CRAN Package Check Results for Package Rphylopars

Last updated on 2019-10-01 06:48:42 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.9 53.18 94.38 147.56 WARN
r-devel-linux-x86_64-debian-gcc 0.2.9 45.71 73.06 118.77 WARN
r-devel-linux-x86_64-fedora-clang 0.2.9 197.55 WARN
r-devel-linux-x86_64-fedora-gcc 0.2.9 194.20 WARN
r-devel-windows-ix86+x86_64 0.2.9 134.00 220.00 354.00 WARN
r-patched-linux-x86_64 0.2.9 50.27 90.32 140.59 OK
r-patched-solaris-x86 0.2.9 235.00 OK
r-release-linux-x86_64 0.2.9 47.64 91.32 138.96 OK
r-release-windows-ix86+x86_64 0.2.9 148.00 214.00 362.00 OK
r-release-osx-x86_64 0.2.9 NOTE
r-oldrel-windows-ix86+x86_64 0.2.9 132.00 236.00 368.00 OK
r-oldrel-osx-x86_64 0.2.9 OK

Check Details

Version: 0.2.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     phylopars_rcpp.cpp:125:11: warning: 'set_stream_err2' is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:128:12: warning: 'inv<arma::Mat<double> >' is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:144:11: warning: 'set_stream_err2' is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:146:14: warning: 'solve<arma::Mat<double>, arma::Mat<double> >' is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:179:11: warning: 'set_stream_err2' is deprecated [-Wdeprecated-declarations]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang

Version: 0.2.9
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'data_path.txt' 'tree_path.new'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     phylopars_rcpp.cpp:125:11: warning: ‘void arma::set_stream_err2(std::ostream&)’ is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:125:37: warning: ‘void arma::set_stream_err2(std::ostream&)’ is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:128:23: warning: ‘typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Op<T1, arma::op_inv> >::result arma::inv(const arma::Base<typename T1::elem_type, T1>&, const char*) [with T1 = arma::Mat<double>; typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Op<T1, arma::op_inv> >::result = const arma::Op<arma::Mat<double>, arma::op_inv>; typename T1::elem_type = double]’ is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:144:11: warning: ‘void arma::set_stream_err2(std::ostream&)’ is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:144:37: warning: ‘void arma::set_stream_err2(std::ostream&)’ is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:146:29: warning: ‘typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Glue<T1, T2, arma::glue_solve_gen> >::result arma::solve(const arma::Base<typename T1::elem_type, T1>&, const arma::Base<typename T1::elem_type, T2>&, const char*) [with T1 = arma::Mat<double>; T2 = arma::Mat<double>; typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Glue<T1, T2, arma::glue_solve_gen> >::result = const arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_solve_gen>; typename T1::elem_type = double; typename T1::elem_type = double]’ is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:179:11: warning: ‘void arma::set_stream_err2(std::ostream&)’ is deprecated [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:179:37: warning: ‘void arma::set_stream_err2(std::ostream&)’ is deprecated [-Wdeprecated-declarations]
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.9
Check: installed package size
Result: NOTE
     installed size is 5.1Mb
     sub-directories of 1Mb or more:
     libs 4.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64

Version: 0.2.9
Check: compiled code
Result: NOTE
    File ‘Rphylopars/libs/Rphylopars.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     phylopars_rcpp.cpp:125:11: warning: 'void arma::set_stream_err2(std::ostream&)' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/debug.hpp:101) [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:125:37: warning: 'void arma::set_stream_err2(std::ostream&)' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/debug.hpp:101) [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:128:23: warning: 'typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Op<T1, arma::op_inv> >::result arma::inv(const arma::Base<typename T1::elem_type, T1>&, const char*) [with T1 = arma::Mat<double>; typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Op<T1, arma::op_inv> >::result = const arma::Op<arma::Mat<double>, arma::op_inv>; typename T1::elem_type = double]' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/fn_inv.hpp:63) [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:144:11: warning: 'void arma::set_stream_err2(std::ostream&)' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/debug.hpp:101) [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:144:37: warning: 'void arma::set_stream_err2(std::ostream&)' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/debug.hpp:101) [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:146:29: warning: 'typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Glue<T1, T2, arma::glue_solve_gen> >::result arma::solve(const arma::Base<typename T1::elem_type, T1>&, const arma::Base<typename T1::elem_type, T2>&, const char*) [with T1 = arma::Mat<double>; T2 = arma::Mat<double>; typename arma::enable_if2<arma::is_supported_blas_type<typename T1::elem_type>::value, const arma::Glue<T1, T2, arma::glue_solve_gen> >::result = const arma::Glue<arma::Mat<double>, arma::Mat<double>, arma::glue_solve_gen>; typename T1::elem_type = double; typename T1::elem_type = double]' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/fn_solve.hpp:70) [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:179:11: warning: 'void arma::set_stream_err2(std::ostream&)' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/debug.hpp:101) [-Wdeprecated-declarations]
     phylopars_rcpp.cpp:179:37: warning: 'void arma::set_stream_err2(std::ostream&)' is deprecated (declared at d:/RCompile/CRANpkg/lib/3.7/RcppArmadillo/include/armadillo_bits/debug.hpp:101) [-Wdeprecated-declarations]
Flavor: r-devel-windows-ix86+x86_64