CRAN Package Check Results for Package SMCP

Last updated on 2019-04-18 16:50:42 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.3 2.00 17.29 19.29 WARN
r-devel-linux-x86_64-debian-gcc 1.1.3 1.79 14.17 15.96 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.3 23.42 WARN
r-devel-linux-x86_64-fedora-gcc 1.1.3 22.40 NOTE
r-devel-windows-ix86+x86_64 1.1.3 7.00 34.00 41.00 NOTE
r-patched-linux-x86_64 1.1.3 1.83 17.28 19.11 NOTE
r-patched-solaris-x86 1.1.3 42.70 ERROR
r-release-linux-x86_64 1.1.3 1.36 16.20 17.56 NOTE
r-release-windows-ix86+x86_64 1.1.3 5.00 32.00 37.00 NOTE
r-release-osx-x86_64 1.1.3 WARN
r-oldrel-windows-ix86+x86_64 1.1.3 5.00 27.00 32.00 NOTE
r-oldrel-osx-x86_64 1.1.3 NOTE

Check Details

Version: 1.1.3
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     MCP_efficient.c:114:16: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
     MCP_efficient.c:134:16: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
     MCP_efficient.c:154:16: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64

Version: 1.1.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.3
Check: R code for possible problems
Result: NOTE
    SMCP : fun: no visible global function definition for 'cor'
    manipulate : fun: no visible global function definition for 'sd'
    sp: no visible binding for global variable 'sd'
    Undefined global functions or variables:
     cor sd
    Consider adding
     importFrom("stats", "cor", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1.3
Check: compiled code
Result: NOTE
    File ‘SMCP/libs/SMCP.so’:
     Found no call to: ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.3
Check: examples
Result: ERROR
    Running examples in ‘SMCP-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: SMCP
    > ### Title: Smoothed minimax concave penalization (SMCP) method for
    > ### genome-wide association studies.
    > ### Aliases: SMCP sp
    > ### Keywords: model fitting
    >
    > ### ** Examples
    >
    > x=matrix(rnorm(100*20),100,20)
    > y=rnorm(100)
    > fit=SMCP(x,y,0.3,0.3,3)
    > #solution path for this data
    > s.p=sp(x,y,0.3,10,0.05,3)
    Error in SMCP(x, y, alpha, delta * i, gamma) :
     NA/NaN/Inf in foreign function call (arg 6)
    Calls: sp -> SMCP
    Execution halted
Flavor: r-patched-solaris-x86