Last updated on 2019-09-04 06:50:03 CEST.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 0.6.2 | ERROR | ||||
r-devel-linux-x86_64-debian-gcc | 0.6.2 | 190.87 | 56.58 | 247.45 | ERROR | |
r-devel-linux-x86_64-fedora-clang | 0.6.2 | 463.44 | ERROR | |||
r-devel-linux-x86_64-fedora-gcc | 0.6.2 | 434.60 | ERROR | |||
r-devel-windows-ix86+x86_64 | 0.6.2 | 620.00 | 135.00 | 755.00 | NOTE | |
r-patched-linux-x86_64 | 0.6.2 | 189.32 | 70.86 | 260.18 | ERROR | |
r-patched-solaris-x86 | 0.6.2 | 28.90 | ERROR | |||
r-release-linux-x86_64 | 0.6.2 | 202.37 | 69.84 | 272.21 | ERROR | |
r-release-windows-ix86+x86_64 | 0.6.2 | 552.00 | 171.00 | 723.00 | NOTE | |
r-release-osx-x86_64 | 0.6.2 | ERROR | ||||
r-oldrel-windows-ix86+x86_64 | 0.6.2 | 433.00 | 185.00 | 618.00 | NOTE | |
r-oldrel-osx-x86_64 | 0.6.2 | ERROR |
Version: 0.6.2
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: examples
Result: ERROR
Running examples in 'orthoDr-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predict.orthoDr
> ### Title: predict.orthoDr
> ### Aliases: predict.orthoDr
>
> ### ** Examples
>
> # generate some survival data
> N = 100; P = 4; dataX = matrix(rnorm(N*P), N, P)
> Y = exp(-1 + dataX[,1] + rnorm(N))
> Censor = rbinom(N, 1, 0.8)
>
> # fit the model with keep.data = TRUE
> orthoDr.fit = orthoDr_surv(dataX, Y, Censor, ndr = 1,
+ method = "dm", keep.data = TRUE)
>
> #predict 10 new observations
> predict(orthoDr.fit, matrix(rnorm(10*P), 10, P))
Prediction for orthoDr Survival: 10 testing subjects at 79 time points
See 'surv' and 'timepoints'.>
> # generate some personalized dose scenario
>
> exampleset <- function(size,ncov){
+
+ X = matrix(runif(size*ncov,-1,1),ncol=ncov)
+ A = runif(size,0,2)
+
+ Edr = as.matrix(c(0.5,-0.5))
+
+ D_opt = X %*% Edr + 1
+
+ mu = 2 + 0.5*(X %*% Edr) - 7*abs(D_opt-A)
+
+ R = rnorm(length(mu),mu,1)
+
+ R = R - min(R)
+
+ datainfo = list(X=X,A=A,R=R,D_opt=D_opt,mu=mu)
+ return(datainfo)
+ }
>
> # generate data
>
> set.seed(123)
> n = 150
> p = 2
> ndr =1
> train = exampleset(n,p)
> test = exampleset(500,p)
>
> # the direct learning method
> orthofit = orthoDr_pdose(train$X, train$A, train$R, ndr = ndr, lambda = 0.1,
+ method = "direct", K = sqrt(n), keep.data = TRUE,
+ maxitr = 150, verbose = FALSE)
error: Mat::elem(): index out of bounds
Error in pdose_direct_solver(B.initial, X, a, A.dist, cdose, r, lambda, :
Mat::elem(): index out of bounds
Calls: orthoDr_pdose -> pdose_direct_solver
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.6.2
Check: examples
Result: ERROR
Running examples in ‘orthoDr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: orthoDr_pdose
> ### Title: orthoDr_pdose model
> ### Aliases: orthoDr_pdose
>
> ### ** Examples
>
> # generate some personalized dose scenario
>
> exampleset <- function(size,ncov){
+
+ X = matrix(runif(size*ncov,-1,1),ncol=ncov)
+ A = runif(size,0,2)
+
+ Edr = as.matrix(c(0.5,-0.5))
+
+ D_opt = X %*% Edr +1
+
+ mu = 2 + 0.5*(X %*% Edr) - 7*abs(D_opt-A)
+
+ R = rnorm(length(mu),mu,1)
+
+ R = R - min(R)
+
+ datainfo = list(X=X,A=A,R=R,D_opt=D_opt,mu=mu)
+ return(datainfo)
+ }
>
> # generate data
>
> set.seed(123)
> n = 150
> p = 2
> ndr =1
> train = exampleset(n,p)
> test = exampleset(500,p)
>
> # the direct learning method
> orthofit = orthoDr_pdose(train$X,train$A,train$R,ndr = ndr,lambda = 0.1,
+ method = "direct", K = sqrt(n),keep.data = TRUE,
+ maxitr = 150,verbose = FALSE)
error: Mat::elem(): index out of bounds
Error in pdose_direct_solver(B.initial, X, a, A.dist, cdose, r, lambda, :
Mat::elem(): index out of bounds
Calls: orthoDr_pdose -> pdose_direct_solver
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.6.2
Check: installed package size
Result: NOTE
installed size is 16.5Mb
sub-directories of 1Mb or more:
libs 16.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: examples
Result: ERROR
Running examples in ‘orthoDr-Ex.R’ failed
The error most likely occurred in:
> ### Name: orthoDr_pdose
> ### Title: orthoDr_pdose model
> ### Aliases: orthoDr_pdose
>
> ### ** Examples
>
> # generate some personalized dose scenario
>
> exampleset <- function(size,ncov){
+
+ X = matrix(runif(size*ncov,-1,1),ncol=ncov)
+ A = runif(size,0,2)
+
+ Edr = as.matrix(c(0.5,-0.5))
+
+ D_opt = X %*% Edr +1
+
+ mu = 2 + 0.5*(X %*% Edr) - 7*abs(D_opt-A)
+
+ R = rnorm(length(mu),mu,1)
+
+ R = R - min(R)
+
+ datainfo = list(X=X,A=A,R=R,D_opt=D_opt,mu=mu)
+ return(datainfo)
+ }
>
> # generate data
>
> set.seed(123)
> n = 150
> p = 2
> ndr =1
> train = exampleset(n,p)
> test = exampleset(500,p)
>
> # the direct learning method
> orthofit = orthoDr_pdose(train$X,train$A,train$R,ndr = ndr,lambda = 0.1,
+ method = "direct", K = sqrt(n),keep.data = TRUE,
+ maxitr = 150,verbose = FALSE)
OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
error: Mat::elem(): index out of bounds
Error in pdose_direct_solver(B.initial, X, a, A.dist, cdose, r, lambda, :
Mat::elem(): index out of bounds
Calls: orthoDr_pdose -> pdose_direct_solver
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.6.2
Check: examples
Result: ERROR
Running examples in ‘orthoDr-Ex.R’ failed
The error most likely occurred in:
> ### Name: orthoDr_pdose
> ### Title: orthoDr_pdose model
> ### Aliases: orthoDr_pdose
>
> ### ** Examples
>
> # generate some personalized dose scenario
>
> exampleset <- function(size,ncov){
+
+ X = matrix(runif(size*ncov,-1,1),ncol=ncov)
+ A = runif(size,0,2)
+
+ Edr = as.matrix(c(0.5,-0.5))
+
+ D_opt = X %*% Edr +1
+
+ mu = 2 + 0.5*(X %*% Edr) - 7*abs(D_opt-A)
+
+ R = rnorm(length(mu),mu,1)
+
+ R = R - min(R)
+
+ datainfo = list(X=X,A=A,R=R,D_opt=D_opt,mu=mu)
+ return(datainfo)
+ }
>
> # generate data
>
> set.seed(123)
> n = 150
> p = 2
> ndr =1
> train = exampleset(n,p)
> test = exampleset(500,p)
>
> # the direct learning method
> orthofit = orthoDr_pdose(train$X,train$A,train$R,ndr = ndr,lambda = 0.1,
+ method = "direct", K = sqrt(n),keep.data = TRUE,
+ maxitr = 150,verbose = FALSE)
error: Mat::elem(): index out of bounds
Error in pdose_direct_solver(B.initial, X, a, A.dist, cdose, r, lambda, :
Mat::elem(): index out of bounds
Calls: orthoDr_pdose -> pdose_direct_solver
Execution halted
Flavors: r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-patched-solaris-x86
Version: 0.6.2
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: dependencies in R code
Result: NOTE
No protocol specified
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: S3 generic/method consistency
Result: WARN
No protocol specified
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: replacement functions
Result: WARN
No protocol specified
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: foreign function calls
Result: NOTE
No protocol specified
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: R code for possible problems
Result: NOTE
No protocol specified
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: for missing documentation entries
Result: WARN
No protocol specified
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: for code/documentation mismatches
Result: WARN
No protocol specified
No protocol specified
No protocol specified
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.6.2
Check: Rd \usage sections
Result: NOTE
No protocol specified
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64