CRAN Package Check Results for Package sicegar

Last updated on 2019-07-27 10:48:05 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.2 2.79 90.64 93.43 WARN
r-devel-linux-x86_64-debian-gcc 0.2.2 2.54 68.02 70.56 WARN
r-devel-linux-x86_64-fedora-clang 0.2.2 116.84 WARN
r-devel-linux-x86_64-fedora-gcc 0.2.2 107.41 WARN
r-devel-windows-ix86+x86_64 0.2.2 9.00 107.00 116.00 WARN
r-patched-linux-x86_64 0.2.2 2.87 90.23 93.10 WARN
r-patched-solaris-x86 0.2.2 125.50 WARN
r-release-linux-x86_64 0.2.2 3.27 88.67 91.94 WARN
r-release-windows-ix86+x86_64 0.2.2 8.00 139.00 147.00 WARN
r-release-osx-x86_64 0.2.2 NOTE
r-oldrel-windows-ix86+x86_64 0.2.2 9.00 96.00 105.00 OK
r-oldrel-osx-x86_64 0.2.2 NOTE

Check Details

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'additional_parameters.Rmd' using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building 'additional_parameters.Rmd'
    
    --- re-building 'categorizing_fits.Rmd' using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building 'categorizing_fits.Rmd'
    
    --- re-building 'fitting_individual_models.Rmd' using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building 'fitting_individual_models.Rmd'
    
    --- re-building 'introduction.Rmd' using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    Quitting from lines 56-70 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    could not find function "ggplot"
    --- failed re-building 'introduction.Rmd'
    
    --- re-building 'plotting_fitted_models.Rmd' using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building 'plotting_fitted_models.Rmd'
    
    SUMMARY: processing the following file failed:
     'introduction.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.2
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘dplyr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘additional_parameters.Rmd’ using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building ‘additional_parameters.Rmd’
    
    --- re-building ‘categorizing_fits.Rmd’ using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building ‘categorizing_fits.Rmd’
    
    --- re-building ‘fitting_individual_models.Rmd’ using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building ‘fitting_individual_models.Rmd’
    
    --- re-building ‘introduction.Rmd’ using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    Quitting from lines 56-70 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    could not find function "ggplot"
    --- failed re-building ‘introduction.Rmd’
    
    --- re-building ‘plotting_fitted_models.Rmd’ using rmarkdown
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building ‘plotting_fitted_models.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘introduction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'additional_parameters.Rmd' using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building 'additional_parameters.Rmd'
    
    --- re-building 'categorizing_fits.Rmd' using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building 'categorizing_fits.Rmd'
    
    --- re-building 'fitting_individual_models.Rmd' using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building 'fitting_individual_models.Rmd'
    
    --- re-building 'introduction.Rmd' using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    Quitting from lines 56-70 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    could not find function "ggplot"
    --- failed re-building 'introduction.Rmd'
    
    --- re-building 'plotting_fitted_models.Rmd' using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building 'plotting_fitted_models.Rmd'
    
    SUMMARY: processing the following file failed:
     'introduction.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘additional_parameters.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building ‘additional_parameters.Rmd’
    
    --- re-building ‘categorizing_fits.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building ‘categorizing_fits.Rmd’
    
    --- re-building ‘fitting_individual_models.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    --- finished re-building ‘fitting_individual_models.Rmd’
    
    --- re-building ‘introduction.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    Quitting from lines 56-70 (introduction.Rmd)
    Error: processing vignette 'introduction.Rmd' failed with diagnostics:
    could not find function "ggplot"
    --- failed re-building ‘introduction.Rmd’
    
    --- re-building ‘plotting_fitted_models.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: sicegar
    Loading required package: dplyr
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: ggplot2
    Loading required package: cowplot
    
    ********************************************************
    Note: As of version 1.0.0, cowplot does not change the
     default ggplot2 theme anymore. To recover the previous
     behavior, execute:
     theme_set(theme_cowplot())
    ********************************************************
    
    --- finished re-building ‘plotting_fitted_models.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘introduction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86