CRAN Package Check Results for Package aLFQ

Last updated on 2019-04-22 07:46:32 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.4 14.57 134.12 148.69 ERROR
r-devel-linux-x86_64-debian-gcc 1.3.4 12.85 111.98 124.83 ERROR
r-devel-linux-x86_64-fedora-clang 1.3.4 163.13 ERROR
r-devel-linux-x86_64-fedora-gcc 1.3.4 162.09 ERROR
r-devel-windows-ix86+x86_64 1.3.4 41.00 178.00 219.00 ERROR
r-patched-linux-x86_64 1.3.4 14.71 132.14 146.85 ERROR
r-patched-solaris-x86 1.3.4 255.10 ERROR
r-release-linux-x86_64 1.3.4 10.14 124.31 134.45 OK
r-release-windows-ix86+x86_64 1.3.4 18.00 195.00 213.00 OK
r-release-osx-x86_64 1.3.4 OK
r-oldrel-windows-ix86+x86_64 1.3.4 14.00 193.00 207.00 OK
r-oldrel-osx-x86_64 1.3.4 OK

Check Details

Version: 1.3.4
Check: tests
Result: ERROR
     Running 'testthat.R' [20s/13s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_check("aLFQ")
     -- 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.008767804
     Component "mfe": Mean relative difference: 0.01016523
    
     -- 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1177339
     Component "mfe": Mean relative difference: 0.02141255
    
     -- 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1907404
     Component "mfe": Mean relative difference: 0.1210566
    
     -- 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     -- 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     -- 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     -- 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     -- 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 54.8)
     [1] 1.890 - 1.535 == 0.355
     [2] 68.017 - 145.936 == -77.919
     [3] 3.413 - 5.643 == -2.229
     [4] 319.335 - 435.817 == -116.482
     [5] 195.991 - 295.300 == -99.309
     [6] 0.903 - 0.684 == 0.219
     [7] 518.271 - 178.206 == 340.065
     [8] 0.577 - 0.419 == 0.158
     [9] 36.472 - 39.140 == -2.668
     ...
    
     -- 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     -- 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     -- 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     -- 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     -- 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 31.2)
     [1] 1.608 - 1.382 == 0.226
     [2] 58.770 - 126.565 == -67.795
     [3] 5.225 - 5.028 == 0.197
     [4] 287.076 - 374.544 == -87.468
     [5] 200.839 - 254.605 == -53.766
     [6] 0.766 - 0.620 == 0.146
     [7] 451.707 - 611.235 == -159.528
     [8] 0.489 - 0.382 == 0.107
     [9] 31.430 - 34.318 == -2.888
     ...
    
     -- 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.260616
    
     -- 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.3261007
    
     -- 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     348/471 mismatches (average diff: 3192816)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     -- 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     352/475 mismatches (average diff: 3412242)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     -- 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     216/478 mismatches (average diff: 1530280)
     [5] 6732569 - 6991767 == -259198
     [7] 7113182 - 13113549 == -6000367
     [8] 891715 - 913342 == -21627
     [9] 1073336 - 1189364 == -116028
     [10] 6727435 - 11974505 == -5247070
     [13] 85455 - 106052 == -20597
     [14] 84111 - 104508 == -20397
     [15] 41091 - 80094 == -39003
     [16] 558927 - 568834 == -9907
     ...
    
     == testthat results ===========================================================
     OK: 71 SKIPPED: 0 FAILED: 18
     1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
     2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
     3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
     4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
     5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
     6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
     7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
     8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
     9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.3.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [24s/27s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_check("aLFQ")
     ── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.008767804
     Component "mfe": Mean relative difference: 0.01016523
    
     ── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1177339
     Component "mfe": Mean relative difference: 0.02141255
    
     ── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1907404
     Component "mfe": Mean relative difference: 0.1210566
    
     ── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 54.8)
     [1] 1.890 - 1.535 == 0.355
     [2] 68.017 - 145.936 == -77.919
     [3] 3.413 - 5.643 == -2.229
     [4] 319.335 - 435.817 == -116.482
     [5] 195.991 - 295.300 == -99.309
     [6] 0.903 - 0.684 == 0.219
     [7] 518.271 - 178.206 == 340.065
     [8] 0.577 - 0.419 == 0.158
     [9] 36.472 - 39.140 == -2.668
     ...
    
     ── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 31.2)
     [1] 1.608 - 1.382 == 0.226
     [2] 58.770 - 126.565 == -67.795
     [3] 5.225 - 5.028 == 0.197
     [4] 287.076 - 374.544 == -87.468
     [5] 200.839 - 254.605 == -53.766
     [6] 0.766 - 0.620 == 0.146
     [7] 451.707 - 611.235 == -159.528
     [8] 0.489 - 0.382 == 0.107
     [9] 31.430 - 34.318 == -2.888
     ...
    
     ── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.260616
    
     ── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.3261007
    
     ── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     348/471 mismatches (average diff: 3192816)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     352/475 mismatches (average diff: 3412242)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     216/478 mismatches (average diff: 1530280)
     [5] 6732569 - 6991767 == -259198
     [7] 7113182 - 13113549 == -6000367
     [8] 891715 - 913342 == -21627
     [9] 1073336 - 1189364 == -116028
     [10] 6727435 - 11974505 == -5247070
     [13] 85455 - 106052 == -20597
     [14] 84111 - 104508 == -20397
     [15] 41091 - 80094 == -39003
     [16] 558927 - 568834 == -9907
     ...
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 71 SKIPPED: 0 FAILED: 18
     1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
     2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
     3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
     4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
     5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
     6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
     7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
     8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
     9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [16s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_check("aLFQ")
     ── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.008767804
     Component "mfe": Mean relative difference: 0.01016523
    
     ── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1177339
     Component "mfe": Mean relative difference: 0.02141255
    
     ── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1907404
     Component "mfe": Mean relative difference: 0.1210566
    
     ── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 54.8)
     [1] 1.890 - 1.535 == 0.355
     [2] 68.017 - 145.936 == -77.919
     [3] 3.413 - 5.643 == -2.229
     [4] 319.335 - 435.817 == -116.482
     [5] 195.991 - 295.300 == -99.309
     [6] 0.903 - 0.684 == 0.219
     [7] 518.271 - 178.206 == 340.065
     [8] 0.577 - 0.419 == 0.158
     [9] 36.472 - 39.140 == -2.668
     ...
    
     ── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 31.2)
     [1] 1.608 - 1.382 == 0.226
     [2] 58.770 - 126.565 == -67.795
     [3] 5.225 - 5.028 == 0.197
     [4] 287.076 - 374.544 == -87.468
     [5] 200.839 - 254.605 == -53.766
     [6] 0.766 - 0.620 == 0.146
     [7] 451.707 - 611.235 == -159.528
     [8] 0.489 - 0.382 == 0.107
     [9] 31.430 - 34.318 == -2.888
     ...
    
     ── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.260616
    
     ── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.3261007
    
     ── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     348/471 mismatches (average diff: 3192816)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     352/475 mismatches (average diff: 3412242)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     216/478 mismatches (average diff: 1530280)
     [5] 6732569 - 6991767 == -259198
     [7] 7113182 - 13113549 == -6000367
     [8] 891715 - 913342 == -21627
     [9] 1073336 - 1189364 == -116028
     [10] 6727435 - 11974505 == -5247070
     [13] 85455 - 106052 == -20597
     [14] 84111 - 104508 == -20397
     [15] 41091 - 80094 == -39003
     [16] 558927 - 568834 == -9907
     ...
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 71 SKIPPED: 0 FAILED: 18
     1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
     2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
     3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
     4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
     5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
     6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
     7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
     8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
     9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.3.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [17s/19s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_check("aLFQ")
     ── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.008767804
     Component "mfe": Mean relative difference: 0.01016523
    
     ── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1177339
     Component "mfe": Mean relative difference: 0.02141255
    
     ── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1907404
     Component "mfe": Mean relative difference: 0.1210566
    
     ── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 54.8)
     [1] 1.890 - 1.535 == 0.355
     [2] 68.017 - 145.936 == -77.919
     [3] 3.413 - 5.643 == -2.229
     [4] 319.335 - 435.817 == -116.482
     [5] 195.991 - 295.300 == -99.309
     [6] 0.903 - 0.684 == 0.219
     [7] 518.271 - 178.206 == 340.065
     [8] 0.577 - 0.419 == 0.158
     [9] 36.472 - 39.140 == -2.668
     ...
    
     ── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 31.2)
     [1] 1.608 - 1.382 == 0.226
     [2] 58.770 - 126.565 == -67.795
     [3] 5.225 - 5.028 == 0.197
     [4] 287.076 - 374.544 == -87.468
     [5] 200.839 - 254.605 == -53.766
     [6] 0.766 - 0.620 == 0.146
     [7] 451.707 - 611.235 == -159.528
     [8] 0.489 - 0.382 == 0.107
     [9] 31.430 - 34.318 == -2.888
     ...
    
     ── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.260616
    
     ── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.3261007
    
     ── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     348/471 mismatches (average diff: 3192816)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     352/475 mismatches (average diff: 3412242)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     216/478 mismatches (average diff: 1530280)
     [5] 6732569 - 6991767 == -259198
     [7] 7113182 - 13113549 == -6000367
     [8] 891715 - 913342 == -21627
     [9] 1073336 - 1189364 == -116028
     [10] 6727435 - 11974505 == -5247070
     [13] 85455 - 106052 == -20597
     [14] 84111 - 104508 == -20397
     [15] 41091 - 80094 == -39003
     [16] 558927 - 568834 == -9907
     ...
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 71 SKIPPED: 0 FAILED: 18
     1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
     2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
     3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
     4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
     5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
     6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
     7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
     8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
     9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.3.4
Check: tests
Result: ERROR
     Running 'testthat.R' [14s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_check("aLFQ")
     -- 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.008767804
     Component "mfe": Mean relative difference: 0.01016523
    
     -- 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1177339
     Component "mfe": Mean relative difference: 0.02141255
    
     -- 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1907404
     Component "mfe": Mean relative difference: 0.1210566
    
     -- 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     -- 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     -- 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     -- 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     -- 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 54.8)
     [1] 1.890 - 1.535 == 0.355
     [2] 68.017 - 145.936 == -77.919
     [3] 3.413 - 5.643 == -2.229
     [4] 319.335 - 435.817 == -116.482
     [5] 195.991 - 295.300 == -99.309
     [6] 0.903 - 0.684 == 0.219
     [7] 518.271 - 178.206 == 340.065
     [8] 0.577 - 0.419 == 0.158
     [9] 36.472 - 39.140 == -2.668
     ...
    
     -- 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     -- 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     -- 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     -- 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     -- 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 31.2)
     [1] 1.608 - 1.382 == 0.226
     [2] 58.770 - 126.565 == -67.795
     [3] 5.225 - 5.028 == 0.197
     [4] 287.076 - 374.544 == -87.468
     [5] 200.839 - 254.605 == -53.766
     [6] 0.766 - 0.620 == 0.146
     [7] 451.707 - 611.235 == -159.528
     [8] 0.489 - 0.382 == 0.107
     [9] 31.430 - 34.318 == -2.888
     ...
    
     -- 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.260616
    
     -- 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.3261007
    
     -- 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     348/471 mismatches (average diff: 3192816)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     -- 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     352/475 mismatches (average diff: 3412242)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     -- 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     216/478 mismatches (average diff: 1530280)
     [5] 6732569 - 6991767 == -259198
     [7] 7113182 - 13113549 == -6000367
     [8] 891715 - 913342 == -21627
     [9] 1073336 - 1189364 == -116028
     [10] 6727435 - 11974505 == -5247070
     [13] 85455 - 106052 == -20597
     [14] 84111 - 104508 == -20397
     [15] 41091 - 80094 == -39003
     [16] 558927 - 568834 == -9907
     ...
    
     == testthat results ===========================================================
     OK: 71 SKIPPED: 0 FAILED: 18
     1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
     2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
     3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
     4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
     5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
     6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
     7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
     8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
     9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.3.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [21s/20s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_check("aLFQ")
     ── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.008767804
     Component "mfe": Mean relative difference: 0.01016523
    
     ── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1177339
     Component "mfe": Mean relative difference: 0.02141255
    
     ── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1907404
     Component "mfe": Mean relative difference: 0.1210566
    
     ── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 54.8)
     [1] 1.890 - 1.535 == 0.355
     [2] 68.017 - 145.936 == -77.919
     [3] 3.413 - 5.643 == -2.229
     [4] 319.335 - 435.817 == -116.482
     [5] 195.991 - 295.300 == -99.309
     [6] 0.903 - 0.684 == 0.219
     [7] 518.271 - 178.206 == 340.065
     [8] 0.577 - 0.419 == 0.158
     [9] 36.472 - 39.140 == -2.668
     ...
    
     ── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 31.2)
     [1] 1.608 - 1.382 == 0.226
     [2] 58.770 - 126.565 == -67.795
     [3] 5.225 - 5.028 == 0.197
     [4] 287.076 - 374.544 == -87.468
     [5] 200.839 - 254.605 == -53.766
     [6] 0.766 - 0.620 == 0.146
     [7] 451.707 - 611.235 == -159.528
     [8] 0.489 - 0.382 == 0.107
     [9] 31.430 - 34.318 == -2.888
     ...
    
     ── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.260616
    
     ── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.3261007
    
     ── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     348/471 mismatches (average diff: 3192816)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     352/475 mismatches (average diff: 3412242)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     216/478 mismatches (average diff: 1530280)
     [5] 6732569 - 6991767 == -259198
     [7] 7113182 - 13113549 == -6000367
     [8] 891715 - 913342 == -21627
     [9] 1073336 - 1189364 == -116028
     [10] 6727435 - 11974505 == -5247070
     [13] 85455 - 106052 == -20597
     [14] 84111 - 104508 == -20397
     [15] 41091 - 80094 == -39003
     [16] 558927 - 568834 == -9907
     ...
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 71 SKIPPED: 0 FAILED: 18
     1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
     2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
     3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
     4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
     5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
     6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
     7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
     8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
     9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.3.4
Check: tests
Result: ERROR
     Running ‘testthat.R’ [16s/23s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(aLFQ)
     >
     >
     > test_check("aLFQ")
     ── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.008767804
     Component "mfe": Mean relative difference: 0.01016523
    
     ── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1177339
     Component "mfe": Mean relative difference: 0.02141255
    
     ── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
     `x` not equal to `expected`.
     Component "r.squared": Mean relative difference: 0.1907404
     Component "mfe": Mean relative difference: 0.1210566
    
     ── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.03667919
     Component "r.squared": Mean relative difference: 0.007869293
     Component "calibration_covar": Mean relative difference: 0.03296972
    
     ── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.05345315
     Component "r.squared": Mean relative difference: 0.005571031
    
     ── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 54.8)
     [1] 1.890 - 1.535 == 0.355
     [2] 68.017 - 145.936 == -77.919
     [3] 3.413 - 5.643 == -2.229
     [4] 319.335 - 435.817 == -116.482
     [5] 195.991 - 295.300 == -99.309
     [6] 0.903 - 0.684 == 0.219
     [7] 518.271 - 178.206 == 340.065
     [8] 0.577 - 0.419 == 0.158
     [9] 36.472 - 39.140 == -2.668
     ...
    
     ── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01968494
     Component "r.squared": Mean relative difference: 0.0116243
     Component "calibration_covar": Mean relative difference: 0.05099257
    
     ── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     Component "mfe": Mean relative difference: 0.01512691
     Component "r.squared": Mean relative difference: 0.02429045
    
     ── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
     `x` not equal to `expected`.
     84/84 mismatches (average diff: 31.2)
     [1] 1.608 - 1.382 == 0.226
     [2] 58.770 - 126.565 == -67.795
     [3] 5.225 - 5.028 == 0.197
     [4] 287.076 - 374.544 == -87.468
     [5] 200.839 - 254.605 == -53.766
     [6] 0.766 - 0.620 == 0.146
     [7] 451.707 - 611.235 == -159.528
     [8] 0.489 - 0.382 == 0.107
     [9] 31.430 - 34.318 == -2.888
     ...
    
     ── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.260616
    
     ── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
     `x` not equal to `expected`.
     Component "concentration": 38 string mismatches
     Component "response": Mean relative difference: 0.3261007
    
     ── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     348/471 mismatches (average diff: 3192816)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     352/475 mismatches (average diff: 3412242)
     [2] 8299 - 19488 == -11188
     [5] 5627481 - 6015030 == -387550
     [6] 780238 - 627038 == 153200
     [7] 5259533 - 11635245 == -6375712
     [8] 796256 - 736551 == 59705
     [9] 1044268 - 1073336 == -29068
     [10] 3452488 - 11974505 == -8522017
     [11] 4008006 - 3786579 == 221427
     [12] 193491 - 218246 == -24755
     ...
    
     ── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
     `x` not equal to `expected`.
     216/478 mismatches (average diff: 1530280)
     [5] 6732569 - 6991767 == -259198
     [7] 7113182 - 13113549 == -6000367
     [8] 891715 - 913342 == -21627
     [9] 1073336 - 1189364 == -116028
     [10] 6727435 - 11974505 == -5247070
     [13] 85455 - 106052 == -20597
     [14] 84111 - 104508 == -20397
     [15] 41091 - 80094 == -39003
     [16] 558927 - 568834 == -9907
     ...
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 71 SKIPPED: 0 FAILED: 18
     1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
     2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
     3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
     4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
     5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
     6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
     7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
     8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
     9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86