 5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1
Duplicate identifiers for rows (1, 2), (3, 4), (5, 6)
1: expect_equal(names(ezsummary_quantitative(df2)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:19
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df2)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 6. Error: ezsummary_quantitative can work with 2 variables with grouping info
Duplicate identifiers for rows (5, 6), (3, 4), (9, 10), (7, 8), (1, 2)
1: expect_equal(names(ezsummary_quantitative(df4)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:33
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df4)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 7. Error: ezsummary_quantitative can handle NAs when running with quantile=TR
Can't find columns `mean`, `sd`, `q0`, `q25`, `q50`, … (and 2 more) in `.data`.
1: expect_equivalent(df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0,
q25, q50, q75, q100), expected = structure(list(q0 = -2, q25 = -1, q50 = 0, q75 = 1,
q100 = 2), class = c("tbl_df", "tbl", "data.frame"), row.names = as.integer(1))) at testthat/test-ezsummary_quantitative.R:40
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0, q25, q50, q75,
q100)
5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
6: eval(quote(`_fseq`(`_lhs`)), env, env)
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: `_fseq`(`_lhs`)
9: freduce(value, `_function_list`)
10: function_list[[i]](value)
11: ezsummary(., quantile = TRUE)
12: do.call("ezsummary_q", append(list(tbl = tbl_q), ez_options_q))
13: ezsummary_q(tbl = structure(list(x = c(-2, 2, 0, NA), y = c(1, 1, 1, 1)), class = c("grouped_df",
"tbl_df", "tbl", "data.frame"), row.names = c(NA, 4L), groups = structure(list(y = 1,
.rows = list(1:4)), row.names = c(NA, -1L), class = c("tbl_df", "tbl", "data.frame"
), .drop = TRUE), var_types = c(x = "q", y = "q")), quantile = TRUE)
14: tbl_summary[c(if (flavor == "long" & n_group != 0) group_name else NULL, "variable",
tasks_names)]
15: `[.tbl_df`(tbl_summary, c(if (flavor == "long" & n_group != 0) group_name else NULL,
"variable", tasks_names))
16: check_names_df(i, x)
17: check_names_before_after_character(j, names(unclass(x)))
18: abort(error_unknown_names(unknown_names))
══ testthat results ═══════════════════════════════════════════════════════════
OK: 20 SKIPPED: 0 FAILED: 7
1. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#29)
2. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#31)
3. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#33)
4. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#35)
5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1 variable (@test-ezsummary_quantitative.R#19)
6. Error: ezsummary_quantitative can work with 2 variables with grouping info (@test-ezsummary_quantitative.R#33)
7. Error: ezsummary_quantitative can handle NAs when running with quantile=TRUE (@test-ezsummary_quantitative.R#40)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘intro_to_ezsummary_0.2.0.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 110-114 (intro_to_ezsummary_0.2.0.Rmd)
Error: processing vignette 'intro_to_ezsummary_0.2.0.Rmd' failed with diagnostics:
Duplicate identifiers for rows (25, 26, 27), (31, 32, 33), (7, 8, 9), (13, 14, 15), (28, 29, 30), (10, 11, 12), (4, 5, 6), (19, 20, 21), (22, 23, 24), (16, 17, 18), (55, 56, 57), (61, 62, 63), (37, 38, 39), (43, 44, 45), (58, 59, 60), (40, 41, 42), (34, 35, 36), (49, 50, 51), (52, 53, 54), (46, 47, 48), (1, 2, 3)
--- failed re-building ‘intro_to_ezsummary_0.2.0.Rmd’
SUMMARY: processing the following file failed:
‘intro_to_ezsummary_0.2.0.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [1s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("ezsummary")
>
> test_check("ezsummary")
── 1. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2))[2] not equivalent to c("variable").
1/1 mismatches
x[1]: "count"
y[1]: "variable"
── 2. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2, n = T))[2:3] not equivalent to c("variable", "n").
2/2 mismatches
x[1]: "n"
y[1]: "variable"
x[2]: "count"
y[2]: "n"
── 3. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2)[2, 2]) not equivalent to c("gear_4").
1/1 mismatches
x[1]: "13"
y[1]: "gear_4"
── 4. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2, n = T)[2, 2:3]) not equivalent to c("gear_4", "19").
2/2 mismatches
x[1]: "32"
y[1]: "gear_4"
x[2]: "13"
y[2]: "19"
── 5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1
Duplicate identifiers for rows (1, 2), (3, 4), (5, 6)
1: expect_equal(names(ezsummary_quantitative(df2)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:19
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df2)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 6. Error: ezsummary_quantitative can work with 2 variables with grouping info
Duplicate identifiers for rows (5, 6), (3, 4), (9, 10), (7, 8), (1, 2)
1: expect_equal(names(ezsummary_quantitative(df4)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:33
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df4)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 7. Error: ezsummary_quantitative can handle NAs when running with quantile=TR
Can't find columns `mean`, `sd`, `q0`, `q25`, `q50`, … (and 2 more) in `.data`.
1: expect_equivalent(df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0,
q25, q50, q75, q100), expected = structure(list(q0 = -2, q25 = -1, q50 = 0, q75 = 1,
q100 = 2), class = c("tbl_df", "tbl", "data.frame"), row.names = as.integer(1))) at testthat/test-ezsummary_quantitative.R:40
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0, q25, q50, q75,
q100)
5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
6: eval(quote(`_fseq`(`_lhs`)), env, env)
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: `_fseq`(`_lhs`)
9: freduce(value, `_function_list`)
10: function_list[[i]](value)
11: ezsummary(., quantile = TRUE)
12: do.call("ezsummary_q", append(list(tbl = tbl_q), ez_options_q))
13: ezsummary_q(tbl = structure(list(x = c(-2, 2, 0, NA), y = c(1, 1, 1, 1)), class = c("grouped_df",
"tbl_df", "tbl", "data.frame"), row.names = c(NA, 4L), groups = structure(list(y = 1,
.rows = list(1:4)), row.names = c(NA, -1L), class = c("tbl_df", "tbl", "data.frame"
), .drop = TRUE), var_types = c(x = "q", y = "q")), quantile = TRUE)
14: tbl_summary[c(if (flavor == "long" & n_group != 0) group_name else NULL, "variable",
tasks_names)]
15: `[.tbl_df`(tbl_summary, c(if (flavor == "long" & n_group != 0) group_name else NULL,
"variable", tasks_names))
16: check_names_df(i, x)
17: check_names_before_after_character(j, names(unclass(x)))
18: abort(error_unknown_names(unknown_names))
══ testthat results ═══════════════════════════════════════════════════════════
OK: 20 SKIPPED: 0 FAILED: 7
1. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#29)
2. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#31)
3. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#33)
4. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#35)
5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1 variable (@test-ezsummary_quantitative.R#19)
6. Error: ezsummary_quantitative can work with 2 variables with grouping info (@test-ezsummary_quantitative.R#33)
7. Error: ezsummary_quantitative can handle NAs when running with quantile=TRUE (@test-ezsummary_quantitative.R#40)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in ‘ezsummary-Ex.R’ failed
The error most likely occurred in:
> ### Name: ezmarkup
> ### Title: Easy way to "markup" a table before it is sent to be displayed
> ### Aliases: ezmarkup
>
> ### ** Examples
>
> library(dplyr)
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> dt <- mtcars %>% group_by(cyl) %>% select(gear, carb) %>% ezsummary_categorical(n=TRUE)
Adding missing grouping variables: `cyl`
>
> ezmarkup(dt, "...[.(.)]")
Error in ezmarkup(dt, "...[.(.)]") :
The number of dots(.) you entered does not match up with the number of columns in the table. Please review your pattern expression.
Note: If you do want to Add an actual dot, please use `.` to denote that specific dot
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("ezsummary")
>
> test_check("ezsummary")
── 1. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2))[2] not equivalent to c("variable").
1/1 mismatches
x[1]: "count"
y[1]: "variable"
── 2. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2, n = T))[2:3] not equivalent to c("variable", "n").
2/2 mismatches
x[1]: "n"
y[1]: "variable"
x[2]: "count"
y[2]: "n"
── 3. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2)[2, 2]) not equivalent to c("gear_4").
1/1 mismatches
x[1]: "13"
y[1]: "gear_4"
── 4. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2, n = T)[2, 2:3]) not equivalent to c("gear_4", "19").
2/2 mismatches
x[1]: "32"
y[1]: "gear_4"
x[2]: "13"
y[2]: "19"
── 5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1
Duplicate identifiers for rows (1, 2), (3, 4), (5, 6)
1: expect_equal(names(ezsummary_quantitative(df2)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:19
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df2)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 6. Error: ezsummary_quantitative can work with 2 variables with grouping info
Duplicate identifiers for rows (5, 6), (3, 4), (9, 10), (7, 8), (1, 2)
1: expect_equal(names(ezsummary_quantitative(df4)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:33
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df4)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 7. Error: ezsummary_quantitative can handle NAs when running with quantile=TR
Can't find columns `mean`, `sd`, `q0`, `q25`, `q50`, … (and 2 more) in `.data`.
1: expect_equivalent(df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0,
q25, q50, q75, q100), expected = structure(list(q0 = -2, q25 = -1, q50 = 0, q75 = 1,
q100 = 2), class = c("tbl_df", "tbl", "data.frame"), row.names = as.integer(1))) at testthat/test-ezsummary_quantitative.R:40
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0, q25, q50, q75,
q100)
5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
6: eval(quote(`_fseq`(`_lhs`)), env, env)
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: `_fseq`(`_lhs`)
9: freduce(value, `_function_list`)
10: function_list[[i]](value)
11: ezsummary(., quantile = TRUE)
12: do.call("ezsummary_q", append(list(tbl = tbl_q), ez_options_q))
13: ezsummary_q(tbl = structure(list(x = c(-2, 2, 0, NA), y = c(1, 1, 1, 1)), class = c("grouped_df",
"tbl_df", "tbl", "data.frame"), row.names = c(NA, 4L), groups = structure(list(y = 1,
.rows = list(1:4)), row.names = c(NA, -1L), class = c("tbl_df", "tbl", "data.frame"
), .drop = TRUE), var_types = c(x = "q", y = "q")), quantile = TRUE)
14: tbl_summary[c(if (flavor == "long" & n_group != 0) group_name else NULL, "variable",
tasks_names)]
15: `[.tbl_df`(tbl_summary, c(if (flavor == "long" & n_group != 0) group_name else NULL,
"variable", tasks_names))
16: check_names_df(i, x)
17: check_names_before_after_character(j, names(unclass(x)))
18: abort(error_unknown_names(unknown_names))
══ testthat results ═══════════════════════════════════════════════════════════
OK: 20 SKIPPED: 0 FAILED: 7
1. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#29)
2. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#31)
3. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#33)
4. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#35)
5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1 variable (@test-ezsummary_quantitative.R#19)
6. Error: ezsummary_quantitative can work with 2 variables with grouping info (@test-ezsummary_quantitative.R#33)
7. Error: ezsummary_quantitative can handle NAs when running with quantile=TRUE (@test-ezsummary_quantitative.R#40)
Error: testthat unit tests failed
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘intro_to_ezsummary_0.2.0.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 110-114 (intro_to_ezsummary_0.2.0.Rmd)
Error: processing vignette 'intro_to_ezsummary_0.2.0.Rmd' failed with diagnostics:
Duplicate identifiers for rows (25, 26, 27), (31, 32, 33), (7, 8, 9), (13, 14, 15), (28, 29, 30), (10, 11, 12), (4, 5, 6), (19, 20, 21), (22, 23, 24), (16, 17, 18), (55, 56, 57), (61, 62, 63), (37, 38, 39), (43, 44, 45), (58, 59, 60), (40, 41, 42), (34, 35, 36), (49, 50, 51), (52, 53, 54), (46, 47, 48), (1, 2, 3)
--- failed re-building ‘intro_to_ezsummary_0.2.0.Rmd’
SUMMARY: processing the following file failed:
‘intro_to_ezsummary_0.2.0.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [1s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library("testthat")
> library("ezsummary")
>
> test_check("ezsummary")
-- 1. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2))[2] not equivalent to c("variable").
1/1 mismatches
x[1]: "count"
y[1]: "variable"
-- 2. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2, n = T))[2:3] not equivalent to c("variable", "n").
2/2 mismatches
x[1]: "n"
y[1]: "variable"
x[2]: "count"
y[2]: "n"
-- 3. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2)[2, 2]) not equivalent to c("gear_4").
1/1 mismatches
x[1]: "13"
y[1]: "gear_4"
-- 4. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2, n = T)[2, 2:3]) not equivalent to c("gear_4", "19").
2/2 mismatches
x[1]: "32"
y[1]: "gear_4"
x[2]: "13"
y[2]: "19"
-- 5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1
Duplicate identifiers for rows (1, 2), (3, 4), (5, 6)
1: expect_equal(names(ezsummary_quantitative(df2)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:19
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df2)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
-- 6. Error: ezsummary_quantitative can work with 2 variables with grouping info
Duplicate identifiers for rows (5, 6), (3, 4), (9, 10), (7, 8), (1, 2)
1: expect_equal(names(ezsummary_quantitative(df4)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:33
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df4)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
-- 7. Error: ezsummary_quantitative can handle NAs when running with quantile=TR
Can't find columns `mean`, `sd`, `q0`, `q25`, `q50`, ... (and 2 more) in `.data`.
1: expect_equivalent(df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0,
q25, q50, q75, q100), expected = structure(list(q0 = -2, q25 = -1, q50 = 0, q75 = 1,
q100 = 2), class = c("tbl_df", "tbl", "data.frame"), row.names = as.integer(1))) at testthat/test-ezsummary_quantitative.R:40
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0, q25, q50, q75,
q100)
5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
6: eval(quote(`_fseq`(`_lhs`)), env, env)
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: `_fseq`(`_lhs`)
9: freduce(value, `_function_list`)
10: function_list[[i]](value)
11: ezsummary(., quantile = TRUE)
12: do.call("ezsummary_q", append(list(tbl = tbl_q), ez_options_q))
13: ezsummary_q(tbl = structure(list(x = c(-2, 2, 0, NA), y = c(1, 1, 1, 1)), class = c("grouped_df",
"tbl_df", "tbl", "data.frame"), row.names = c(NA, 4L), groups = structure(list(y = 1,
.rows = list(1:4)), row.names = c(NA, -1L), class = c("tbl_df", "tbl", "data.frame"
), .drop = TRUE), var_types = c(x = "q", y = "q")), quantile = TRUE)
14: tbl_summary[c(if (flavor == "long" & n_group != 0) group_name else NULL, "variable",
tasks_names)]
15: `[.tbl_df`(tbl_summary, c(if (flavor == "long" & n_group != 0) group_name else NULL,
"variable", tasks_names))
16: check_names_df(i, x)
17: check_names_before_after_character(j, names(unclass(x)))
18: abort(error_unknown_names(unknown_names))
== testthat results ===========================================================
OK: 20 SKIPPED: 0 FAILED: 7
1. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#29)
2. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#31)
3. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#33)
4. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#35)
5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1 variable (@test-ezsummary_quantitative.R#19)
6. Error: ezsummary_quantitative can work with 2 variables with grouping info (@test-ezsummary_quantitative.R#33)
7. Error: ezsummary_quantitative can handle NAs when running with quantile=TRUE (@test-ezsummary_quantitative.R#40)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library("testthat")
> library("ezsummary")
>
> test_check("ezsummary")
── 1. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2))[2] not equivalent to c("variable").
1/1 mismatches
x[1]: "count"
y[1]: "variable"
── 2. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2, n = T))[2:3] not equivalent to c("variable", "n").
2/2 mismatches
x[1]: "n"
y[1]: "variable"
x[2]: "count"
y[2]: "n"
── 3. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2)[2, 2]) not equivalent to c("gear_4").
1/1 mismatches
x[1]: "13"
y[1]: "gear_4"
── 4. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2, n = T)[2, 2:3]) not equivalent to c("gear_4", "19").
2/2 mismatches
x[1]: "32"
y[1]: "gear_4"
x[2]: "13"
y[2]: "19"
── 5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1
Duplicate identifiers for rows (1, 2), (3, 4), (5, 6)
1: expect_equal(names(ezsummary_quantitative(df2)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:19
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df2)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 6. Error: ezsummary_quantitative can work with 2 variables with grouping info
Duplicate identifiers for rows (5, 6), (3, 4), (9, 10), (7, 8), (1, 2)
1: expect_equal(names(ezsummary_quantitative(df4)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:33
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df4)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
── 7. Error: ezsummary_quantitative can handle NAs when running with quantile=TR
Can't find columns `mean`, `sd`, `q0`, `q25`, `q50`, … (and 2 more) in `.data`.
1: expect_equivalent(df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0,
q25, q50, q75, q100), expected = structure(list(q0 = -2, q25 = -1, q50 = 0, q75 = 1,
q100 = 2), class = c("tbl_df", "tbl", "data.frame"), row.names = as.integer(1))) at testthat/test-ezsummary_quantitative.R:40
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0, q25, q50, q75,
q100)
5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
6: eval(quote(`_fseq`(`_lhs`)), env, env)
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: `_fseq`(`_lhs`)
9: freduce(value, `_function_list`)
10: function_list[[i]](value)
11: ezsummary(., quantile = TRUE)
12: do.call("ezsummary_q", append(list(tbl = tbl_q), ez_options_q))
13: ezsummary_q(tbl = structure(list(x = c(-2, 2, 0, NA), y = c(1, 1, 1, 1)), class = c("grouped_df",
"tbl_df", "tbl", "data.frame"), row.names = c(NA, 4L), groups = structure(list(y = 1,
.rows = list(1:4)), row.names = c(NA, -1L), class = c("tbl_df", "tbl", "data.frame"
), .drop = TRUE), var_types = c(x = "q", y = "q")), quantile = TRUE)
14: tbl_summary[c(if (flavor == "long" & n_group != 0) group_name else NULL, "variable",
tasks_names)]
15: `[.tbl_df`(tbl_summary, c(if (flavor == "long" & n_group != 0) group_name else NULL,
"variable", tasks_names))
16: check_names_df(i, x)
17: check_names_before_after_character(j, names(unclass(x)))
18: abort(error_unknown_names(unknown_names))
══ testthat results ═══════════════════════════════════════════════════════════
OK: 20 SKIPPED: 0 FAILED: 7
1. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#29)
2. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#31)
3. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#33)
4. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#35)
5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1 variable (@test-ezsummary_quantitative.R#19)
6. Error: ezsummary_quantitative can work with 2 variables with grouping info (@test-ezsummary_quantitative.R#33)
7. Error: ezsummary_quantitative can handle NAs when running with quantile=TRUE (@test-ezsummary_quantitative.R#40)
Error: testthat unit tests failed
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 110-114 (intro_to_ezsummary_0.2.0.Rmd)
Error: processing vignette ‘intro_to_ezsummary_0.2.0.Rmd’ failed with diagnostics:
Duplicate identifiers for rows (25, 26, 27), (31, 32, 33), (7, 8, 9), (13, 14, 15), (28, 29, 30), (10, 11, 12), (4, 5, 6), (19, 20, 21), (22, 23, 24), (16, 17, 18), (55, 56, 57), (61, 62, 63), (37, 38, 39), (43, 44, 45), (58, 59, 60), (40, 41, 42), (34, 35, 36), (49, 50, 51), (52, 53, 54), (46, 47, 48), (1, 2, 3)
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 110-114 (intro_to_ezsummary_0.2.0.Rmd)
Error: processing vignette 'intro_to_ezsummary_0.2.0.Rmd' failed with diagnostics:
Duplicate identifiers for rows (25, 26, 27), (31, 32, 33), (7, 8, 9), (13, 14, 15), (28, 29, 30), (10, 11, 12), (4, 5, 6), (19, 20, 21), (22, 23, 24), (16, 17, 18), (55, 56, 57), (61, 62, 63), (37, 38, 39), (43, 44, 45), (58, 59, 60), (40, 41, 42), (34, 35, 36), (49, 50, 51), (52, 53, 54), (46, 47, 48), (1, 2, 3)
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [2s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library("testthat")
> library("ezsummary")
>
> test_check("ezsummary")
-- 1. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2))[2] not equivalent to c("variable").
1/1 mismatches
x[1]: "count"
y[1]: "variable"
-- 2. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2, n = T))[2:3] not equivalent to c("variable", "n").
2/2 mismatches
x[1]: "n"
y[1]: "variable"
x[2]: "count"
y[2]: "n"
-- 3. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2)[2, 2]) not equivalent to c("gear_4").
1/1 mismatches
x[1]: "13"
y[1]: "gear_4"
-- 4. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2, n = T)[2, 2:3]) not equivalent to c("gear_4", "19").
2/2 mismatches
x[1]: "32"
y[1]: "gear_4"
x[2]: "13"
y[2]: "19"
-- 5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1
Duplicate identifiers for rows (1, 2), (3, 4), (5, 6)
1: expect_equal(names(ezsummary_quantitative(df2)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:19
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df2)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
-- 6. Error: ezsummary_quantitative can work with 2 variables with grouping info
Duplicate identifiers for rows (5, 6), (3, 4), (9, 10), (7, 8), (1, 2)
1: expect_equal(names(ezsummary_quantitative(df4)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:33
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df4)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
-- 7. Error: ezsummary_quantitative can handle NAs when running with quantile=TR
Can't find columns `mean`, `sd`, `q0`, `q25`, `q50`, ... (and 2 more) in `.data`.
1: expect_equivalent(df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0,
q25, q50, q75, q100), expected = structure(list(q0 = -2, q25 = -1, q50 = 0, q75 = 1,
q100 = 2), class = c("tbl_df", "tbl", "data.frame"), row.names = as.integer(1))) at testthat/test-ezsummary_quantitative.R:40
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0, q25, q50, q75,
q100)
5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
6: eval(quote(`_fseq`(`_lhs`)), env, env)
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: `_fseq`(`_lhs`)
9: freduce(value, `_function_list`)
10: function_list[[i]](value)
11: ezsummary(., quantile = TRUE)
12: do.call("ezsummary_q", append(list(tbl = tbl_q), ez_options_q))
13: ezsummary_q(tbl = structure(list(x = c(-2, 2, 0, NA), y = c(1, 1, 1, 1)), class = c("grouped_df",
"tbl_df", "tbl", "data.frame"), row.names = c(NA, 4L), groups = structure(list(y = 1,
.rows = list(1:4)), row.names = c(NA, -1L), class = c("tbl_df", "tbl", "data.frame"
), .drop = TRUE), var_types = c(x = "q", y = "q")), quantile = TRUE)
14: tbl_summary[c(if (flavor == "long" & n_group != 0) group_name else NULL, "variable",
tasks_names)]
15: `[.tbl_df`(tbl_summary, c(if (flavor == "long" & n_group != 0) group_name else NULL,
"variable", tasks_names))
16: check_names_df(i, x)
17: check_names_before_after_character(j, names(unclass(x)))
18: abort(error_unknown_names(unknown_names))
== testthat results ===========================================================
OK: 20 SKIPPED: 0 FAILED: 7
1. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#29)
2. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#31)
3. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#33)
4. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#35)
5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1 variable (@test-ezsummary_quantitative.R#19)
6. Error: ezsummary_quantitative can work with 2 variables with grouping info (@test-ezsummary_quantitative.R#33)
7. Error: ezsummary_quantitative can handle NAs when running with quantile=TRUE (@test-ezsummary_quantitative.R#40)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running 'testthat.R' [3s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library("testthat")
> library("ezsummary")
>
> test_check("ezsummary")
-- 1. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2))[2] not equivalent to c("variable").
1/1 mismatches
x[1]: "count"
y[1]: "variable"
-- 2. Failure: ezsummary_c can't rename the variables for data with grouping inf
names(ezsummary_categorical(df2, n = T))[2:3] not equivalent to c("variable", "n").
2/2 mismatches
x[1]: "n"
y[1]: "variable"
x[2]: "count"
y[2]: "n"
-- 3. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2)[2, 2]) not equivalent to c("gear_4").
1/1 mismatches
x[1]: "13"
y[1]: "gear_4"
-- 4. Failure: ezsummary_c can't rename the variables for data with grouping inf
as.character(ezsummary_categorical(df2, n = T)[2, 2:3]) not equivalent to c("gear_4", "19").
2/2 mismatches
x[1]: "32"
y[1]: "gear_4"
x[2]: "13"
y[2]: "19"
-- 5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1
Duplicate identifiers for rows (1, 2), (3, 4), (5, 6)
1: expect_equal(names(ezsummary_quantitative(df2)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:19
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df2)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
-- 6. Error: ezsummary_quantitative can work with 2 variables with grouping info
Duplicate identifiers for rows (5, 6), (3, 4), (9, 10), (7, 8), (1, 2)
1: expect_equal(names(ezsummary_quantitative(df4)), expected = c("am", "variable", "mean",
"sd")) at testthat/test-ezsummary_quantitative.R:33
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: ezsummary_quantitative(df4)
5: tbl_summary %>% spread(analysis, value, fill = fill) %>% ungroup() %>% mutate(variable = factor(variable,
levels = setdiff(var_name, group_name))) %>% arrange_(c("variable", group_name))
6: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: eval(quote(`_fseq`(`_lhs`)), env, env)
9: `_fseq`(`_lhs`)
10: freduce(value, `_function_list`)
11: function_list[[i]](value)
12: spread(., analysis, value, fill = fill)
13: spread.data.frame(., analysis, value, fill = fill)
14: abort(glue("Duplicate identifiers for rows {rows}"))
-- 7. Error: ezsummary_quantitative can handle NAs when running with quantile=TR
Can't find columns `mean`, `sd`, `q0`, `q25`, `q50`, ... (and 2 more) in `.data`.
1: expect_equivalent(df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0,
q25, q50, q75, q100), expected = structure(list(q0 = -2, q25 = -1, q50 = 0, q75 = 1,
q100 = 2), class = c("tbl_df", "tbl", "data.frame"), row.names = as.integer(1))) at testthat/test-ezsummary_quantitative.R:40
2: quasi_label(enquo(object), label)
3: eval_bare(get_expr(quo), get_env(quo))
4: df5 %>% group_by(y) %>% ezsummary(quantile = TRUE) %>% select(q0, q25, q50, q75,
q100)
5: withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
6: eval(quote(`_fseq`(`_lhs`)), env, env)
7: eval(quote(`_fseq`(`_lhs`)), env, env)
8: `_fseq`(`_lhs`)
9: freduce(value, `_function_list`)
10: function_list[[i]](value)
11: ezsummary(., quantile = TRUE)
12: do.call("ezsummary_q", append(list(tbl = tbl_q), ez_options_q))
13: ezsummary_q(tbl = structure(list(x = c(-2, 2, 0, NA), y = c(1, 1, 1, 1)), row.names = c(NA,
4L), class = c("grouped_df", "tbl_df", "tbl", "data.frame"), groups = structure(list(
y = 1, .rows = list(1:4)), .Names = c("y", ".rows"), row.names = c(NA, -1L), class = c("tbl_df",
"tbl", "data.frame"), .drop = TRUE), var_types = structure(c("q", "q"), .Names = c("x",
"y")), .Names = c("x", "y")), quantile = TRUE)
14: tbl_summary[c(if (flavor == "long" & n_group != 0) group_name else NULL, "variable",
tasks_names)]
15: `[.tbl_df`(tbl_summary, c(if (flavor == "long" & n_group != 0) group_name else NULL,
"variable", tasks_names))
16: check_names_df(i, x)
17: check_names_before_after_character(j, names(unclass(x)))
18: abort(error_unknown_names(unknown_names))
== testthat results ===========================================================
OK: 20 SKIPPED: 0 FAILED: 7
1. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#29)
2. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#31)
3. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#33)
4. Failure: ezsummary_c can't rename the variables for data with grouping info (@test-ezsummary_categorical.R#35)
5. Error: ezsummary_quantitative can evaluate grouping info correctly with 1 variable (@test-ezsummary_quantitative.R#19)
6. Error: ezsummary_quantitative can work with 2 variables with grouping info (@test-ezsummary_quantitative.R#33)
7. Error: ezsummary_quantitative can handle NAs when running with quantile=TRUE (@test-ezsummary_quantitative.R#40)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64