Last updated on 2019-03-08 16:52:25 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2-0 | 1.91 | 22.16 | 24.07 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2-0 | 1.46 | 17.69 | 19.15 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2-0 | 20.90 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2-0 | 19.60 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.2-0 | 5.00 | 62.00 | 67.00 | OK | |
| r-patched-linux-x86_64 | 1.2-0 | 1.24 | 20.71 | 21.95 | ERROR | |
| r-patched-solaris-x86 | 1.2-0 | 42.80 | ERROR | |||
| r-release-linux-x86_64 | 1.2-0 | 1.16 | 20.81 | 21.97 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.2-0 | 3.00 | 54.00 | 57.00 | OK | |
| r-release-osx-x86_64 | 1.2-0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2-0 | 2.00 | 61.00 | 63.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2-0 | OK |
Version: 1.2-0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'icesVocab'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.2-0
Check: examples
Result: ERROR
Running examples in 'icesDatras-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getCatchWgt
> ### Title: Get Catch Weights
> ### Aliases: getCatchWgt
>
> ### ** Examples
>
> getCatchWgt(survey = "ROCKALL", years = 2002, quarters = 3, aphia = 126437)
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Extracting total catch weight by species and haul for 1 species
RecordType Survey Quarter Country Ship Gear SweepLngt GearExp DoorType StNo
1 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 438
2 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 437
3 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 435
4 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 434
5 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 436
6 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 439
7 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 425
8 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 450
9 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 424
10 HH ROCKALL 3 SCO SCO3 GOV NA NA <NA> 423
11 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 422
12 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 421
13 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 447
14 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 448
15 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 428
16 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 449
17 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 427
18 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 426
19 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 444
20 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 430
21 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 431
22 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 445
23 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 429
24 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 446
25 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 433
26 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 442
27 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 432
28 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 440
29 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 441
30 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 443
HaulNo Year Month Day TimeShot Stratum HaulDur DayNight ShootLat ShootLong
1 18 2002 9 4 822 NA 30 D 56.9500 -13.7667
2 17 2002 9 4 656 NA 30 D 57.0167 -13.7833
3 15 2002 9 3 1955 NA 30 N 57.0333 -14.2167
4 14 2002 9 3 1822 NA 30 D 57.1000 -14.3000
5 16 2002 9 4 514 NA 30 D 57.1000 -13.9833
6 19 2002 9 4 1009 NA 30 D 57.1167 -13.5500
7 5 2002 9 2 1948 NA 30 N 57.7000 -13.7333
8 30 2002 9 5 1214 NA 30 D 57.7167 -13.3833
9 4 2002 9 2 1826 NA 30 D 57.7833 -13.8667
10 3 2002 9 2 1335 NA 30 D 57.8000 -13.7667
11 2 2002 9 2 1153 NA 30 D 57.8500 -13.6333
12 1 2002 9 2 1003 NA 30 D 57.9000 -13.6167
13 27 2002 9 5 752 NA 30 D 57.4333 -13.5667
14 28 2002 9 5 908 NA 30 D 57.5000 -13.4333
15 8 2002 9 3 849 NA 30 D 57.5667 -14.0000
16 29 2002 9 5 1036 NA 30 D 57.5667 -13.4333
17 7 2002 9 3 723 NA 30 D 57.6000 -14.0667
18 6 2002 9 3 546 NA 30 D 57.6667 -14.0167
19 24 2002 9 4 1748 NA 30 D 57.3333 -13.7167
20 10 2002 9 3 1150 NA 30 D 57.3500 -14.1833
21 11 2002 9 3 1307 NA 28 D 57.3500 -14.1167
22 25 2002 9 4 1909 NA 30 N 57.3667 -13.5500
23 9 2002 9 3 1040 NA 30 D 57.4167 -14.2333
24 26 2002 9 5 622 NA 30 D 57.4333 -13.7667
25 13 2002 9 3 1702 NA 30 D 57.1667 -14.1000
26 22 2002 9 4 1506 NA 30 D 57.2167 -13.9167
27 12 2002 9 3 1514 NA 30 D 57.2333 -14.1500
28 20 2002 9 4 1201 NA 30 D 57.2333 -13.6000
29 21 2002 9 4 1318 NA 30 D 57.2667 -13.6500
30 23 2002 9 4 1628 NA 30 D 57.3248 -13.9185
HaulLat HaulLong StatRec Depth HaulVal HydroStNo StdSpecRecCode
1 56.9500 -13.7167 42D6 183 V NA 1
2 57.0167 -13.8333 43D6 183 V NA 1
3 57.0500 -14.1500 43D5 174 V NA 1
4 57.0667 -14.3333 43D5 175 V NA 1
5 57.1000 -13.9167 43D6 175 V NA 1
6 57.1333 -13.5167 43D6 197 V NA 1
7 57.7000 -13.6667 44D6 142 V NA 1
8 57.7333 -13.4000 44D6 158 V NA 1
9 57.7667 -13.8167 44D6 154 V NA 1
10 57.7667 -13.8000 44D6 158 I NA 1
11 57.8333 -13.5833 44D6 160 V NA 1
12 57.9000 -13.6833 44D6 190 V NA 1
13 57.4667 -13.5333 43D6 160 V NA 1
14 57.5167 -13.4000 44D6 170 V NA 1
15 57.5333 -14.0000 44D5 160 V NA 1
16 57.6000 -13.4667 44D6 160 V NA 1
17 57.6333 -14.1167 44D5 165 V NA 1
18 57.6667 -14.0833 44D5 158 V NA 1
19 57.3500 -13.6667 43D6 156 V NA 1
20 57.3667 -14.1333 43D5 180 V NA 1
21 57.3167 -14.1500 43D5 164 V NA 1
22 57.3667 -13.4833 43D6 172 V NA 1
23 57.3833 -14.2167 43D5 170 V NA 1
24 57.4500 -13.7167 43D6 150 V NA 1
25 57.1500 -14.1667 43D5 165 V NA 1
26 57.2500 -13.8833 43D6 164 V NA 1
27 57.2000 -14.2000 43D5 168 V NA 1
28 57.2500 -13.5833 43D6 184 V NA 1
29 57.2500 -13.6833 43D6 174 V NA 1
30 57.3453 -13.8640 43D6 155 V NA 1
BycSpecRecCode DataType Netopening Rigging Tickler Distance Warplngt Warpdia
1 1 C 4.4 NA NA 3666 560 28
2 1 C 4.2 NA NA 3654 600 28
3 1 C 4.5 NA NA 3658 520 28
4 1 C 4.3 NA NA 3670 520 28
5 1 C 4.2 NA NA 3932 560 28
6 1 C 4.2 NA NA 3869 600 28
7 1 C 4.5 NA NA 3787 480 28
8 1 C -9.0 NA NA 3432 470 28
9 1 C 4.7 NA NA 3817 480 28
10 1 C -9.0 NA NA NA NA NA
11 1 C 4.4 NA NA 3768 480 28
12 1 C 4.4 NA NA 3960 570 28
13 1 C 4.4 NA NA 3888 480 28
14 1 C 4.7 NA NA 3617 500 28
15 1 C 4.6 NA NA 3755 480 28
16 1 C -9.0 NA NA 3454 450 28
17 1 C 4.7 NA NA 3653 480 28
18 1 C 4.7 NA NA 3733 460 28
19 1 C 4.4 NA NA 3978 500 28
20 1 C 4.3 NA NA 3498 570 28
21 1 C 4.3 NA NA 3426 560 28
22 1 C 4.3 NA NA 3890 570 28
23 1 C 4.5 NA NA 3818 500 28
24 1 C 4.3 NA NA 3708 450 28
25 1 C 4.3 NA NA 3808 480 28
26 1 C 4.3 NA NA 3952 560 28
27 1 C 4.2 NA NA 3819 560 28
28 1 C 4.2 NA NA 3572 600 28
29 1 C 4.3 NA NA 3517 530 28
30 1 C 4.3 NA NA 3984 500 28
WarpDen DoorSurface DoorWgt DoorSpread WingSpread Buoyancy KiteDim
1 NA 4.5 1100 84 19 186 0.7
2 NA 4.5 1100 86 20 186 0.7
3 NA 4.5 1100 86 19 186 0.7
4 NA 4.5 1100 90 19 186 0.7
5 NA 4.5 1100 86 22 186 0.7
6 NA 4.5 1100 87 20 186 0.7
7 NA 4.5 1100 88 -9 186 0.7
8 NA 4.5 1100 98 22 186 0.7
9 NA 4.5 1100 93 24 186 0.7
10 NA -9.0 NA -9 20 NA -9.0
11 NA 4.5 1100 88 20 186 0.7
12 NA 4.5 1100 91 21 186 0.7
13 NA 4.5 1100 90 20 186 0.7
14 NA 4.5 1100 88 20 186 0.7
15 NA 4.5 1100 87 19 186 0.7
16 NA 4.5 1100 90 20 186 0.7
17 NA 4.5 1100 87 19 186 0.7
18 NA 4.5 1100 89 20 186 0.7
19 NA 4.5 1100 86 20 186 0.7
20 NA 4.5 1100 89 20 186 0.7
21 NA 4.5 1100 89 21 186 0.7
22 NA 4.5 1100 88 23 186 0.7
23 NA 4.5 1100 87 20 186 0.7
24 NA 4.5 1100 91 20 186 0.7
25 NA 4.5 1100 90 19 186 0.7
26 NA 4.5 1100 88 21 186 0.7
27 NA 4.5 1100 89 20 186 0.7
28 NA 4.5 1100 86 20 186 0.7
29 NA 4.5 1100 84 20 186 0.7
30 NA 4.5 1100 89 21 186 0.7
WgtGroundRope TowDir GroundSpeed SpeedWater SurCurDir SurCurSpeed BotCurDir
1 NA 90 3.9 4.0 260 0.1 NA
2 NA 230 3.8 3.9 280 0.1 NA
3 NA 56 3.9 4.0 200 0.1 NA
4 NA 208 4.0 4.0 204 0.0 NA
5 NA 165 4.4 4.3 350 0.1 NA
6 NA 27 4.2 4.2 150 0.1 NA
7 NA 70 4.0 4.1 201 0.2 NA
8 NA 325 3.7 3.7 170 0.2 NA
9 NA 107 4.1 4.1 153 0.1 NA
10 NA 213 4.1 4.2 241 0.1 NA
11 NA 148 3.9 4.1 200 0.2 NA
12 NA 260 4.1 4.2 190 0.1 NA
13 NA 21 4.1 4.2 16 0.2 NA
14 NA 20 3.9 4.0 95 0.3 NA
15 NA 180 4.0 4.0 121 0.1 NA
16 NA 334 3.7 3.8 90 0.1 NA
17 NA 314 3.9 4.0 198 0.1 NA
18 NA 260 4.1 4.1 161 0.2 NA
19 NA 47 4.3 4.3 9 0.2 NA
20 NA 60 3.8 3.8 45 0.2 NA
21 NA 222 4.0 4.0 49 0.1 NA
22 NA 50 4.2 4.2 350 0.2 NA
23 NA 165 4.1 4.1 194 0.2 NA
24 NA 49 4.0 4.0 59 0.1 NA
25 NA 250 4.1 4.1 198 0.2 NA
26 NA 30 4.3 4.3 59 0.2 NA
27 NA 235 4.1 4.2 280 0.1 NA
28 NA 25 3.8 3.9 130 0.1 NA
29 NA 210 3.7 3.8 71 0.1 NA
30 NA 60 4.2 4.3 330 0.2 NA
BotCurSpeed WindDir WindSpeed SwellDir SwellHeight SurTemp BotTemp SurSal
1 -9 240 6 240 1.0 -9 -9 -9
2 -9 240 4 240 1.0 -9 -9 -9
3 -9 340 8 340 1.0 -9 -9 -9
4 -9 340 8 340 1.0 -9 -9 -9
5 -9 240 3 240 1.0 -9 -9 -9
6 -9 240 6 240 1.0 -9 -9 -9
7 -9 220 4 220 2.0 -9 -9 -9
8 -9 270 18 270 2.5 -9 -9 -9
9 -9 220 5 220 2.0 -9 -9 -9
10 -9 180 4 240 2.0 -9 -9 -9
11 -9 180 6 200 2.0 -9 -9 -9
12 -9 180 5 200 2.0 -9 -9 -9
13 -9 270 15 270 2.0 -9 -9 -9
14 -9 270 14 270 2.5 -9 -9 -9
15 -9 30 11 360 2.0 -9 -9 -9
16 -9 270 18 270 2.5 -9 -9 -9
17 -9 20 13 360 2.0 -9 -9 -9
18 -9 2 10 360 2.0 -9 -9 -9
19 -9 220 14 220 2.0 -9 -9 -9
20 -9 340 8 340 1.5 -9 -9 -9
21 -9 340 5 340 1.5 -9 -9 -9
22 -9 180 16 180 2.0 -9 -9 -9
23 -9 30 8 360 1.0 -9 -9 -9
24 -9 250 10 250 2.0 -9 -9 -9
25 -9 340 8 340 1.0 -9 -9 -9
26 -9 220 13 220 1.5 -9 -9 -9
27 -9 340 9 340 1.5 -9 -9 -9
28 -9 240 9 240 1.0 -9 -9 -9
29 -9 220 13 220 1.5 -9 -9 -9
30 -9 220 14 220 2.0 -9 -9 -9
BotSal ThermoCline ThClineDepth DateofCalculation CatchWgt Valid_Aphia
1 -9 NA NA 20160219 157600 126437
2 -9 NA NA 20160219 227800 126437
3 -9 NA NA 20160219 374200 126437
4 -9 NA NA 20160219 399800 126437
5 -9 NA NA 20160219 94200 126437
6 -9 NA NA 20160219 374600 126437
7 -9 NA NA 20160219 358200 126437
8 -9 NA NA 20160219 406200 126437
9 -9 NA NA 20160219 357000 126437
10 -9 NA NA 20160219 0 126437
11 -9 NA NA 20160219 432200 126437
12 -9 NA NA 20160219 274000 126437
13 -9 NA NA 20160219 214200 126437
14 -9 NA NA 20160219 312000 126437
15 -9 NA NA 20160219 486600 126437
16 -9 NA NA 20160219 213600 126437
17 -9 NA NA 20160219 198200 126437
18 -9 NA NA 20160219 238800 126437
19 -9 NA NA 20160219 403800 126437
20 -9 NA NA 20160219 304200 126437
21 -9 NA NA 20160219 529714 126437
22 -9 NA NA 20160219 271400 126437
23 -9 NA NA 20160219 374200 126437
24 -9 NA NA 20160219 378000 126437
25 -9 NA NA 20160219 599000 126437
26 -9 NA NA 20160219 509400 126437
27 -9 NA NA 20160219 548800 126437
28 -9 NA NA 20160219 372000 126437
29 -9 NA NA 20160219 508400 126437
30 -9 NA NA 20160219 676800 126437
>
> # look up specific species
> aphia <- icesVocab::findAphia(c("cod", "haddock"))
Error in loadNamespace(name) : there is no package called 'icesVocab'
Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.2-0
Check: examples
Result: ERROR
Running examples in ‘icesDatras-Ex.R’ failed
The error most likely occurred in:
> ### Name: getCatchWgt
> ### Title: Get Catch Weights
> ### Aliases: getCatchWgt
>
> ### ** Examples
>
> getCatchWgt(survey = "ROCKALL", years = 2002, quarters = 3, aphia = 126437)
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Extracting total catch weight by species and haul for 1 species
RecordType Survey Quarter Country Ship Gear SweepLngt GearExp DoorType StNo
1 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 438
2 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 437
3 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 435
4 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 434
5 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 436
6 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 439
7 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 425
8 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 450
9 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 424
10 HH ROCKALL 3 SCO SCO3 GOV NA NA <NA> 423
11 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 422
12 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 421
13 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 447
14 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 448
15 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 428
16 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 449
17 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 427
18 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 426
19 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 444
20 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 430
21 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 431
22 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 445
23 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 429
24 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 446
25 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 433
26 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 442
27 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 432
28 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 440
29 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 441
30 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 443
HaulNo Year Month Day TimeShot Stratum HaulDur DayNight ShootLat ShootLong
1 18 2002 9 4 822 NA 30 D 56.9500 -13.7667
2 17 2002 9 4 656 NA 30 D 57.0167 -13.7833
3 15 2002 9 3 1955 NA 30 N 57.0333 -14.2167
4 14 2002 9 3 1822 NA 30 D 57.1000 -14.3000
5 16 2002 9 4 514 NA 30 D 57.1000 -13.9833
6 19 2002 9 4 1009 NA 30 D 57.1167 -13.5500
7 5 2002 9 2 1948 NA 30 N 57.7000 -13.7333
8 30 2002 9 5 1214 NA 30 D 57.7167 -13.3833
9 4 2002 9 2 1826 NA 30 D 57.7833 -13.8667
10 3 2002 9 2 1335 NA 30 D 57.8000 -13.7667
11 2 2002 9 2 1153 NA 30 D 57.8500 -13.6333
12 1 2002 9 2 1003 NA 30 D 57.9000 -13.6167
13 27 2002 9 5 752 NA 30 D 57.4333 -13.5667
14 28 2002 9 5 908 NA 30 D 57.5000 -13.4333
15 8 2002 9 3 849 NA 30 D 57.5667 -14.0000
16 29 2002 9 5 1036 NA 30 D 57.5667 -13.4333
17 7 2002 9 3 723 NA 30 D 57.6000 -14.0667
18 6 2002 9 3 546 NA 30 D 57.6667 -14.0167
19 24 2002 9 4 1748 NA 30 D 57.3333 -13.7167
20 10 2002 9 3 1150 NA 30 D 57.3500 -14.1833
21 11 2002 9 3 1307 NA 28 D 57.3500 -14.1167
22 25 2002 9 4 1909 NA 30 N 57.3667 -13.5500
23 9 2002 9 3 1040 NA 30 D 57.4167 -14.2333
24 26 2002 9 5 622 NA 30 D 57.4333 -13.7667
25 13 2002 9 3 1702 NA 30 D 57.1667 -14.1000
26 22 2002 9 4 1506 NA 30 D 57.2167 -13.9167
27 12 2002 9 3 1514 NA 30 D 57.2333 -14.1500
28 20 2002 9 4 1201 NA 30 D 57.2333 -13.6000
29 21 2002 9 4 1318 NA 30 D 57.2667 -13.6500
30 23 2002 9 4 1628 NA 30 D 57.3248 -13.9185
HaulLat HaulLong StatRec Depth HaulVal HydroStNo StdSpecRecCode
1 56.9500 -13.7167 42D6 183 V NA 1
2 57.0167 -13.8333 43D6 183 V NA 1
3 57.0500 -14.1500 43D5 174 V NA 1
4 57.0667 -14.3333 43D5 175 V NA 1
5 57.1000 -13.9167 43D6 175 V NA 1
6 57.1333 -13.5167 43D6 197 V NA 1
7 57.7000 -13.6667 44D6 142 V NA 1
8 57.7333 -13.4000 44D6 158 V NA 1
9 57.7667 -13.8167 44D6 154 V NA 1
10 57.7667 -13.8000 44D6 158 I NA 1
11 57.8333 -13.5833 44D6 160 V NA 1
12 57.9000 -13.6833 44D6 190 V NA 1
13 57.4667 -13.5333 43D6 160 V NA 1
14 57.5167 -13.4000 44D6 170 V NA 1
15 57.5333 -14.0000 44D5 160 V NA 1
16 57.6000 -13.4667 44D6 160 V NA 1
17 57.6333 -14.1167 44D5 165 V NA 1
18 57.6667 -14.0833 44D5 158 V NA 1
19 57.3500 -13.6667 43D6 156 V NA 1
20 57.3667 -14.1333 43D5 180 V NA 1
21 57.3167 -14.1500 43D5 164 V NA 1
22 57.3667 -13.4833 43D6 172 V NA 1
23 57.3833 -14.2167 43D5 170 V NA 1
24 57.4500 -13.7167 43D6 150 V NA 1
25 57.1500 -14.1667 43D5 165 V NA 1
26 57.2500 -13.8833 43D6 164 V NA 1
27 57.2000 -14.2000 43D5 168 V NA 1
28 57.2500 -13.5833 43D6 184 V NA 1
29 57.2500 -13.6833 43D6 174 V NA 1
30 57.3453 -13.8640 43D6 155 V NA 1
BycSpecRecCode DataType Netopening Rigging Tickler Distance Warplngt Warpdia
1 1 C 4.4 NA NA 3666 560 28
2 1 C 4.2 NA NA 3654 600 28
3 1 C 4.5 NA NA 3658 520 28
4 1 C 4.3 NA NA 3670 520 28
5 1 C 4.2 NA NA 3932 560 28
6 1 C 4.2 NA NA 3869 600 28
7 1 C 4.5 NA NA 3787 480 28
8 1 C -9.0 NA NA 3432 470 28
9 1 C 4.7 NA NA 3817 480 28
10 1 C -9.0 NA NA NA NA NA
11 1 C 4.4 NA NA 3768 480 28
12 1 C 4.4 NA NA 3960 570 28
13 1 C 4.4 NA NA 3888 480 28
14 1 C 4.7 NA NA 3617 500 28
15 1 C 4.6 NA NA 3755 480 28
16 1 C -9.0 NA NA 3454 450 28
17 1 C 4.7 NA NA 3653 480 28
18 1 C 4.7 NA NA 3733 460 28
19 1 C 4.4 NA NA 3978 500 28
20 1 C 4.3 NA NA 3498 570 28
21 1 C 4.3 NA NA 3426 560 28
22 1 C 4.3 NA NA 3890 570 28
23 1 C 4.5 NA NA 3818 500 28
24 1 C 4.3 NA NA 3708 450 28
25 1 C 4.3 NA NA 3808 480 28
26 1 C 4.3 NA NA 3952 560 28
27 1 C 4.2 NA NA 3819 560 28
28 1 C 4.2 NA NA 3572 600 28
29 1 C 4.3 NA NA 3517 530 28
30 1 C 4.3 NA NA 3984 500 28
WarpDen DoorSurface DoorWgt DoorSpread WingSpread Buoyancy KiteDim
1 NA 4.5 1100 84 19 186 0.7
2 NA 4.5 1100 86 20 186 0.7
3 NA 4.5 1100 86 19 186 0.7
4 NA 4.5 1100 90 19 186 0.7
5 NA 4.5 1100 86 22 186 0.7
6 NA 4.5 1100 87 20 186 0.7
7 NA 4.5 1100 88 -9 186 0.7
8 NA 4.5 1100 98 22 186 0.7
9 NA 4.5 1100 93 24 186 0.7
10 NA -9.0 NA -9 20 NA -9.0
11 NA 4.5 1100 88 20 186 0.7
12 NA 4.5 1100 91 21 186 0.7
13 NA 4.5 1100 90 20 186 0.7
14 NA 4.5 1100 88 20 186 0.7
15 NA 4.5 1100 87 19 186 0.7
16 NA 4.5 1100 90 20 186 0.7
17 NA 4.5 1100 87 19 186 0.7
18 NA 4.5 1100 89 20 186 0.7
19 NA 4.5 1100 86 20 186 0.7
20 NA 4.5 1100 89 20 186 0.7
21 NA 4.5 1100 89 21 186 0.7
22 NA 4.5 1100 88 23 186 0.7
23 NA 4.5 1100 87 20 186 0.7
24 NA 4.5 1100 91 20 186 0.7
25 NA 4.5 1100 90 19 186 0.7
26 NA 4.5 1100 88 21 186 0.7
27 NA 4.5 1100 89 20 186 0.7
28 NA 4.5 1100 86 20 186 0.7
29 NA 4.5 1100 84 20 186 0.7
30 NA 4.5 1100 89 21 186 0.7
WgtGroundRope TowDir GroundSpeed SpeedWater SurCurDir SurCurSpeed BotCurDir
1 NA 90 3.9 4.0 260 0.1 NA
2 NA 230 3.8 3.9 280 0.1 NA
3 NA 56 3.9 4.0 200 0.1 NA
4 NA 208 4.0 4.0 204 0.0 NA
5 NA 165 4.4 4.3 350 0.1 NA
6 NA 27 4.2 4.2 150 0.1 NA
7 NA 70 4.0 4.1 201 0.2 NA
8 NA 325 3.7 3.7 170 0.2 NA
9 NA 107 4.1 4.1 153 0.1 NA
10 NA 213 4.1 4.2 241 0.1 NA
11 NA 148 3.9 4.1 200 0.2 NA
12 NA 260 4.1 4.2 190 0.1 NA
13 NA 21 4.1 4.2 16 0.2 NA
14 NA 20 3.9 4.0 95 0.3 NA
15 NA 180 4.0 4.0 121 0.1 NA
16 NA 334 3.7 3.8 90 0.1 NA
17 NA 314 3.9 4.0 198 0.1 NA
18 NA 260 4.1 4.1 161 0.2 NA
19 NA 47 4.3 4.3 9 0.2 NA
20 NA 60 3.8 3.8 45 0.2 NA
21 NA 222 4.0 4.0 49 0.1 NA
22 NA 50 4.2 4.2 350 0.2 NA
23 NA 165 4.1 4.1 194 0.2 NA
24 NA 49 4.0 4.0 59 0.1 NA
25 NA 250 4.1 4.1 198 0.2 NA
26 NA 30 4.3 4.3 59 0.2 NA
27 NA 235 4.1 4.2 280 0.1 NA
28 NA 25 3.8 3.9 130 0.1 NA
29 NA 210 3.7 3.8 71 0.1 NA
30 NA 60 4.2 4.3 330 0.2 NA
BotCurSpeed WindDir WindSpeed SwellDir SwellHeight SurTemp BotTemp SurSal
1 -9 240 6 240 1.0 -9 -9 -9
2 -9 240 4 240 1.0 -9 -9 -9
3 -9 340 8 340 1.0 -9 -9 -9
4 -9 340 8 340 1.0 -9 -9 -9
5 -9 240 3 240 1.0 -9 -9 -9
6 -9 240 6 240 1.0 -9 -9 -9
7 -9 220 4 220 2.0 -9 -9 -9
8 -9 270 18 270 2.5 -9 -9 -9
9 -9 220 5 220 2.0 -9 -9 -9
10 -9 180 4 240 2.0 -9 -9 -9
11 -9 180 6 200 2.0 -9 -9 -9
12 -9 180 5 200 2.0 -9 -9 -9
13 -9 270 15 270 2.0 -9 -9 -9
14 -9 270 14 270 2.5 -9 -9 -9
15 -9 30 11 360 2.0 -9 -9 -9
16 -9 270 18 270 2.5 -9 -9 -9
17 -9 20 13 360 2.0 -9 -9 -9
18 -9 2 10 360 2.0 -9 -9 -9
19 -9 220 14 220 2.0 -9 -9 -9
20 -9 340 8 340 1.5 -9 -9 -9
21 -9 340 5 340 1.5 -9 -9 -9
22 -9 180 16 180 2.0 -9 -9 -9
23 -9 30 8 360 1.0 -9 -9 -9
24 -9 250 10 250 2.0 -9 -9 -9
25 -9 340 8 340 1.0 -9 -9 -9
26 -9 220 13 220 1.5 -9 -9 -9
27 -9 340 9 340 1.5 -9 -9 -9
28 -9 240 9 240 1.0 -9 -9 -9
29 -9 220 13 220 1.5 -9 -9 -9
30 -9 220 14 220 2.0 -9 -9 -9
BotSal ThermoCline ThClineDepth DateofCalculation CatchWgt Valid_Aphia
1 -9 NA NA 20160219 157600 126437
2 -9 NA NA 20160219 227800 126437
3 -9 NA NA 20160219 374200 126437
4 -9 NA NA 20160219 399800 126437
5 -9 NA NA 20160219 94200 126437
6 -9 NA NA 20160219 374600 126437
7 -9 NA NA 20160219 358200 126437
8 -9 NA NA 20160219 406200 126437
9 -9 NA NA 20160219 357000 126437
10 -9 NA NA 20160219 0 126437
11 -9 NA NA 20160219 432200 126437
12 -9 NA NA 20160219 274000 126437
13 -9 NA NA 20160219 214200 126437
14 -9 NA NA 20160219 312000 126437
15 -9 NA NA 20160219 486600 126437
16 -9 NA NA 20160219 213600 126437
17 -9 NA NA 20160219 198200 126437
18 -9 NA NA 20160219 238800 126437
19 -9 NA NA 20160219 403800 126437
20 -9 NA NA 20160219 304200 126437
21 -9 NA NA 20160219 529714 126437
22 -9 NA NA 20160219 271400 126437
23 -9 NA NA 20160219 374200 126437
24 -9 NA NA 20160219 378000 126437
25 -9 NA NA 20160219 599000 126437
26 -9 NA NA 20160219 509400 126437
27 -9 NA NA 20160219 548800 126437
28 -9 NA NA 20160219 372000 126437
29 -9 NA NA 20160219 508400 126437
30 -9 NA NA 20160219 676800 126437
>
> # look up specific species
> aphia <- icesVocab::findAphia(c("cod", "haddock"))
Error in loadNamespace(name) : there is no package called ‘icesVocab’
Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2-0
Check: examples
Result: ERROR
Running examples in ‘icesDatras-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getCatchWgt
> ### Title: Get Catch Weights
> ### Aliases: getCatchWgt
>
> ### ** Examples
>
> getCatchWgt(survey = "ROCKALL", years = 2002, quarters = 3, aphia = 126437)
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Extracting total catch weight by species and haul for 1 species
RecordType Survey Quarter Country Ship Gear SweepLngt GearExp DoorType StNo
1 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 438
2 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 437
3 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 435
4 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 434
5 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 436
6 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 439
7 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 425
8 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 450
9 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 424
10 HH ROCKALL 3 SCO SCO3 GOV NA NA <NA> 423
11 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 422
12 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 421
13 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 447
14 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 448
15 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 428
16 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 449
17 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 427
18 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 426
19 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 444
20 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 430
21 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 431
22 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 445
23 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 429
24 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 446
25 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 433
26 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 442
27 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 432
28 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 440
29 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 441
30 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 443
HaulNo Year Month Day TimeShot Stratum HaulDur DayNight ShootLat ShootLong
1 18 2002 9 4 822 NA 30 D 56.9500 -13.7667
2 17 2002 9 4 656 NA 30 D 57.0167 -13.7833
3 15 2002 9 3 1955 NA 30 N 57.0333 -14.2167
4 14 2002 9 3 1822 NA 30 D 57.1000 -14.3000
5 16 2002 9 4 514 NA 30 D 57.1000 -13.9833
6 19 2002 9 4 1009 NA 30 D 57.1167 -13.5500
7 5 2002 9 2 1948 NA 30 N 57.7000 -13.7333
8 30 2002 9 5 1214 NA 30 D 57.7167 -13.3833
9 4 2002 9 2 1826 NA 30 D 57.7833 -13.8667
10 3 2002 9 2 1335 NA 30 D 57.8000 -13.7667
11 2 2002 9 2 1153 NA 30 D 57.8500 -13.6333
12 1 2002 9 2 1003 NA 30 D 57.9000 -13.6167
13 27 2002 9 5 752 NA 30 D 57.4333 -13.5667
14 28 2002 9 5 908 NA 30 D 57.5000 -13.4333
15 8 2002 9 3 849 NA 30 D 57.5667 -14.0000
16 29 2002 9 5 1036 NA 30 D 57.5667 -13.4333
17 7 2002 9 3 723 NA 30 D 57.6000 -14.0667
18 6 2002 9 3 546 NA 30 D 57.6667 -14.0167
19 24 2002 9 4 1748 NA 30 D 57.3333 -13.7167
20 10 2002 9 3 1150 NA 30 D 57.3500 -14.1833
21 11 2002 9 3 1307 NA 28 D 57.3500 -14.1167
22 25 2002 9 4 1909 NA 30 N 57.3667 -13.5500
23 9 2002 9 3 1040 NA 30 D 57.4167 -14.2333
24 26 2002 9 5 622 NA 30 D 57.4333 -13.7667
25 13 2002 9 3 1702 NA 30 D 57.1667 -14.1000
26 22 2002 9 4 1506 NA 30 D 57.2167 -13.9167
27 12 2002 9 3 1514 NA 30 D 57.2333 -14.1500
28 20 2002 9 4 1201 NA 30 D 57.2333 -13.6000
29 21 2002 9 4 1318 NA 30 D 57.2667 -13.6500
30 23 2002 9 4 1628 NA 30 D 57.3248 -13.9185
HaulLat HaulLong StatRec Depth HaulVal HydroStNo StdSpecRecCode
1 56.9500 -13.7167 42D6 183 V NA 1
2 57.0167 -13.8333 43D6 183 V NA 1
3 57.0500 -14.1500 43D5 174 V NA 1
4 57.0667 -14.3333 43D5 175 V NA 1
5 57.1000 -13.9167 43D6 175 V NA 1
6 57.1333 -13.5167 43D6 197 V NA 1
7 57.7000 -13.6667 44D6 142 V NA 1
8 57.7333 -13.4000 44D6 158 V NA 1
9 57.7667 -13.8167 44D6 154 V NA 1
10 57.7667 -13.8000 44D6 158 I NA 1
11 57.8333 -13.5833 44D6 160 V NA 1
12 57.9000 -13.6833 44D6 190 V NA 1
13 57.4667 -13.5333 43D6 160 V NA 1
14 57.5167 -13.4000 44D6 170 V NA 1
15 57.5333 -14.0000 44D5 160 V NA 1
16 57.6000 -13.4667 44D6 160 V NA 1
17 57.6333 -14.1167 44D5 165 V NA 1
18 57.6667 -14.0833 44D5 158 V NA 1
19 57.3500 -13.6667 43D6 156 V NA 1
20 57.3667 -14.1333 43D5 180 V NA 1
21 57.3167 -14.1500 43D5 164 V NA 1
22 57.3667 -13.4833 43D6 172 V NA 1
23 57.3833 -14.2167 43D5 170 V NA 1
24 57.4500 -13.7167 43D6 150 V NA 1
25 57.1500 -14.1667 43D5 165 V NA 1
26 57.2500 -13.8833 43D6 164 V NA 1
27 57.2000 -14.2000 43D5 168 V NA 1
28 57.2500 -13.5833 43D6 184 V NA 1
29 57.2500 -13.6833 43D6 174 V NA 1
30 57.3453 -13.8640 43D6 155 V NA 1
BycSpecRecCode DataType Netopening Rigging Tickler Distance Warplngt Warpdia
1 1 C 4.4 NA NA 3666 560 28
2 1 C 4.2 NA NA 3654 600 28
3 1 C 4.5 NA NA 3658 520 28
4 1 C 4.3 NA NA 3670 520 28
5 1 C 4.2 NA NA 3932 560 28
6 1 C 4.2 NA NA 3869 600 28
7 1 C 4.5 NA NA 3787 480 28
8 1 C -9.0 NA NA 3432 470 28
9 1 C 4.7 NA NA 3817 480 28
10 1 C -9.0 NA NA NA NA NA
11 1 C 4.4 NA NA 3768 480 28
12 1 C 4.4 NA NA 3960 570 28
13 1 C 4.4 NA NA 3888 480 28
14 1 C 4.7 NA NA 3617 500 28
15 1 C 4.6 NA NA 3755 480 28
16 1 C -9.0 NA NA 3454 450 28
17 1 C 4.7 NA NA 3653 480 28
18 1 C 4.7 NA NA 3733 460 28
19 1 C 4.4 NA NA 3978 500 28
20 1 C 4.3 NA NA 3498 570 28
21 1 C 4.3 NA NA 3426 560 28
22 1 C 4.3 NA NA 3890 570 28
23 1 C 4.5 NA NA 3818 500 28
24 1 C 4.3 NA NA 3708 450 28
25 1 C 4.3 NA NA 3808 480 28
26 1 C 4.3 NA NA 3952 560 28
27 1 C 4.2 NA NA 3819 560 28
28 1 C 4.2 NA NA 3572 600 28
29 1 C 4.3 NA NA 3517 530 28
30 1 C 4.3 NA NA 3984 500 28
WarpDen DoorSurface DoorWgt DoorSpread WingSpread Buoyancy KiteDim
1 NA 4.5 1100 84 19 186 0.7
2 NA 4.5 1100 86 20 186 0.7
3 NA 4.5 1100 86 19 186 0.7
4 NA 4.5 1100 90 19 186 0.7
5 NA 4.5 1100 86 22 186 0.7
6 NA 4.5 1100 87 20 186 0.7
7 NA 4.5 1100 88 -9 186 0.7
8 NA 4.5 1100 98 22 186 0.7
9 NA 4.5 1100 93 24 186 0.7
10 NA -9.0 NA -9 20 NA -9.0
11 NA 4.5 1100 88 20 186 0.7
12 NA 4.5 1100 91 21 186 0.7
13 NA 4.5 1100 90 20 186 0.7
14 NA 4.5 1100 88 20 186 0.7
15 NA 4.5 1100 87 19 186 0.7
16 NA 4.5 1100 90 20 186 0.7
17 NA 4.5 1100 87 19 186 0.7
18 NA 4.5 1100 89 20 186 0.7
19 NA 4.5 1100 86 20 186 0.7
20 NA 4.5 1100 89 20 186 0.7
21 NA 4.5 1100 89 21 186 0.7
22 NA 4.5 1100 88 23 186 0.7
23 NA 4.5 1100 87 20 186 0.7
24 NA 4.5 1100 91 20 186 0.7
25 NA 4.5 1100 90 19 186 0.7
26 NA 4.5 1100 88 21 186 0.7
27 NA 4.5 1100 89 20 186 0.7
28 NA 4.5 1100 86 20 186 0.7
29 NA 4.5 1100 84 20 186 0.7
30 NA 4.5 1100 89 21 186 0.7
WgtGroundRope TowDir GroundSpeed SpeedWater SurCurDir SurCurSpeed BotCurDir
1 NA 90 3.9 4.0 260 0.1 NA
2 NA 230 3.8 3.9 280 0.1 NA
3 NA 56 3.9 4.0 200 0.1 NA
4 NA 208 4.0 4.0 204 0.0 NA
5 NA 165 4.4 4.3 350 0.1 NA
6 NA 27 4.2 4.2 150 0.1 NA
7 NA 70 4.0 4.1 201 0.2 NA
8 NA 325 3.7 3.7 170 0.2 NA
9 NA 107 4.1 4.1 153 0.1 NA
10 NA 213 4.1 4.2 241 0.1 NA
11 NA 148 3.9 4.1 200 0.2 NA
12 NA 260 4.1 4.2 190 0.1 NA
13 NA 21 4.1 4.2 16 0.2 NA
14 NA 20 3.9 4.0 95 0.3 NA
15 NA 180 4.0 4.0 121 0.1 NA
16 NA 334 3.7 3.8 90 0.1 NA
17 NA 314 3.9 4.0 198 0.1 NA
18 NA 260 4.1 4.1 161 0.2 NA
19 NA 47 4.3 4.3 9 0.2 NA
20 NA 60 3.8 3.8 45 0.2 NA
21 NA 222 4.0 4.0 49 0.1 NA
22 NA 50 4.2 4.2 350 0.2 NA
23 NA 165 4.1 4.1 194 0.2 NA
24 NA 49 4.0 4.0 59 0.1 NA
25 NA 250 4.1 4.1 198 0.2 NA
26 NA 30 4.3 4.3 59 0.2 NA
27 NA 235 4.1 4.2 280 0.1 NA
28 NA 25 3.8 3.9 130 0.1 NA
29 NA 210 3.7 3.8 71 0.1 NA
30 NA 60 4.2 4.3 330 0.2 NA
BotCurSpeed WindDir WindSpeed SwellDir SwellHeight SurTemp BotTemp SurSal
1 -9 240 6 240 1.0 -9 -9 -9
2 -9 240 4 240 1.0 -9 -9 -9
3 -9 340 8 340 1.0 -9 -9 -9
4 -9 340 8 340 1.0 -9 -9 -9
5 -9 240 3 240 1.0 -9 -9 -9
6 -9 240 6 240 1.0 -9 -9 -9
7 -9 220 4 220 2.0 -9 -9 -9
8 -9 270 18 270 2.5 -9 -9 -9
9 -9 220 5 220 2.0 -9 -9 -9
10 -9 180 4 240 2.0 -9 -9 -9
11 -9 180 6 200 2.0 -9 -9 -9
12 -9 180 5 200 2.0 -9 -9 -9
13 -9 270 15 270 2.0 -9 -9 -9
14 -9 270 14 270 2.5 -9 -9 -9
15 -9 30 11 360 2.0 -9 -9 -9
16 -9 270 18 270 2.5 -9 -9 -9
17 -9 20 13 360 2.0 -9 -9 -9
18 -9 2 10 360 2.0 -9 -9 -9
19 -9 220 14 220 2.0 -9 -9 -9
20 -9 340 8 340 1.5 -9 -9 -9
21 -9 340 5 340 1.5 -9 -9 -9
22 -9 180 16 180 2.0 -9 -9 -9
23 -9 30 8 360 1.0 -9 -9 -9
24 -9 250 10 250 2.0 -9 -9 -9
25 -9 340 8 340 1.0 -9 -9 -9
26 -9 220 13 220 1.5 -9 -9 -9
27 -9 340 9 340 1.5 -9 -9 -9
28 -9 240 9 240 1.0 -9 -9 -9
29 -9 220 13 220 1.5 -9 -9 -9
30 -9 220 14 220 2.0 -9 -9 -9
BotSal ThermoCline ThClineDepth DateofCalculation CatchWgt Valid_Aphia
1 -9 NA NA 20160219 157600 126437
2 -9 NA NA 20160219 227800 126437
3 -9 NA NA 20160219 374200 126437
4 -9 NA NA 20160219 399800 126437
5 -9 NA NA 20160219 94200 126437
6 -9 NA NA 20160219 374600 126437
7 -9 NA NA 20160219 358200 126437
8 -9 NA NA 20160219 406200 126437
9 -9 NA NA 20160219 357000 126437
10 -9 NA NA 20160219 0 126437
11 -9 NA NA 20160219 432200 126437
12 -9 NA NA 20160219 274000 126437
13 -9 NA NA 20160219 214200 126437
14 -9 NA NA 20160219 312000 126437
15 -9 NA NA 20160219 486600 126437
16 -9 NA NA 20160219 213600 126437
17 -9 NA NA 20160219 198200 126437
18 -9 NA NA 20160219 238800 126437
19 -9 NA NA 20160219 403800 126437
20 -9 NA NA 20160219 304200 126437
21 -9 NA NA 20160219 529714 126437
22 -9 NA NA 20160219 271400 126437
23 -9 NA NA 20160219 374200 126437
24 -9 NA NA 20160219 378000 126437
25 -9 NA NA 20160219 599000 126437
26 -9 NA NA 20160219 509400 126437
27 -9 NA NA 20160219 548800 126437
28 -9 NA NA 20160219 372000 126437
29 -9 NA NA 20160219 508400 126437
30 -9 NA NA 20160219 676800 126437
>
> # look up specific species
> aphia <- icesVocab::findAphia(c("cod", "haddock"))
Error in loadNamespace(name) : there is no package called ‘icesVocab’
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.2-0
Check: examples
Result: ERROR
Running examples in ‘icesDatras-Ex.R’ failed
The error most likely occurred in:
> ### Name: getCatchWgt
> ### Title: Get Catch Weights
> ### Aliases: getCatchWgt
>
> ### ** Examples
>
> getCatchWgt(survey = "ROCKALL", years = 2002, quarters = 3, aphia = 126437)
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Data being extracted for:
survey year quarter
1 ROCKALL 2002 3
Extracting total catch weight by species and haul for 1 species
RecordType Survey Quarter Country Ship Gear SweepLngt GearExp DoorType StNo
1 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 438
2 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 437
3 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 435
4 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 434
5 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 436
6 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 439
7 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 425
8 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 450
9 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 424
10 HH ROCKALL 3 SCO SCO3 GOV NA NA <NA> 423
11 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 422
12 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 421
13 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 447
14 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 448
15 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 428
16 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 449
17 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 427
18 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 426
19 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 444
20 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 430
21 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 431
22 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 445
23 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 429
24 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 446
25 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 433
26 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 442
27 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 432
28 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 440
29 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 441
30 HH ROCKALL 3 SCO SCO3 GOV 60 NA P 443
HaulNo Year Month Day TimeShot Stratum HaulDur DayNight ShootLat ShootLong
1 18 2002 9 4 822 NA 30 D 56.9500 -13.7667
2 17 2002 9 4 656 NA 30 D 57.0167 -13.7833
3 15 2002 9 3 1955 NA 30 N 57.0333 -14.2167
4 14 2002 9 3 1822 NA 30 D 57.1000 -14.3000
5 16 2002 9 4 514 NA 30 D 57.1000 -13.9833
6 19 2002 9 4 1009 NA 30 D 57.1167 -13.5500
7 5 2002 9 2 1948 NA 30 N 57.7000 -13.7333
8 30 2002 9 5 1214 NA 30 D 57.7167 -13.3833
9 4 2002 9 2 1826 NA 30 D 57.7833 -13.8667
10 3 2002 9 2 1335 NA 30 D 57.8000 -13.7667
11 2 2002 9 2 1153 NA 30 D 57.8500 -13.6333
12 1 2002 9 2 1003 NA 30 D 57.9000 -13.6167
13 27 2002 9 5 752 NA 30 D 57.4333 -13.5667
14 28 2002 9 5 908 NA 30 D 57.5000 -13.4333
15 8 2002 9 3 849 NA 30 D 57.5667 -14.0000
16 29 2002 9 5 1036 NA 30 D 57.5667 -13.4333
17 7 2002 9 3 723 NA 30 D 57.6000 -14.0667
18 6 2002 9 3 546 NA 30 D 57.6667 -14.0167
19 24 2002 9 4 1748 NA 30 D 57.3333 -13.7167
20 10 2002 9 3 1150 NA 30 D 57.3500 -14.1833
21 11 2002 9 3 1307 NA 28 D 57.3500 -14.1167
22 25 2002 9 4 1909 NA 30 N 57.3667 -13.5500
23 9 2002 9 3 1040 NA 30 D 57.4167 -14.2333
24 26 2002 9 5 622 NA 30 D 57.4333 -13.7667
25 13 2002 9 3 1702 NA 30 D 57.1667 -14.1000
26 22 2002 9 4 1506 NA 30 D 57.2167 -13.9167
27 12 2002 9 3 1514 NA 30 D 57.2333 -14.1500
28 20 2002 9 4 1201 NA 30 D 57.2333 -13.6000
29 21 2002 9 4 1318 NA 30 D 57.2667 -13.6500
30 23 2002 9 4 1628 NA 30 D 57.3248 -13.9185
HaulLat HaulLong StatRec Depth HaulVal HydroStNo StdSpecRecCode
1 56.9500 -13.7167 42D6 183 V NA 1
2 57.0167 -13.8333 43D6 183 V NA 1
3 57.0500 -14.1500 43D5 174 V NA 1
4 57.0667 -14.3333 43D5 175 V NA 1
5 57.1000 -13.9167 43D6 175 V NA 1
6 57.1333 -13.5167 43D6 197 V NA 1
7 57.7000 -13.6667 44D6 142 V NA 1
8 57.7333 -13.4000 44D6 158 V NA 1
9 57.7667 -13.8167 44D6 154 V NA 1
10 57.7667 -13.8000 44D6 158 I NA 1
11 57.8333 -13.5833 44D6 160 V NA 1
12 57.9000 -13.6833 44D6 190 V NA 1
13 57.4667 -13.5333 43D6 160 V NA 1
14 57.5167 -13.4000 44D6 170 V NA 1
15 57.5333 -14.0000 44D5 160 V NA 1
16 57.6000 -13.4667 44D6 160 V NA 1
17 57.6333 -14.1167 44D5 165 V NA 1
18 57.6667 -14.0833 44D5 158 V NA 1
19 57.3500 -13.6667 43D6 156 V NA 1
20 57.3667 -14.1333 43D5 180 V NA 1
21 57.3167 -14.1500 43D5 164 V NA 1
22 57.3667 -13.4833 43D6 172 V NA 1
23 57.3833 -14.2167 43D5 170 V NA 1
24 57.4500 -13.7167 43D6 150 V NA 1
25 57.1500 -14.1667 43D5 165 V NA 1
26 57.2500 -13.8833 43D6 164 V NA 1
27 57.2000 -14.2000 43D5 168 V NA 1
28 57.2500 -13.5833 43D6 184 V NA 1
29 57.2500 -13.6833 43D6 174 V NA 1
30 57.3453 -13.8640 43D6 155 V NA 1
BycSpecRecCode DataType Netopening Rigging Tickler Distance Warplngt Warpdia
1 1 C 4.4 NA NA 3666 560 28
2 1 C 4.2 NA NA 3654 600 28
3 1 C 4.5 NA NA 3658 520 28
4 1 C 4.3 NA NA 3670 520 28
5 1 C 4.2 NA NA 3932 560 28
6 1 C 4.2 NA NA 3869 600 28
7 1 C 4.5 NA NA 3787 480 28
8 1 C -9.0 NA NA 3432 470 28
9 1 C 4.7 NA NA 3817 480 28
10 1 C -9.0 NA NA NA NA NA
11 1 C 4.4 NA NA 3768 480 28
12 1 C 4.4 NA NA 3960 570 28
13 1 C 4.4 NA NA 3888 480 28
14 1 C 4.7 NA NA 3617 500 28
15 1 C 4.6 NA NA 3755 480 28
16 1 C -9.0 NA NA 3454 450 28
17 1 C 4.7 NA NA 3653 480 28
18 1 C 4.7 NA NA 3733 460 28
19 1 C 4.4 NA NA 3978 500 28
20 1 C 4.3 NA NA 3498 570 28
21 1 C 4.3 NA NA 3426 560 28
22 1 C 4.3 NA NA 3890 570 28
23 1 C 4.5 NA NA 3818 500 28
24 1 C 4.3 NA NA 3708 450 28
25 1 C 4.3 NA NA 3808 480 28
26 1 C 4.3 NA NA 3952 560 28
27 1 C 4.2 NA NA 3819 560 28
28 1 C 4.2 NA NA 3572 600 28
29 1 C 4.3 NA NA 3517 530 28
30 1 C 4.3 NA NA 3984 500 28
WarpDen DoorSurface DoorWgt DoorSpread WingSpread Buoyancy KiteDim
1 NA 4.5 1100 84 19 186 0.7
2 NA 4.5 1100 86 20 186 0.7
3 NA 4.5 1100 86 19 186 0.7
4 NA 4.5 1100 90 19 186 0.7
5 NA 4.5 1100 86 22 186 0.7
6 NA 4.5 1100 87 20 186 0.7
7 NA 4.5 1100 88 -9 186 0.7
8 NA 4.5 1100 98 22 186 0.7
9 NA 4.5 1100 93 24 186 0.7
10 NA -9.0 NA -9 20 NA -9.0
11 NA 4.5 1100 88 20 186 0.7
12 NA 4.5 1100 91 21 186 0.7
13 NA 4.5 1100 90 20 186 0.7
14 NA 4.5 1100 88 20 186 0.7
15 NA 4.5 1100 87 19 186 0.7
16 NA 4.5 1100 90 20 186 0.7
17 NA 4.5 1100 87 19 186 0.7
18 NA 4.5 1100 89 20 186 0.7
19 NA 4.5 1100 86 20 186 0.7
20 NA 4.5 1100 89 20 186 0.7
21 NA 4.5 1100 89 21 186 0.7
22 NA 4.5 1100 88 23 186 0.7
23 NA 4.5 1100 87 20 186 0.7
24 NA 4.5 1100 91 20 186 0.7
25 NA 4.5 1100 90 19 186 0.7
26 NA 4.5 1100 88 21 186 0.7
27 NA 4.5 1100 89 20 186 0.7
28 NA 4.5 1100 86 20 186 0.7
29 NA 4.5 1100 84 20 186 0.7
30 NA 4.5 1100 89 21 186 0.7
WgtGroundRope TowDir GroundSpeed SpeedWater SurCurDir SurCurSpeed BotCurDir
1 NA 90 3.9 4.0 260 0.1 NA
2 NA 230 3.8 3.9 280 0.1 NA
3 NA 56 3.9 4.0 200 0.1 NA
4 NA 208 4.0 4.0 204 0.0 NA
5 NA 165 4.4 4.3 350 0.1 NA
6 NA 27 4.2 4.2 150 0.1 NA
7 NA 70 4.0 4.1 201 0.2 NA
8 NA 325 3.7 3.7 170 0.2 NA
9 NA 107 4.1 4.1 153 0.1 NA
10 NA 213 4.1 4.2 241 0.1 NA
11 NA 148 3.9 4.1 200 0.2 NA
12 NA 260 4.1 4.2 190 0.1 NA
13 NA 21 4.1 4.2 16 0.2 NA
14 NA 20 3.9 4.0 95 0.3 NA
15 NA 180 4.0 4.0 121 0.1 NA
16 NA 334 3.7 3.8 90 0.1 NA
17 NA 314 3.9 4.0 198 0.1 NA
18 NA 260 4.1 4.1 161 0.2 NA
19 NA 47 4.3 4.3 9 0.2 NA
20 NA 60 3.8 3.8 45 0.2 NA
21 NA 222 4.0 4.0 49 0.1 NA
22 NA 50 4.2 4.2 350 0.2 NA
23 NA 165 4.1 4.1 194 0.2 NA
24 NA 49 4.0 4.0 59 0.1 NA
25 NA 250 4.1 4.1 198 0.2 NA
26 NA 30 4.3 4.3 59 0.2 NA
27 NA 235 4.1 4.2 280 0.1 NA
28 NA 25 3.8 3.9 130 0.1 NA
29 NA 210 3.7 3.8 71 0.1 NA
30 NA 60 4.2 4.3 330 0.2 NA
BotCurSpeed WindDir WindSpeed SwellDir SwellHeight SurTemp BotTemp SurSal
1 -9 240 6 240 1.0 -9 -9 -9
2 -9 240 4 240 1.0 -9 -9 -9
3 -9 340 8 340 1.0 -9 -9 -9
4 -9 340 8 340 1.0 -9 -9 -9
5 -9 240 3 240 1.0 -9 -9 -9
6 -9 240 6 240 1.0 -9 -9 -9
7 -9 220 4 220 2.0 -9 -9 -9
8 -9 270 18 270 2.5 -9 -9 -9
9 -9 220 5 220 2.0 -9 -9 -9
10 -9 180 4 240 2.0 -9 -9 -9
11 -9 180 6 200 2.0 -9 -9 -9
12 -9 180 5 200 2.0 -9 -9 -9
13 -9 270 15 270 2.0 -9 -9 -9
14 -9 270 14 270 2.5 -9 -9 -9
15 -9 30 11 360 2.0 -9 -9 -9
16 -9 270 18 270 2.5 -9 -9 -9
17 -9 20 13 360 2.0 -9 -9 -9
18 -9 2 10 360 2.0 -9 -9 -9
19 -9 220 14 220 2.0 -9 -9 -9
20 -9 340 8 340 1.5 -9 -9 -9
21 -9 340 5 340 1.5 -9 -9 -9
22 -9 180 16 180 2.0 -9 -9 -9
23 -9 30 8 360 1.0 -9 -9 -9
24 -9 250 10 250 2.0 -9 -9 -9
25 -9 340 8 340 1.0 -9 -9 -9
26 -9 220 13 220 1.5 -9 -9 -9
27 -9 340 9 340 1.5 -9 -9 -9
28 -9 240 9 240 1.0 -9 -9 -9
29 -9 220 13 220 1.5 -9 -9 -9
30 -9 220 14 220 2.0 -9 -9 -9
BotSal ThermoCline ThClineDepth DateofCalculation CatchWgt Valid_Aphia
1 -9 NA NA 20160219 157600 126437
2 -9 NA NA 20160219 227800 126437
3 -9 NA NA 20160219 374200 126437
4 -9 NA NA 20160219 399800 126437
5 -9 NA NA 20160219 94200 126437
6 -9 NA NA 20160219 374600 126437
7 -9 NA NA 20160219 358200 126437
8 -9 NA NA 20160219 406200 126437
9 -9 NA NA 20160219 357000 126437
10 -9 NA NA 20160219 0 126437
11 -9 NA NA 20160219 432200 126437
12 -9 NA NA 20160219 274000 126437
13 -9 NA NA 20160219 214200 126437
14 -9 NA NA 20160219 312000 126437
15 -9 NA NA 20160219 486600 126437
16 -9 NA NA 20160219 213600 126437
17 -9 NA NA 20160219 198200 126437
18 -9 NA NA 20160219 238800 126437
19 -9 NA NA 20160219 403800 126437
20 -9 NA NA 20160219 304200 126437
21 -9 NA NA 20160219 529714 126437
22 -9 NA NA 20160219 271400 126437
23 -9 NA NA 20160219 374200 126437
24 -9 NA NA 20160219 378000 126437
25 -9 NA NA 20160219 599000 126437
26 -9 NA NA 20160219 509400 126437
27 -9 NA NA 20160219 548800 126437
28 -9 NA NA 20160219 372000 126437
29 -9 NA NA 20160219 508400 126437
30 -9 NA NA 20160219 676800 126437
>
> # look up specific species
> aphia <- icesVocab::findAphia(c("cod", "haddock"))
Error in loadNamespace(name) : there is no package called ‘icesVocab’
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Flavor: r-patched-solaris-x86