Last updated on 2019-04-22 07:46:32 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 1.3.4 | 14.57 | 134.12 | 148.69 | ERROR | |
r-devel-linux-x86_64-debian-gcc | 1.3.4 | 12.85 | 111.98 | 124.83 | ERROR | |
r-devel-linux-x86_64-fedora-clang | 1.3.4 | 163.13 | ERROR | |||
r-devel-linux-x86_64-fedora-gcc | 1.3.4 | 162.09 | ERROR | |||
r-devel-windows-ix86+x86_64 | 1.3.4 | 41.00 | 178.00 | 219.00 | ERROR | |
r-patched-linux-x86_64 | 1.3.4 | 14.71 | 132.14 | 146.85 | ERROR | |
r-patched-solaris-x86 | 1.3.4 | 255.10 | ERROR | |||
r-release-linux-x86_64 | 1.3.4 | 10.14 | 124.31 | 134.45 | OK | |
r-release-windows-ix86+x86_64 | 1.3.4 | 18.00 | 195.00 | 213.00 | OK | |
r-release-osx-x86_64 | 1.3.4 | OK | ||||
r-oldrel-windows-ix86+x86_64 | 1.3.4 | 14.00 | 193.00 | 207.00 | OK | |
r-oldrel-osx-x86_64 | 1.3.4 | OK |
Version: 1.3.4
Check: tests
Result: ERROR
Running 'testthat.R' [20s/13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(aLFQ)
>
>
> test_check("aLFQ")
-- 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.008767804
Component "mfe": Mean relative difference: 0.01016523
-- 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1177339
Component "mfe": Mean relative difference: 0.02141255
-- 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1907404
Component "mfe": Mean relative difference: 0.1210566
-- 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
-- 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
-- 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
-- 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
-- 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
`x` not equal to `expected`.
84/84 mismatches (average diff: 54.8)
[1] 1.890 - 1.535 == 0.355
[2] 68.017 - 145.936 == -77.919
[3] 3.413 - 5.643 == -2.229
[4] 319.335 - 435.817 == -116.482
[5] 195.991 - 295.300 == -99.309
[6] 0.903 - 0.684 == 0.219
[7] 518.271 - 178.206 == 340.065
[8] 0.577 - 0.419 == 0.158
[9] 36.472 - 39.140 == -2.668
...
-- 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
-- 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
-- 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
-- 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
-- 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
84/84 mismatches (average diff: 31.2)
[1] 1.608 - 1.382 == 0.226
[2] 58.770 - 126.565 == -67.795
[3] 5.225 - 5.028 == 0.197
[4] 287.076 - 374.544 == -87.468
[5] 200.839 - 254.605 == -53.766
[6] 0.766 - 0.620 == 0.146
[7] 451.707 - 611.235 == -159.528
[8] 0.489 - 0.382 == 0.107
[9] 31.430 - 34.318 == -2.888
...
-- 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.260616
-- 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.3261007
-- 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
348/471 mismatches (average diff: 3192816)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
-- 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
352/475 mismatches (average diff: 3412242)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
-- 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
216/478 mismatches (average diff: 1530280)
[5] 6732569 - 6991767 == -259198
[7] 7113182 - 13113549 == -6000367
[8] 891715 - 913342 == -21627
[9] 1073336 - 1189364 == -116028
[10] 6727435 - 11974505 == -5247070
[13] 85455 - 106052 == -20597
[14] 84111 - 104508 == -20397
[15] 41091 - 80094 == -39003
[16] 558927 - 568834 == -9907
...
== testthat results ===========================================================
OK: 71 SKIPPED: 0 FAILED: 18
1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(aLFQ)
>
>
> test_check("aLFQ")
── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.008767804
Component "mfe": Mean relative difference: 0.01016523
── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1177339
Component "mfe": Mean relative difference: 0.02141255
── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1907404
Component "mfe": Mean relative difference: 0.1210566
── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
`x` not equal to `expected`.
84/84 mismatches (average diff: 54.8)
[1] 1.890 - 1.535 == 0.355
[2] 68.017 - 145.936 == -77.919
[3] 3.413 - 5.643 == -2.229
[4] 319.335 - 435.817 == -116.482
[5] 195.991 - 295.300 == -99.309
[6] 0.903 - 0.684 == 0.219
[7] 518.271 - 178.206 == 340.065
[8] 0.577 - 0.419 == 0.158
[9] 36.472 - 39.140 == -2.668
...
── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
84/84 mismatches (average diff: 31.2)
[1] 1.608 - 1.382 == 0.226
[2] 58.770 - 126.565 == -67.795
[3] 5.225 - 5.028 == 0.197
[4] 287.076 - 374.544 == -87.468
[5] 200.839 - 254.605 == -53.766
[6] 0.766 - 0.620 == 0.146
[7] 451.707 - 611.235 == -159.528
[8] 0.489 - 0.382 == 0.107
[9] 31.430 - 34.318 == -2.888
...
── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.260616
── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.3261007
── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
348/471 mismatches (average diff: 3192816)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
352/475 mismatches (average diff: 3412242)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
216/478 mismatches (average diff: 1530280)
[5] 6732569 - 6991767 == -259198
[7] 7113182 - 13113549 == -6000367
[8] 891715 - 913342 == -21627
[9] 1073336 - 1189364 == -116028
[10] 6727435 - 11974505 == -5247070
[13] 85455 - 106052 == -20597
[14] 84111 - 104508 == -20397
[15] 41091 - 80094 == -39003
[16] 558927 - 568834 == -9907
...
══ testthat results ═══════════════════════════════════════════════════════════
OK: 71 SKIPPED: 0 FAILED: 18
1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(aLFQ)
>
>
> test_check("aLFQ")
── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.008767804
Component "mfe": Mean relative difference: 0.01016523
── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1177339
Component "mfe": Mean relative difference: 0.02141255
── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1907404
Component "mfe": Mean relative difference: 0.1210566
── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
`x` not equal to `expected`.
84/84 mismatches (average diff: 54.8)
[1] 1.890 - 1.535 == 0.355
[2] 68.017 - 145.936 == -77.919
[3] 3.413 - 5.643 == -2.229
[4] 319.335 - 435.817 == -116.482
[5] 195.991 - 295.300 == -99.309
[6] 0.903 - 0.684 == 0.219
[7] 518.271 - 178.206 == 340.065
[8] 0.577 - 0.419 == 0.158
[9] 36.472 - 39.140 == -2.668
...
── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
84/84 mismatches (average diff: 31.2)
[1] 1.608 - 1.382 == 0.226
[2] 58.770 - 126.565 == -67.795
[3] 5.225 - 5.028 == 0.197
[4] 287.076 - 374.544 == -87.468
[5] 200.839 - 254.605 == -53.766
[6] 0.766 - 0.620 == 0.146
[7] 451.707 - 611.235 == -159.528
[8] 0.489 - 0.382 == 0.107
[9] 31.430 - 34.318 == -2.888
...
── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.260616
── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.3261007
── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
348/471 mismatches (average diff: 3192816)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
352/475 mismatches (average diff: 3412242)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
216/478 mismatches (average diff: 1530280)
[5] 6732569 - 6991767 == -259198
[7] 7113182 - 13113549 == -6000367
[8] 891715 - 913342 == -21627
[9] 1073336 - 1189364 == -116028
[10] 6727435 - 11974505 == -5247070
[13] 85455 - 106052 == -20597
[14] 84111 - 104508 == -20397
[15] 41091 - 80094 == -39003
[16] 558927 - 568834 == -9907
...
══ testthat results ═══════════════════════════════════════════════════════════
OK: 71 SKIPPED: 0 FAILED: 18
1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(aLFQ)
>
>
> test_check("aLFQ")
── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.008767804
Component "mfe": Mean relative difference: 0.01016523
── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1177339
Component "mfe": Mean relative difference: 0.02141255
── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1907404
Component "mfe": Mean relative difference: 0.1210566
── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
`x` not equal to `expected`.
84/84 mismatches (average diff: 54.8)
[1] 1.890 - 1.535 == 0.355
[2] 68.017 - 145.936 == -77.919
[3] 3.413 - 5.643 == -2.229
[4] 319.335 - 435.817 == -116.482
[5] 195.991 - 295.300 == -99.309
[6] 0.903 - 0.684 == 0.219
[7] 518.271 - 178.206 == 340.065
[8] 0.577 - 0.419 == 0.158
[9] 36.472 - 39.140 == -2.668
...
── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
84/84 mismatches (average diff: 31.2)
[1] 1.608 - 1.382 == 0.226
[2] 58.770 - 126.565 == -67.795
[3] 5.225 - 5.028 == 0.197
[4] 287.076 - 374.544 == -87.468
[5] 200.839 - 254.605 == -53.766
[6] 0.766 - 0.620 == 0.146
[7] 451.707 - 611.235 == -159.528
[8] 0.489 - 0.382 == 0.107
[9] 31.430 - 34.318 == -2.888
...
── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.260616
── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.3261007
── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
348/471 mismatches (average diff: 3192816)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
352/475 mismatches (average diff: 3412242)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
216/478 mismatches (average diff: 1530280)
[5] 6732569 - 6991767 == -259198
[7] 7113182 - 13113549 == -6000367
[8] 891715 - 913342 == -21627
[9] 1073336 - 1189364 == -116028
[10] 6727435 - 11974505 == -5247070
[13] 85455 - 106052 == -20597
[14] 84111 - 104508 == -20397
[15] 41091 - 80094 == -39003
[16] 558927 - 568834 == -9907
...
══ testthat results ═══════════════════════════════════════════════════════════
OK: 71 SKIPPED: 0 FAILED: 18
1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.4
Check: tests
Result: ERROR
Running 'testthat.R' [14s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(aLFQ)
>
>
> test_check("aLFQ")
-- 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.008767804
Component "mfe": Mean relative difference: 0.01016523
-- 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1177339
Component "mfe": Mean relative difference: 0.02141255
-- 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1907404
Component "mfe": Mean relative difference: 0.1210566
-- 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
-- 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
-- 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
-- 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
-- 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
`x` not equal to `expected`.
84/84 mismatches (average diff: 54.8)
[1] 1.890 - 1.535 == 0.355
[2] 68.017 - 145.936 == -77.919
[3] 3.413 - 5.643 == -2.229
[4] 319.335 - 435.817 == -116.482
[5] 195.991 - 295.300 == -99.309
[6] 0.903 - 0.684 == 0.219
[7] 518.271 - 178.206 == 340.065
[8] 0.577 - 0.419 == 0.158
[9] 36.472 - 39.140 == -2.668
...
-- 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
-- 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
-- 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
-- 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
-- 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
84/84 mismatches (average diff: 31.2)
[1] 1.608 - 1.382 == 0.226
[2] 58.770 - 126.565 == -67.795
[3] 5.225 - 5.028 == 0.197
[4] 287.076 - 374.544 == -87.468
[5] 200.839 - 254.605 == -53.766
[6] 0.766 - 0.620 == 0.146
[7] 451.707 - 611.235 == -159.528
[8] 0.489 - 0.382 == 0.107
[9] 31.430 - 34.318 == -2.888
...
-- 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.260616
-- 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.3261007
-- 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
348/471 mismatches (average diff: 3192816)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
-- 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
352/475 mismatches (average diff: 3412242)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
-- 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
216/478 mismatches (average diff: 1530280)
[5] 6732569 - 6991767 == -259198
[7] 7113182 - 13113549 == -6000367
[8] 891715 - 913342 == -21627
[9] 1073336 - 1189364 == -116028
[10] 6727435 - 11974505 == -5247070
[13] 85455 - 106052 == -20597
[14] 84111 - 104508 == -20397
[15] 41091 - 80094 == -39003
[16] 558927 - 568834 == -9907
...
== testthat results ===========================================================
OK: 71 SKIPPED: 0 FAILED: 18
1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [21s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(aLFQ)
>
>
> test_check("aLFQ")
── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.008767804
Component "mfe": Mean relative difference: 0.01016523
── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1177339
Component "mfe": Mean relative difference: 0.02141255
── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1907404
Component "mfe": Mean relative difference: 0.1210566
── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
`x` not equal to `expected`.
84/84 mismatches (average diff: 54.8)
[1] 1.890 - 1.535 == 0.355
[2] 68.017 - 145.936 == -77.919
[3] 3.413 - 5.643 == -2.229
[4] 319.335 - 435.817 == -116.482
[5] 195.991 - 295.300 == -99.309
[6] 0.903 - 0.684 == 0.219
[7] 518.271 - 178.206 == 340.065
[8] 0.577 - 0.419 == 0.158
[9] 36.472 - 39.140 == -2.668
...
── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
84/84 mismatches (average diff: 31.2)
[1] 1.608 - 1.382 == 0.226
[2] 58.770 - 126.565 == -67.795
[3] 5.225 - 5.028 == 0.197
[4] 287.076 - 374.544 == -87.468
[5] 200.839 - 254.605 == -53.766
[6] 0.766 - 0.620 == 0.146
[7] 451.707 - 611.235 == -159.528
[8] 0.489 - 0.382 == 0.107
[9] 31.430 - 34.318 == -2.888
...
── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.260616
── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.3261007
── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
348/471 mismatches (average diff: 3192816)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
352/475 mismatches (average diff: 3412242)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
216/478 mismatches (average diff: 1530280)
[5] 6732569 - 6991767 == -259198
[7] 7113182 - 13113549 == -6000367
[8] 891715 - 913342 == -21627
[9] 1073336 - 1189364 == -116028
[10] 6727435 - 11974505 == -5247070
[13] 85455 - 106052 == -20597
[14] 84111 - 104508 == -20397
[15] 41091 - 80094 == -39003
[16] 558927 - 568834 == -9907
...
══ testthat results ═══════════════════════════════════════════════════════════
OK: 71 SKIPPED: 0 FAILED: 18
1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(aLFQ)
>
>
> test_check("aLFQ")
── 1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.008767804
Component "mfe": Mean relative difference: 0.01016523
── 2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1177339
Component "mfe": Mean relative difference: 0.02141255
── 3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantific
`x` not equal to `expected`.
Component "r.squared": Mean relative difference: 0.1907404
Component "mfe": Mean relative difference: 0.1210566
── 4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.03667919
Component "r.squared": Mean relative difference: 0.007869293
Component "calibration_covar": Mean relative difference: 0.03296972
── 6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.05345315
Component "r.squared": Mean relative difference: 0.005571031
── 8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62
`x` not equal to `expected`.
84/84 mismatches (average diff: 54.8)
[1] 1.890 - 1.535 == 0.355
[2] 68.017 - 145.936 == -77.919
[3] 3.413 - 5.643 == -2.229
[4] 319.335 - 435.817 == -116.482
[5] 195.991 - 295.300 == -99.309
[6] 0.903 - 0.684 == 0.219
[7] 518.271 - 178.206 == 340.065
[8] 0.577 - 0.419 == 0.158
[9] 36.472 - 39.140 == -2.668
...
── 9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 10. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01968494
Component "r.squared": Mean relative difference: 0.0116243
Component "calibration_covar": Mean relative difference: 0.05099257
── 11. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 12. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
Component "mfe": Mean relative difference: 0.01512691
Component "r.squared": Mean relative difference: 0.02429045
── 13. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#7
`x` not equal to `expected`.
84/84 mismatches (average diff: 31.2)
[1] 1.608 - 1.382 == 0.226
[2] 58.770 - 126.565 == -67.795
[3] 5.225 - 5.028 == 0.197
[4] 287.076 - 374.544 == -87.468
[5] 200.839 - 254.605 == -53.766
[6] 0.766 - 0.620 == 0.146
[7] 451.707 - 611.235 == -159.528
[8] 0.489 - 0.382 == 0.107
[9] 31.430 - 34.318 == -2.888
...
── 14. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.260616
── 15. Failure: ProteinInference.default: More complex data (@test_ProteinInfere
`x` not equal to `expected`.
Component "concentration": 38 string mismatches
Component "response": Mean relative difference: 0.3261007
── 16. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
348/471 mismatches (average diff: 3192816)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 17. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
352/475 mismatches (average diff: 3412242)
[2] 8299 - 19488 == -11188
[5] 5627481 - 6015030 == -387550
[6] 780238 - 627038 == 153200
[7] 5259533 - 11635245 == -6375712
[8] 796256 - 736551 == 59705
[9] 1044268 - 1073336 == -29068
[10] 3452488 - 11974505 == -8522017
[11] 4008006 - 3786579 == 221427
[12] 193491 - 218246 == -24755
...
── 18. Failure: PeptideInference: More complex data (@test_ProteinInference.R#18
`x` not equal to `expected`.
216/478 mismatches (average diff: 1530280)
[5] 6732569 - 6991767 == -259198
[7] 7113182 - 13113549 == -6000367
[8] 891715 - 913342 == -21627
[9] 1073336 - 1189364 == -116028
[10] 6727435 - 11974505 == -5247070
[13] 85455 - 106052 == -20597
[14] 84111 - 104508 == -20397
[15] 41091 - 80094 == -39003
[16] 558927 - 568834 == -9907
...
══ testthat results ═══════════════════════════════════════════════════════════
OK: 71 SKIPPED: 0 FAILED: 18
1. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#26)
2. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#29)
3. Failure: cval.AbsoluteQuantification: Monte Carlo (@test_AbsoluteQuantification.R#32)
4. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#57)
5. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#58)
6. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#59)
7. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#60)
8. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#62)
9. Failure: AbsoluteQuantification.default (@test_AbsoluteQuantification.R#69)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86