Last updated on 2019-10-10 18:49:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.3 | 1.89 | 19.48 | 21.37 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.3 | 1.41 | 15.63 | 17.04 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1.3 | 29.97 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.3 | 29.01 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1.3 | 4.00 | 40.00 | 44.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.3 | 1.59 | 19.61 | 21.20 | NOTE | |
| r-patched-solaris-x86 | 1.1.3 | 42.10 | NOTE | |||
| r-release-linux-x86_64 | 1.1.3 | 1.45 | 19.79 | 21.24 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.1.3 | 8.00 | 31.00 | 39.00 | ERROR | |
| r-release-osx-x86_64 | 1.1.3 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.3 | 3.00 | 30.00 | 33.00 | ERROR | |
| r-oldrel-osx-x86_64 | 1.1.3 | NOTE |
Version: 1.1.3
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.3
Check: R code for possible problems
Result: NOTE
popRangeSim: no visible global function definition for 'write.table'
Undefined global functions or variables:
write.table
Consider adding
importFrom("utils", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.3
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'outFile1.ADMIXTURE.MAP.gen50' 'outFile1.ADMIXTURE.PED.gen50'
'outFile1.results.gen50'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1.3
Check: examples
Result: ERROR
Running examples in 'popRange-Ex.R' failed
The error most likely occurred in:
> ### Name: popRangeSim
> ### Title: popRangeSim
> ### Aliases: popRangeSim
>
> ### ** Examples
>
> ## Example: In this scenario, we are simulating a 3x3 grid of populations for 50
> ## generations. Each population starts with 100 diploid individuals. Each individual
> ## has a 0.01 probability of migrating away from their populations. There are 100
> ## SNPs that all have a starting frequency of 0.5, and the program outputs the standard
> ## "results" file, as well as a PLINK file.
>
> ## Commands
>
> mat = matrix(1,nrow=3,ncol=3)
> popRangeSim(world = mat, popSize = 100, diploid = TRUE, nGens = 50,
+ mig = 0.01, SNP_model = 0, nSNPs = 100, SNPs_starting_freq = 0.5,
+ outfile= "outFile1", PLINK=TRUE)
Error in find_python_cmd(minimum_version = minimum_version, maximum_version = maximum_version, :
Couldn't find a sufficient Python binary. If you haven't installed the Python dependency yet please do so. If you have but it isn't on the system path (as is default on Windows) please add it to path or set options('python_cmd'='/path/to/binary') or set the PYTHON, PYTHON2, or PYTHON3 environmental variables. Python must be at least version 2.7 Python must be at most version 3.4 Python must have access to the modules: numpy
[1] "Could not find an acceptable version of python with numpy installed. This should be able to locate python \n anywhere on your computer, but perhaps try adding python to your PATH if you think this message is an error."
Error in popRangeSim(world = mat, popSize = 100, diploid = TRUE, nGens = 50, :
Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64