CRAN Package Check Results for Package empirical

Last updated on 2019-03-12 12:50:04 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 2.48 28.10 30.58 WARN
r-devel-linux-x86_64-debian-gcc 0.2.0 2.15 21.42 23.57 WARN
r-devel-linux-x86_64-fedora-clang 0.2.0 36.58 WARN
r-devel-linux-x86_64-fedora-gcc 0.2.0 34.45 WARN
r-devel-windows-ix86+x86_64 0.2.0 7.00 51.00 58.00 WARN
r-patched-linux-x86_64 0.2.0 1.73 25.26 26.99 WARN
r-patched-solaris-x86 0.2.0 49.10 WARN
r-release-linux-x86_64 0.2.0 1.70 25.47 27.17 WARN
r-release-windows-ix86+x86_64 0.2.0 3.00 59.00 62.00 WARN
r-release-osx-x86_64 0.2.0 OK
r-oldrel-windows-ix86+x86_64 0.2.0 3.00 33.00 36.00 WARN
r-oldrel-osx-x86_64 0.2.0 OK

Check Details

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'empirical.Rnw' using Sweave
    
    Error: processing vignette 'empirical.Rnw' failed with diagnostics:
     chunk 8
    Error in x[seq_len(n)] : object of type 'closure' is not subsettable
    
    --- failed re-building 'empirical.Rnw'
    
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    make empirical.pdf
    make[2]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    pdflatex empirical.tex
    This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex)
     restricted \write18 enabled.
    entering extended mode
    (./empirical.tex
    LaTeX2e <2018-12-01>
    (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
    (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
    (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty
    (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))
    (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
    For additional information on amsmath, use the `?' option.
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
    (/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex/Sweave
    .sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
    (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v3.2a <2019/01/15> (tvz))
    (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
    (/usr/share/texlive/texmf-dist/tex/latex/ae/ae.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file empirical.aux.
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: pdftex
    (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
    [Loading MPS to PDF converter (version 2006.09.02).]
    ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
    (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty))
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
    Overfull \hbox (12.80406pt too wide) in paragraph at lines 37--37
     []$
    
    (/home/hornik/tmp/R.check/r-devel-clang/Work/build/share/texmf/tex/latex/ts1aer
    .fd) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aett.fd) [2])
    Runaway argument?
    ! File ended while scanning use of \FancyVerbGetLine.
    <inserted text>
     \par
    <*> empirical.tex
    
    ?
    ! Emergency stop.
    <inserted text>
     \par
    <*> empirical.tex
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Transcript written on empirical.log.
    make[2]: *** [Makefile:6: empirical.pdf] Error 1
    make[2]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    make[1]: *** [Makefile:2: default] Error 2
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    Error in tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/empirical.Rcheck/vign_test/empirical", :
     running 'make' failed
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘empirical.Rnw’ using Sweave
    
    Error: processing vignette 'empirical.Rnw' failed with diagnostics:
     chunk 8
    Error in x[seq_len(n)] : object of type ‘closure’ is not subsettable
    
    --- failed re-building ‘empirical.Rnw’
    
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    make empirical.pdf
    make[2]: Entering directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    pdflatex empirical.tex
    This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex)
     restricted \write18 enabled.
    entering extended mode
    (./empirical.tex
    LaTeX2e <2018-12-01>
    (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
    (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
    (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty
    (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))
    (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
    For additional information on amsmath, use the `?' option.
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
    (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex/Sweave.s
    ty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
    (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v3.2a <2019/01/15> (tvz))
    (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu)))
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def))
    (/usr/share/texlive/texmf-dist/tex/latex/ae/ae.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file empirical.aux.
    (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: pdftex
    (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
    [Loading MPS to PDF converter (version 2006.09.02).]
    ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
    (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty))
    (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty)
    (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
    (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)
    Overfull \hbox (12.80406pt too wide) in paragraph at lines 37--37
     []$
    
    (/home/hornik/tmp/R.check/r-devel-gcc/Work/build/share/texmf/tex/latex/ts1aer.f
    d) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
    (/usr/share/texlive/texmf-dist/tex/latex/ae/t1aett.fd) [2])
    Runaway argument?
    ! File ended while scanning use of \FancyVerbGetLine.
    <inserted text>
     \par
    <*> empirical.tex
    
    ?
    ! Emergency stop.
    <inserted text>
     \par
    <*> empirical.tex
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Transcript written on empirical.log.
    make[2]: *** [Makefile:6: empirical.pdf] Error 1
    make[2]: Leaving directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    make[1]: *** [Makefile:2: default] Error 2
    make[1]: Leaving directory '/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/empirical.Rcheck/vign_test/empirical/vignettes'
    Error in tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/empirical.Rcheck/vign_test/empirical", :
     running ‘make’ failed
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘empirical.Rnw’ using Sweave
    
    Error: processing vignette 'empirical.Rnw' failed with diagnostics:
     chunk 8
    Error in x[seq_len(n)] : object of type 'closure' is not subsettable
    
    --- failed re-building ‘empirical.Rnw’
    
    make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/empirical.Rcheck/vign_test/empirical/vignettes'
    make empirical.pdf
    make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/empirical.Rcheck/vign_test/empirical/vignettes'
    pdflatex empirical.tex
    This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdflatex)
     restricted \write18 enabled.
    entering extended mode
    (./empirical.tex
    LaTeX2e <2018-12-01>
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/size10.clo))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/parskip/parskip.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/oberdiek/kvoptions.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/etexcmds.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/etoolbox/etoolbox.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/tools/verbatim.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsmath.sty
    For additional information on amsmath, use the `?' option.
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amstext.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsgen.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsbsy.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsopn.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/amssymb.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/color.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics-cfg/color.cfg)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics-def/pdftex.def))
    (/data/gannet/ripley/R/R-clang/share/texmf/tex/latex/Sweave.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v3.2a <2019/01/15> (tvz))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ts1enc.def
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ts1enc.dfu)))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/t1enc.def))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/ae/ae.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file empirical.aux.
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: pdftex
    (/usr/local/texlive/2018/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
    [Loading MPS to PDF converter (version 2006.09.02).]
    ) (/usr/local/texlive/2018/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/oberdiek/grfext.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/umsa.fd)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/umsb.fd)
    Overfull \hbox (12.80406pt too wide) in paragraph at lines 37--37
     []$
    (/data/gannet/ripley/R/R-clang/share/texmf/tex/latex/ts1aer.fd) [1{/usr/local/t
    exlive/2018/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
    (/usr/local/texlive/2018/texmf-dist/tex/latex/ae/t1aett.fd) [2])
    Runaway argument?
    ! File ended while scanning use of \FancyVerbGetLine.
    <inserted text>
     \par
    <*> empirical.tex
    
    ?
    ! Emergency stop.
    <inserted text>
     \par
    <*> empirical.tex
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Transcript written on empirical.log.
    make[2]: *** [Makefile:6: empirical.pdf] Error 1
    make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/empirical.Rcheck/vign_test/empirical/vignettes'
    make[1]: *** [Makefile:2: default] Error 2
    make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/empirical.Rcheck/vign_test/empirical/vignettes'
    Error in tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/empirical.Rcheck/vign_test/empirical", :
     running 'make' failed
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘empirical.Rnw’ using Sweave
    
    Error: processing vignette 'empirical.Rnw' failed with diagnostics:
     chunk 8
    Error in x[seq_len(n)] : object of type 'closure' is not subsettable
    
    --- failed re-building ‘empirical.Rnw’
    
    make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/empirical.Rcheck/vign_test/empirical/vignettes'
    make empirical.pdf
    make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/empirical.Rcheck/vign_test/empirical/vignettes'
    pdflatex empirical.tex
    This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2018) (preloaded format=pdflatex)
     restricted \write18 enabled.
    entering extended mode
    (./empirical.tex
    LaTeX2e <2018-12-01>
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/article.cls
    Document Class: article 2018/09/03 v1.4i Standard LaTeX document class
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/size10.clo))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/geometry/geometry.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/keyval.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/parskip/parskip.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/oberdiek/kvoptions.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ltxcmds.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/infwarerr.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/etexcmds.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/etoolbox/etoolbox.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/tools/verbatim.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsmath.sty
    For additional information on amsmath, use the `?' option.
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amstext.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsgen.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsbsy.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsmath/amsopn.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/amssymb.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/color.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics-cfg/color.cfg)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics-def/pdftex.def))
    (/data/gannet/ripley/R/R-devel/share/texmf/tex/latex/Sweave.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ifthen.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/graphicx.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/graphics.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics/trig.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
    Style option: `fancyvrb' v3.2a <2019/01/15> (tvz))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/textcomp.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ts1enc.def
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ts1enc.dfu)))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/t1enc.def))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/ae/ae.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/fontenc.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/t1enc.def)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/ae/t1aer.fd))))
    No file empirical.aux.
    (/usr/local/texlive/2018/texmf-dist/tex/latex/base/ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: pdftex
    (/usr/local/texlive/2018/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
    [Loading MPS to PDF converter (version 2006.09.02).]
    ) (/usr/local/texlive/2018/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
    (/usr/local/texlive/2018/texmf-dist/tex/latex/oberdiek/grfext.sty
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/kvdefinekeys.sty))
    (/usr/local/texlive/2018/texmf-dist/tex/generic/oberdiek/pdftexcmds.sty)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/umsa.fd)
    (/usr/local/texlive/2018/texmf-dist/tex/latex/amsfonts/umsb.fd)
    Overfull \hbox (12.80406pt too wide) in paragraph at lines 37--37
     []$
    (/data/gannet/ripley/R/R-devel/share/texmf/tex/latex/ts1aer.fd) [1{/usr/local/t
    exlive/2018/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
    (/usr/local/texlive/2018/texmf-dist/tex/latex/ae/t1aett.fd) [2])
    Runaway argument?
    ! File ended while scanning use of \FancyVerbGetLine.
    <inserted text>
     \par
    <*> empirical.tex
    
    ?
    ! Emergency stop.
    <inserted text>
     \par
    <*> empirical.tex
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Transcript written on empirical.log.
    make[2]: *** [Makefile:6: empirical.pdf] Error 1
    make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/empirical.Rcheck/vign_test/empirical/vignettes'
    make[1]: *** [Makefile:2: default] Error 2
    make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/empirical.Rcheck/vign_test/empirical/vignettes'
    Error in tools:::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/empirical.Rcheck/vign_test/empirical", :
     running 'make' failed
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'empirical.Rnw' using Sweave
    
    Error: processing vignette 'empirical.Rnw' failed with diagnostics:
     chunk 8
    Error in x[seq_len(n)] : object of type 'closure' is not subsettable
    
    --- failed re-building 'empirical.Rnw'
    
    make[1]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/empirical.Rcheck/vign_test/empirical/vignettes'
    make empirical.pdf
    make[2]: Entering directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/empirical.Rcheck/vign_test/empirical/vignettes'
    pdflatex empirical.tex
    This is pdfTeX, Version 3.14159265-2.6-1.40.16 (MiKTeX 2.9)
    entering extended mode
    (empirical.tex
    LaTeX2e <2015/10/01> patch level 2
    Babel <3.9n> and hyphenation patterns for 69 languages loaded.
    (D:\Compiler\texmf\tex\latex\base\article.cls
    Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
    (D:\Compiler\texmf\tex\latex\base\size10.clo))
    (D:\Compiler\texmf\tex\latex\geometry\geometry.sty
    (D:\Compiler\texmf\tex\latex\graphics\keyval.sty)
    (D:\Compiler\texmf\tex\generic\oberdiek\ifpdf.sty)
    (D:\Compiler\texmf\tex\generic\oberdiek\ifvtex.sty)
    (D:\Compiler\texmf\tex\generic\ifxetex\ifxetex.sty)
    (D:\Compiler\texmf\tex\latex\geometry\geometry.cfg))
    (D:\Compiler\texmf\tex\latex\ltxmisc\parskip.sty)
    (D:\Compiler\texmf\tex\latex\tools\verbatim.sty)
    (C:\Users\CRAN\AppData\Roaming\MiKTeX\2.9\tex\latex\amsmath\amsmath.sty
    For additional information on amsmath, use the `?' option.
    (C:\Users\CRAN\AppData\Roaming\MiKTeX\2.9\tex\latex\amsmath\amstext.sty
    (C:\Users\CRAN\AppData\Roaming\MiKTeX\2.9\tex\latex\amsmath\amsgen.sty))
    (C:\Users\CRAN\AppData\Roaming\MiKTeX\2.9\tex\latex\amsmath\amsbsy.sty)
    (C:\Users\CRAN\AppData\Roaming\MiKTeX\2.9\tex\latex\amsmath\amsopn.sty))
    (D:\Compiler\texmf\tex\latex\amsfonts\amssymb.sty
    (D:\Compiler\texmf\tex\latex\amsfonts\amsfonts.sty))
    (D:\Compiler\texmf\tex\latex\graphics\color.sty
    (D:\Compiler\texmf\tex\latex\00miktex\color.cfg)
    (D:\Compiler\texmf\tex\latex\pdftex-def\pdftex.def
    (D:\Compiler\texmf\tex\generic\oberdiek\infwarerr.sty)
    (D:\Compiler\texmf\tex\generic\oberdiek\ltxcmds.sty)))
    (D:/RCompile/recent/R/share/texmf/tex/latex\Sweave.sty
    (D:\Compiler\texmf\tex\latex\base\ifthen.sty)
    (D:\Compiler\texmf\tex\latex\graphics\graphicx.sty
    (D:\Compiler\texmf\tex\latex\graphics\graphics.sty
    (D:\Compiler\texmf\tex\latex\graphics\trig.sty)
    (D:\Compiler\texmf\tex\latex\00miktex\graphics.cfg)))
    (D:\Compiler\texmf\tex\latex\fancyvrb\fancyvrb.sty
    Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
    <2008/02/07> (tvz)) (D:\Compiler\texmf\tex\latex\base\textcomp.sty
    (D:\Compiler\texmf\tex\latex\base\ts1enc.def))
    (D:\Compiler\texmf\tex\latex\base\fontenc.sty
    (D:\Compiler\texmf\tex\latex\base\t1enc.def))
    (D:\Compiler\texmf\tex\latex\ae\ae.sty
    (D:\Compiler\texmf\tex\latex\base\fontenc.sty
    (D:\Compiler\texmf\tex\latex\base\t1enc.def)
    (D:\Compiler\texmf\tex\latex\ae\t1aer.fd))))
    No file empirical.aux.
    (D:\Compiler\texmf\tex\latex\base\ts1cmr.fd)
    *geometry* driver: auto-detecting
    *geometry* detected driver: pdftex
    (C:\Users\CRAN\AppData\Roaming\MiKTeX\2.9\tex\context\base\supp-pdf.mkii
    [Loading MPS to PDF converter (version 2006.09.02).]
    ) (D:\Compiler\texmf\tex\generic\oberdiek\pdftexcmds.sty
    (D:\Compiler\texmf\tex\generic\oberdiek\ifluatex.sty))
    (D:\Compiler\texmf\tex\latex\oberdiek\epstopdf-base.sty
    (D:\Compiler\texmf\tex\latex\oberdiek\grfext.sty
    (D:\Compiler\texmf\tex\generic\oberdiek\kvdefinekeys.sty))
    (D:\Compiler\texmf\tex\latex\oberdiek\kvoptions.sty
    (D:\Compiler\texmf\tex\generic\oberdiek\kvsetkeys.sty
    (D:\Compiler\texmf\tex\generic\oberdiek\etexcmds.sty))))
    (D:\Compiler\texmf\tex\latex\amsfonts\umsa.fd)
    (D:\Compiler\texmf\tex\latex\amsfonts\umsb.fd)
    Overfull \hbox (12.80406pt too wide) in paragraph at lines 37--37
     []$
    (D:/RCompile/recent/R/share/texmf/tex/latex\ts1aer.fd) [1{C:/Users/CRAN/AppData
    /Local/MiKTeX/2.9/pdftex/config/pdftex.map}]
    (D:\Compiler\texmf\tex\latex\ae\t1aett.fd) [2])
    Runaway argument?
    ! File ended while scanning use of \FancyVerbGetLine.
    <inserted text>
     \par
    <*> ./empirical.tex
    
    ?
    ! Emergency stop.
    <inserted text>
     \par
    <*> ./empirical.tex
    
    ! ==> Fatal error occurred, no output PDF file produced!
    Transcript written on empirical.log.
    make[2]: *** [empirical.pdf] Error 1
    make[2]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/empirical.Rcheck/vign_test/empirical/vignettes'
    make[1]: *** [default] Error 2
    make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.6/empirical.Rcheck/vign_test/empirical/vignettes'
    Error in tools:::buildVignettes(dir = "d:/Rcompile/CRANpkg/local/3.6/empirical.Rcheck/vign_test/empirical", :
     running 'make' failed
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    
    Error: processing vignette ‘empirical.Rnw’ failed with diagnostics:
     chunk 8
    Error in x[seq_len(n)] : object of type ‘closure’ is not subsettable
    Execution halted
Flavors: r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64