Last updated on 2019-09-08 14:47:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.1 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 0.3.2 | 32.14 | 21.36 | 53.50 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.2 | 98.35 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.2 | 95.34 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.3.1 | 101.00 | 77.00 | 178.00 | OK | |
| r-patched-linux-x86_64 | 0.3.1 | 38.00 | 26.28 | 64.28 | OK | |
| r-patched-solaris-x86 | 0.3.2 | 88.90 | OK | |||
| r-release-linux-x86_64 | 0.3.2 | 35.19 | 26.46 | 61.65 | OK | |
| r-release-windows-ix86+x86_64 | 0.3.2 | 80.00 | 63.00 | 143.00 | OK | |
| r-release-osx-x86_64 | 0.3.2 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.3.2 | 90.00 | 78.00 | 168.00 | ERROR | |
| r-oldrel-osx-x86_64 | 0.3.2 | ERROR |
Version: 0.3.1
Check: tests
Result: ERROR
Running 'test_changepoints.R' [1s/1s]
Running the tests in 'tests/test_changepoints.R' failed.
Complete output:
> library(changepointsHD)
>
> set.seed(334)
>
> scp_data = read.table(system.file("extdata", "scp.txt", package="changepointsHD"))
> scp_data = as.matrix(scp_data)
>
> # prox gradient black-box method
> cov_est = cov(scp_data)
> init = solve(cov_est)
> res_map = prox_gradient_mapping(scp_data, init, 0.1, 0.99, 0.1, 100, 1e-20)
>
> # prox gradient black-box ll
> res_ll = prox_gradient_ll(scp_data, res_map, 0.1)
>
> prox_gradient_params=list()
> prox_gradient_params$update_w = 0.1
> prox_gradient_params$update_change = 0.99
> prox_gradient_params$regularizer = 0.1
> prox_gradient_params$max_iter = 1
> prox_gradient_params$tol = 1e-5
>
> prox_gradient_ll_params=list()
> prox_gradient_ll_params$regularizer = 0.1
>
> simulated_annealing_params = list()
> simulated_annealing_params$buff=10
>
> # test simulated annealing
> changepoints_mod = changepointsMod(bbmod=prox_gradient_mapping,
+ log_likelihood=prox_gradient_ll,
+ bbmod_params=prox_gradient_params,
+ ll_params=prox_gradient_ll_params,
+ part_values=list(init, init),
+ data=list(scp_data))
> changepoints_mod = simulated_annealing(changepoints_mod, buff=10)
[1] 14 10
[1] "UPDATE1"
[1] 86 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 60 10
[1] "UPDATE1"
[1] 40 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 23 10
[1] "UPDATE1"
[1] 77 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 22 10
[1] "UPDATE1"
[1] 78 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 17 10
[1] "UPDATE1"
[1] 83 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 16 10
[1] "UPDATE1"
[1] 84 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 18 10
[1] "UPDATE1"
[1] 82 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
> # two comparisons are done here because of differences in the R and R-devel samples
> stopifnot((changepoints_mod@changepoints != 18) | (changepoints_mod@changepoints != 56))
>
> # test brute force
> changepoints_mod@part_values = list(init, init)
> changepoints_mod = brute_force(changepoints_mod, buff=10)
[1] 10 10
[1] 90 10
[1] 11 10
[1] 89 10
[1] 12 10
[1] 88 10
[1] 13 10
[1] 87 10
[1] 14 10
[1] 86 10
[1] 15 10
[1] 85 10
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[1] 84 10
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[1] 83 10
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[1] 77 10
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[1] 87 10
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[1] 88 10
[1] 12 10
[1] 89 10
[1] 11 10
[1] 90 10
[1] 10 10
[1] 77 10
[1] 23 10
> stopifnot(changepoints_mod@changepoints == 77)
>
> # test rank one
> res_ro = rank_one(scp_data, init, update_w=0.1, regularizer=0.1)
> stopifnot(res_ro$tau == 56)
Error: res_ro$tau == 56 is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘test_changepoints.R’
Running the tests in ‘tests/test_changepoints.R’ failed.
Complete output:
> library(changepointsHD)
>
> RNGkind(sample.kind = "Rounding")
Warning message:
In RNGkind(sample.kind = "Rounding") : non-uniform 'Rounding' sampler used
> set.seed(334)
>
> scp_data = read.table(system.file("extdata", "scp.txt", package="changepointsHD"))
> scp_data = as.matrix(scp_data)
>
> # prox gradient black-box method
> cov_est = cov(scp_data)
> init = solve(cov_est)
> res_map = prox_gradient_mapping(scp_data, init, 0.1, 0.99, 0.1, 100, 1e-20)
>
> # prox gradient black-box ll
> res_ll = prox_gradient_ll(scp_data, res_map, 0.1)
>
> prox_gradient_params=list()
> prox_gradient_params$update_w = 0.1
> prox_gradient_params$update_change = 0.99
> prox_gradient_params$regularizer = 0.1
> prox_gradient_params$max_iter = 1
> prox_gradient_params$tol = 1e-5
>
> prox_gradient_ll_params=list()
> prox_gradient_ll_params$regularizer = 0.1
>
> simulated_annealing_params = list()
> simulated_annealing_params$buff=10
>
> # test simulated annealing
> changepoints_mod = changepointsMod(bbmod=prox_gradient_mapping,
+ log_likelihood=prox_gradient_ll,
+ bbmod_params=prox_gradient_params,
+ ll_params=prox_gradient_ll_params,
+ part_values=list(init, init),
+ data=list(scp_data))
> changepoints_mod = simulated_annealing(changepoints_mod, buff=10)
[1] 89 10
[1] "UPDATE1"
[1] 11 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 17 10
[1] "UPDATE1"
[1] 83 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 61 10
[1] "UPDATE1"
[1] 39 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 75 10
[1] "UPDATE1"
[1] 25 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 13 10
[1] "UPDATE1"
[1] 87 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 55 10
[1] "UPDATE1"
[1] 45 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 54 10
[1] "UPDATE1"
[1] 46 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 16 10
[1] "UPDATE1"
[1] 84 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 17 10
[1] "UPDATE1"
[1] 83 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 59 10
[1] "UPDATE1"
[1] 41 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 50 10
[1] "UPDATE1"
[1] 50 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 55 10
[1] "UPDATE1"
[1] 45 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
[1] 56 10
[1] "UPDATE1"
[1] 44 10
[1] "UPDATE2"
[1] "LL1"
[1] "LL2"
> # two comparisons are done here because of differences in the R and R-devel samples
> stopifnot((changepoints_mod@changepoints != 18) | (changepoints_mod@changepoints != 56))
>
> # test brute force
> changepoints_mod@part_values = list(init, init)
> changepoints_mod = brute_force(changepoints_mod, buff=10)
[1] 10 10
[1] 90 10
[1] 11 10
[1] 89 10
[1] 12 10
[1] 88 10
[1] 13 10
[1] 87 10
[1] 14 10
[1] 86 10
[1] 15 10
[1] 85 10
[1] 16 10
[1] 84 10
[1] 17 10
[1] 83 10
[1] 18 10
[1] 82 10
[1] 19 10
[1] 81 10
[1] 20 10
[1] 80 10
[1] 21 10
[1] 79 10
[1] 22 10
[1] 78 10
[1] 23 10
[1] 77 10
[1] 24 10
[1] 76 10
[1] 25 10
[1] 75 10
[1] 26 10
[1] 74 10
[1] 27 10
[1] 73 10
[1] 28 10
[1] 72 10
[1] 29 10
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[1] 62 10
[1] 39 10
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[1] 59 10
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[1] 58 10
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[1] 57 10
[1] 44 10
[1] 56 10
[1] 45 10
[1] 55 10
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[1] 54 10
[1] 47 10
[1] 53 10
[1] 48 10
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[1] 51 10
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[1] 84 10
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[1] 86 10
[1] 14 10
[1] 87 10
[1] 13 10
[1] 88 10
[1] 12 10
[1] 89 10
[1] 11 10
[1] 90 10
[1] 10 10
[1] 77 10
[1] 23 10
> stopifnot(changepoints_mod@changepoints == 77)
>
> # test rank one
> res_ro = rank_one(scp_data, init, update_w=0.1, regularizer=0.1)
> stopifnot(res_ro$tau == 56)
Error: res_ro$tau == 56 is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘test_changepoints.R’ [1s/1s]
Running the tests in ‘tests/test_changepoints.R’ failed.
Last 13 lines of output:
[1] 88 10
[1] 12 10
[1] 89 10
[1] 11 10
[1] 90 10
[1] 10 10
[1] 77 10
[1] 23 10
> stopifnot(changepoints_mod@changepoints == 77)
>
> # test rank one
> res_ro = rank_one(scp_data, init, update_w=0.1, regularizer=0.1)
> stopifnot(res_ro$tau == 56)
Error: res_ro$tau == 56 is not TRUE
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.3.2
Check: running tests for arch ‘i386’
Result: ERROR
Running 'test_changepoints.R' [1s]
Running the tests in 'tests/test_changepoints.R' failed.
Complete output:
> library(changepointsHD)
>
> RNGkind(sample.kind = "Rounding")
Error in RNGkind(sample.kind = "Rounding") :
unused argument (sample.kind = "Rounding")
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.3.2
Check: running tests for arch ‘x64’
Result: ERROR
Running 'test_changepoints.R' [1s]
Running the tests in 'tests/test_changepoints.R' failed.
Complete output:
> library(changepointsHD)
>
> RNGkind(sample.kind = "Rounding")
Error in RNGkind(sample.kind = "Rounding") :
unused argument (sample.kind = "Rounding")
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.3.2
Check: tests
Result: ERROR
Running ‘test_changepoints.R’ [0s/0s]
Running the tests in ‘tests/test_changepoints.R’ failed.
Complete output:
> library(changepointsHD)
>
> RNGkind(sample.kind = "Rounding")
Error in RNGkind(sample.kind = "Rounding") :
unused argument (sample.kind = "Rounding")
Execution halted
Flavor: r-oldrel-osx-x86_64