CRAN Package Check Results for Package biomartr

Last updated on 2019-05-19 15:47:48 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.8.0	18.94	163.90	182.84	ERROR
r-devel-linux-x86_64-debian-gcc	0.8.0	16.27	131.81	148.08	ERROR
r-devel-linux-x86_64-fedora-clang	0.8.0			219.17	ERROR
r-devel-linux-x86_64-fedora-gcc	0.8.0			217.07	ERROR
r-devel-windows-ix86+x86_64	0.8.0	56.00	258.00	314.00	ERROR
r-patched-linux-x86_64	0.8.0	20.23	164.89	185.12	ERROR
r-patched-solaris-x86	0.8.0			332.30	ERROR
r-release-linux-x86_64	0.8.0	18.70	164.03	182.73	ERROR
r-release-windows-ix86+x86_64	0.8.0	65.00	270.00	335.00	ERROR
r-release-osx-x86_64	0.8.0				ERROR
r-oldrel-windows-ix86+x86_64	0.8.0	33.00	239.00	272.00	ERROR
r-oldrel-osx-x86_64	0.8.0				OK

Check Details

Version: 0.8.0
Check: tests
Result: ERROR
     Running 'testthat.R' [7s/15s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     -- 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     Content type 'unknown' length 2972019 bytes (2.8 MB)
     ==================================================
     == testthat results ===========================================================
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.8.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [6s/15s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     ── 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     Content type 'unknown' length 2972019 bytes (2.8 MB)
     ==================================================
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.8.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [8s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     ── 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     Content type 'unknown' length 2972019 bytes (2.8 MB)
     ==================================================
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [8s/22s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     ── 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     Content type 'unknown' length 2971384 bytes (2.8 MB)
     ==================================================
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.8.0
Check: tests
Result: ERROR
     Running 'testthat.R' [14s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     -- 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     .......... .......... .......... .......... ..........
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     .
     downloaded 2.8 MB

     == testthat results ===========================================================
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.8.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/22s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     ── 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     Content type 'unknown' length 2972019 bytes (2.8 MB)
     ==================================================
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.8.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/54s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     ── 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     Content type 'unknown' length 2971384 bytes (2.8 MB)
     ==================================================
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.8.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [7s/14s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     ── 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
     Content type 'unknown' length 2972019 bytes (2.8 MB)
     ==================================================
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.8.0
Check: tests
Result: ERROR
     Running 'testthat.R' [26s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     -- 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
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     ..
     downloaded 2.8 MB

     == testthat results ===========================================================
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.8.0
Check: package dependencies
Result: ERROR
    Packages required but not available: 'biomaRt', 'Biostrings'

    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 0.8.0
Check: tests
Result: ERROR
     Running 'testthat.R' [18s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(biomartr)
     >
     > test_check("biomartr")
     -- 1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getEN
     The API 'http://rest.ensemblgenomes.org' does not
     seem to work properly. Are you connected to the internet?
     Is the homepage 'http://rest.ensemblgenomes.org'
     currently available?
     1: getENSEMBLGENOMESInfo() at testthat/test-getENSEMBLGENOMESInfo.R:6
     2: get.ensemblgenome.info(update = TRUE)
     3: stop("The API 'http://rest.ensemblgenomes.org' does not \n seem to work properly. Are you connected to the internet? \n Is the homepage 'http://rest.ensemblgenomes.org' \n currently available?",
     call. = FALSE)

     trying URL 'ftp://ftp.ncbi.nlm.nih.gov/genomes/genbank/metagenomes/assembly_summary.txt'
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     .
     downloaded 2.8 MB

     == testthat results ===========================================================
     OK: 2 SKIPPED: 105 WARNINGS: 0 FAILED: 1
     1. Error: The getENSEMBLGENOMESInfo() interface works properly.. (@test-getENSEMBLGENOMESInfo.R#6)

     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64