CRAN Package Check Results for Package degenes

Last updated on 2019-04-22 07:46:38 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.1	1.49	16.82	18.31	ERROR
r-devel-linux-x86_64-debian-gcc	1.1	1.30	13.89	15.19	ERROR
r-devel-linux-x86_64-fedora-clang	1.1			22.63	ERROR
r-devel-linux-x86_64-fedora-gcc	1.1			21.33	ERROR
r-devel-windows-ix86+x86_64	1.1	5.00	28.00	33.00	ERROR
r-patched-linux-x86_64	1.1	1.56	16.78	18.34	ERROR
r-patched-solaris-x86	1.1			34.50	ERROR
r-release-linux-x86_64	1.1	0.82	16.92	17.74	NOTE
r-release-windows-ix86+x86_64	1.1	3.00	28.00	31.00	NOTE
r-release-osx-x86_64	1.1				NOTE
r-oldrel-windows-ix86+x86_64	1.1	2.00	27.00	29.00	NOTE
r-oldrel-osx-x86_64	1.1				NOTE

Check Details

Version: 1.1
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    kern: no visible global function definition for 'var'
    kern: no visible global function definition for 'dnorm'
    pdeg: no visible global function definition for 'var'
    pdeg: no visible global function definition for 'dnorm'
    z.b: no visible binding for global variable 'var'
    z.s: no visible binding for global variable 'var'
    Undefined global functions or variables:
     dnorm var
    Consider adding
     importFrom("stats", "dnorm", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1
Check: examples
Result: ERROR
    Running examples in 'degenes-Ex.R' failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: deg
    > ### Title: Detection of differentially expressed genes.
    > ### Aliases: deg
    >
    > ### ** Examples
    >
    > X1 = matrix(rnorm(2000, 0, 1), 200, 10)
    > X2 = matrix(rnorm(2000, 0, 1), 200, 10)
    > index = sample(1:200, 5, replace=FALSE)
    > X2[index,] = X2[index,] + 5
    > D = deg(X1, X2)
    Sun Apr 21 20:54:11 2019
    Calculation of Z
    Calculation of z
    Calculation of the kernel estimator
    Calculation of the kernel estimator
    Determination of the rejection region
    Error in if (integral > single.alpha) c1 <- c :
     missing value where TRUE/FALSE needed
    Calls: deg
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1
Check: examples
Result: ERROR
    Running examples in ‘degenes-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: deg
    > ### Title: Detection of differentially expressed genes.
    > ### Aliases: deg
    >
    > ### ** Examples
    >
    > X1 = matrix(rnorm(2000, 0, 1), 200, 10)
    > X2 = matrix(rnorm(2000, 0, 1), 200, 10)
    > index = sample(1:200, 5, replace=FALSE)
    > X2[index,] = X2[index,] + 5
    > D = deg(X1, X2)
    Sun Apr 21 19:18:52 2019
    Calculation of Z
    Calculation of z
    Calculation of the kernel estimator
    Calculation of the kernel estimator
    Determination of the rejection region
    Error in if (integral > single.alpha) c1 <- c :
     missing value where TRUE/FALSE needed
    Calls: deg
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1
Check: examples
Result: ERROR
    Running examples in ‘degenes-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: deg
    > ### Title: Detection of differentially expressed genes.
    > ### Aliases: deg
    >
    > ### ** Examples
    >
    > X1 = matrix(rnorm(2000, 0, 1), 200, 10)
    > X2 = matrix(rnorm(2000, 0, 1), 200, 10)
    > index = sample(1:200, 5, replace=FALSE)
    > X2[index,] = X2[index,] + 5
    > D = deg(X1, X2)
    Sat Apr 20 14:17:29 2019
    Calculation of Z
    Calculation of z
    Calculation of the kernel estimator
    Calculation of the kernel estimator
    Determination of the rejection region
    Error in if (integral > single.alpha) c1 <- c :
     missing value where TRUE/FALSE needed
    Calls: deg
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1
Check: examples
Result: ERROR
    Running examples in ‘degenes-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: deg
    > ### Title: Detection of differentially expressed genes.
    > ### Aliases: deg
    >
    > ### ** Examples
    >
    > X1 = matrix(rnorm(2000, 0, 1), 200, 10)
    > X2 = matrix(rnorm(2000, 0, 1), 200, 10)
    > index = sample(1:200, 5, replace=FALSE)
    > X2[index,] = X2[index,] + 5
    > D = deg(X1, X2)
    Sun Apr 21 13:49:54 2019
    Calculation of Z
    Calculation of z
    Calculation of the kernel estimator
    Calculation of the kernel estimator
    Determination of the rejection region
    Error in if (integral > single.alpha) c1 <- c :
     missing value where TRUE/FALSE needed
    Calls: deg
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1
Check: examples
Result: ERROR
    Running examples in 'degenes-Ex.R' failed
    The error most likely occurred in:

    > ### Name: deg
    > ### Title: Detection of differentially expressed genes.
    > ### Aliases: deg
    >
    > ### ** Examples
    >
    > X1 = matrix(rnorm(2000, 0, 1), 200, 10)
    > X2 = matrix(rnorm(2000, 0, 1), 200, 10)
    > index = sample(1:200, 5, replace=FALSE)
    > X2[index,] = X2[index,] + 5
    > D = deg(X1, X2)
    Sun Apr 21 02:32:39 2019
    Calculation of Z
    Calculation of z
    Calculation of the kernel estimator
    Calculation of the kernel estimator
    Determination of the rejection region
    Error in if (integral > single.alpha) c1 <- c :
     missing value where TRUE/FALSE needed
    Calls: deg
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1
Check: examples
Result: ERROR
    Running examples in ‘degenes-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: deg
    > ### Title: Detection of differentially expressed genes.
    > ### Aliases: deg
    >
    > ### ** Examples
    >
    > X1 = matrix(rnorm(2000, 0, 1), 200, 10)
    > X2 = matrix(rnorm(2000, 0, 1), 200, 10)
    > index = sample(1:200, 5, replace=FALSE)
    > X2[index,] = X2[index,] + 5
    > D = deg(X1, X2)
    Fri Apr 19 20:45:06 2019
    Calculation of Z
    Calculation of z
    Calculation of the kernel estimator
    Calculation of the kernel estimator
    Determination of the rejection region
    Error in if (integral > single.alpha) c1 <- c :
     missing value where TRUE/FALSE needed
    Calls: deg
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.1
Check: examples
Result: ERROR
    Running examples in ‘degenes-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: deg
    > ### Title: Detection of differentially expressed genes.
    > ### Aliases: deg
    >
    > ### ** Examples
    >
    > X1 = matrix(rnorm(2000, 0, 1), 200, 10)
    > X2 = matrix(rnorm(2000, 0, 1), 200, 10)
    > index = sample(1:200, 5, replace=FALSE)
    > X2[index,] = X2[index,] + 5
    > D = deg(X1, X2)
    Tue Apr 16 20:12:51 2019
    Calculation of Z
    Calculation of z
    Calculation of the kernel estimator
    Calculation of the kernel estimator
    Determination of the rejection region
    Error in if (integral > single.alpha) c1 <- c :
     missing value where TRUE/FALSE needed
    Calls: deg
    Execution halted
Flavor: r-patched-solaris-x86