Last updated on 2019-04-22 07:46:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | 2.35 | 297.78 | 300.13 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.4 | 2.20 | 214.11 | 216.31 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 335.82 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 337.99 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.4 | 7.00 | 278.00 | 285.00 | ERROR | |
| r-patched-linux-x86_64 | 1.4 | 2.42 | 291.09 | 293.51 | ERROR | |
| r-patched-solaris-x86 | 1.4 | 413.90 | ERROR | |||
| r-release-linux-x86_64 | 1.4 | 1.97 | 281.33 | 283.30 | OK | |
| r-release-windows-ix86+x86_64 | 1.4 | 4.00 | 347.00 | 351.00 | OK | |
| r-release-osx-x86_64 | 1.4 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.4 | 3.00 | 423.00 | 426.00 | OK | |
| r-oldrel-osx-x86_64 | 1.4 | WARN |
Version: 1.4
Check: tests
Result: ERROR
Running 'testthat.R' [126s/134s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
>
> test_check("nLTT")
[1] "/home/hornik"
Generating Particles for iteration 1
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 2
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 3
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 4
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 5
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 6
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 7
0--------25--------50--------75--------100
*[1] "/home/hornik"
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*-- 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ---------------
0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.138 - 0.105 == 0.0333
-- 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ---------------
0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
1/1 mismatches
[1] 0.0241 - 0.0165 == 0.00753
-- 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) -----------------
0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.111 - 0.063 == 0.0478
== testthat results ===========================================================
OK: 177 SKIPPED: 1 FAILED: 3
1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [90s/128s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
>
> test_check("nLTT")
[1] "/home/hornik"
Generating Particles for iteration 1
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 2
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 3
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 4
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 5
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 6
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 7
0--------25--------50--------75--------100
*[1] "/home/hornik"
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.138 - 0.105 == 0.0333
── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
1/1 mismatches
[1] 0.0241 - 0.0165 == 0.00753
── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.111 - 0.063 == 0.0478
══ testthat results ═══════════════════════════════════════════════════════════
OK: 177 SKIPPED: 1 FAILED: 3
1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘deSolve’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [140s/154s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
>
> test_check("nLTT")
[1] "/data/gannet/ripley"
Generating Particles for iteration 1
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 2
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 3
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 4
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 5
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 6
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 7
0--------25--------50--------75--------100
*[1] "/data/gannet/ripley"
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.138 - 0.105 == 0.0333
── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
1/1 mismatches
[1] 0.0241 - 0.0165 == 0.00753
── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.111 - 0.063 == 0.0478
══ testthat results ═══════════════════════════════════════════════════════════
OK: 177 SKIPPED: 1 FAILED: 3
1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [141s/339s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
>
> test_check("nLTT")
[1] "/data/gannet/ripley"
Generating Particles for iteration 1
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 2
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 3
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 4
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 5
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 6
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 7
0--------25--------50--------75--------100
*[1] "/data/gannet/ripley"
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.138 - 0.105 == 0.0333
── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
1/1 mismatches
[1] 0.0241 - 0.0165 == 0.00753
── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.111 - 0.063 == 0.0478
══ testthat results ═══════════════════════════════════════════════════════════
OK: 177 SKIPPED: 1 FAILED: 3
1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4
Check: tests
Result: ERROR
Running 'testthat.R' [107s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
>
> test_check("nLTT")
[1] "C:\\Users\\CRAN\\Documents"
Generating Particles for iteration 1
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 2
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 3
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 4
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 5
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 6
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 7
0--------25--------50--------75--------100
*[1] "C:\\Users\\CRAN\\Documents"
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*-- 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ---------------
0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.138 - 0.105 == 0.0333
-- 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ---------------
0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
1/1 mismatches
[1] 0.0241 - 0.0165 == 0.00753
-- 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) -----------------
0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.111 - 0.063 == 0.0478
== testthat results ===========================================================
OK: 177 SKIPPED: 1 FAILED: 3
1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [122s/132s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
>
> test_check("nLTT")
[1] "/home/hornik"
Generating Particles for iteration 1
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 2
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 3
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 4
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 5
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 6
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 7
0--------25--------50--------75--------100
*[1] "/home/hornik"
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.138 - 0.105 == 0.0333
── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
1/1 mismatches
[1] 0.0241 - 0.0165 == 0.00753
── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.111 - 0.063 == 0.0478
══ testthat results ═══════════════════════════════════════════════════════════
OK: 177 SKIPPED: 1 FAILED: 3
1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [164s/197s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nLTT) # nolint keep package name non-all-lowercase, due to backwards compatibility
>
> test_check("nLTT")
[1] "/home/ripley"
Generating Particles for iteration 1
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 2
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 3
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 4
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 5
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 6
0--------25--------50--------75--------100
*****************************************
Generating Particles for iteration 7
0--------25--------50--------75--------100
*[1] "/home/ripley"
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*********************************************
Finished MCMC.
Generating Chain
0--------25--------50--------75--------100
*── 1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27) ───────────────
0.1380347 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.138 - 0.105 == 0.0333
── 2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39) ───────────────
0.02407742 not equal to nLTTstat(tree1 = p, tree2 = q, distance_method = "squ").
1/1 mismatches
[1] 0.0241 - 0.0165 == 0.00753
── 3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18) ─────────────────
0.1108467 not equal to nLTTstat_exact(tree1 = p, tree2 = q, distance_method = "abs").
1/1 mismatches
[1] 0.111 - 0.063 == 0.0478
══ testthat results ═══════════════════════════════════════════════════════════
OK: 177 SKIPPED: 1 FAILED: 3
1. Failure: abs nLTTstat on known tree (@test-nLTTstat.R#27)
2. Failure: squ nLTTstat on known tree (@test-nLTTstat.R#39)
3. Failure: nLTTstat_exact use (@test-nLTTstat_exact.R#18)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.4
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Error: processing vignette 'walkthrough.Rmd' failed with diagnostics:
(converted from warning) Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64