CRAN Package Check Results for Package GREP2

Last updated on 2019-09-06 07:49:56 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 27.84 299.65 327.49 ERROR
r-devel-linux-x86_64-fedora-clang 1.0.2 552.15 OK
r-devel-linux-x86_64-fedora-gcc 1.0.2 558.68 OK
r-devel-windows-ix86+x86_64 1.0.1 122.00 342.00 464.00 OK
r-patched-linux-x86_64 1.0.2 44.48 360.33 404.81 OK
r-patched-solaris-x86 1.0.2 669.00 OK
r-release-linux-x86_64 1.0.2 41.12 361.53 402.65 OK
r-release-windows-ix86+x86_64 1.0.2 109.00 316.00 425.00 OK
r-release-osx-x86_64 1.0.2 ERROR
r-oldrel-windows-ix86+x86_64 1.0.1 53.00 459.00 512.00 OK
r-oldrel-osx-x86_64 1.0.2 ERROR

Check Details

Version: 1.0.2
Check: examples
Result: ERROR
    Running examples in ‘GREP2-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: get_metadata
    > ### Title: Download metadata from GEO and SRA
    > ### Aliases: get_metadata
    >
    > ### ** Examples
    >
    >
    > get_metadata(geo_series_acc="GSE102170",destdir=tempdir(),
    + geo_only=TRUE,download_method="auto")
    Error: XML content does not seem to be XML: 'ChannelException at remote address: 130.14.22.147/130.14.22.147:28244 from service: #/consul/bethesda-prod/svc-http-ratecontrol-318-4147-app01. Remote Info: Upstream Address: Not Available, Upstream id: Not Available, Downstream Address: /130.14.22.147:28244, Downstream label: #/consul/bethesda-prod/svc-http-ratecontrol-318-4147-app01, Trace Id: 979a7e15ab3bb5e0.db12a987323eec2e<:979a7e15ab3bb5e0'
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: package dependencies
Result: ERROR
    Packages required but not available:
     'GEOquery', 'Biobase', 'tximport', 'EnsDb.Hsapiens.v86',
     'EnsDb.Rnorvegicus.v79', 'EnsDb.Mmusculus.v79', 'AnnotationDbi',
     'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Rn.eg.db', 'GenomicFeatures'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.0.2
Check: package dependencies
Result: ERROR
    Packages required but not available:
     ‘tximport’ ‘EnsDb.Hsapiens.v86’ ‘EnsDb.Rnorvegicus.v79’
     ‘EnsDb.Mmusculus.v79’ ‘org.Mm.eg.db’ ‘org.Rn.eg.db’ ‘GenomicFeatures’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64