Last updated on 2019-04-22 07:47:02 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3 | 4.43 | 45.94 | 50.37 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3 | 3.49 | 34.15 | 37.64 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3 | 58.40 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3 | 53.74 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.3 | 9.00 | 48.00 | 57.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3 | 4.83 | 44.61 | 49.44 | ERROR | |
| r-patched-solaris-x86 | 1.3 | 79.20 | ERROR | |||
| r-release-linux-x86_64 | 1.3 | 3.12 | 45.81 | 48.93 | OK | |
| r-release-windows-ix86+x86_64 | 1.3 | 5.00 | 55.00 | 60.00 | OK | |
| r-release-osx-x86_64 | 1.3 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3 | 3.00 | 92.00 | 95.00 | OK | |
| r-oldrel-osx-x86_64 | 1.3 | OK |
Version: 1.3
Check: examples
Result: ERROR
Running examples in 'seedy-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: simulateoutbreak
> ### Title: Simulate transmission and evolutionary dynamics
> ### Aliases: simulateoutbreak
>
> ### ** Examples
>
>
> W <- simulateoutbreak(init.sus=10, inf.rate=0.002, rem.rate=0.001, mut.rate=0.0001,
+ equi.pop=2000, inoc.size=1, samples.per.time=10,
+ samp.schedule="calendar", samp.freq=500, mincases=3)
Simulating outbreak:
N=2000, b=1, beta=0.002, gamma=0.001, mu=1e-04
Attempt 1
t=500, S=10, I=1, total genotypes=3, next rec time=747
t=1000, S=8, I=1, total genotypes=6, next rec time=1035
t=1035, S=8, I=0, total genotypes=0
Insufficient number of infections! (mincases=3)
Attempt 2
t=500, S=10, I=1, total genotypes=3, next rec time=833
t=1000, S=9, I=1, total genotypes=2, next rec time=5629
Error in strain.log[[newinfect]] <- unique(inoc.samp) :
attempt to select more than one element in integerOneIndex
Calls: simulateoutbreak
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.3
Check: examples
Result: ERROR
Running examples in ‘seedy-Ex.R’ failed
The error most likely occurred in:
> ### Name: simulateoutbreak
> ### Title: Simulate transmission and evolutionary dynamics
> ### Aliases: simulateoutbreak
>
> ### ** Examples
>
>
> W <- simulateoutbreak(init.sus=10, inf.rate=0.002, rem.rate=0.001, mut.rate=0.0001,
+ equi.pop=2000, inoc.size=1, samples.per.time=10,
+ samp.schedule="calendar", samp.freq=500, mincases=3)
Simulating outbreak:
N=2000, b=1, beta=0.002, gamma=0.001, mu=1e-04
Attempt 1
t=500, S=10, I=1, total genotypes=3, next rec time=747
t=1000, S=8, I=1, total genotypes=6, next rec time=1035
t=1035, S=8, I=0, total genotypes=0
Insufficient number of infections! (mincases=3)
Attempt 2
t=500, S=10, I=1, total genotypes=3, next rec time=833
t=1000, S=9, I=1, total genotypes=2, next rec time=5629
Error in strain.log[[newinfect]] <- unique(inoc.samp) :
attempt to select more than one element in integerOneIndex
Calls: simulateoutbreak
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86