Last updated on 2019-10-21 13:47:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 56.61 | 127.15 | 183.76 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 45.84 | 99.76 | 145.60 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 222.05 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 231.21 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.0.0 | 104.00 | 202.00 | 306.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 48.77 | 120.60 | 169.37 | WARN | |
| r-patched-solaris-x86 | 1.0.0 | 278.60 | WARN | |||
| r-release-linux-x86_64 | 1.0.0 | 49.53 | 123.32 | 172.85 | WARN | |
| r-release-windows-ix86+x86_64 | 1.0.0 | 142.00 | 269.00 | 411.00 | OK | |
| r-release-osx-x86_64 | 1.0.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.0 | 94.00 | 185.00 | 279.00 | OK | |
| r-oldrel-osx-x86_64 | 1.0.0 | ERROR |
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'IntroBiofiles.Rnw' using knitr
Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'IntroBiofiles.tex' failed.
LaTeX errors:
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Argument of \Hy@scantitle has an extra }.
<inserted text>
\par
l.166 \renewcommand{\title}
[1]{\def\@bioctitle{#1}\@oldtitle{#1}}
! Paragraph ended before \Hy@scantitle was complete.
<to be read again>
\par
l.166 \renewcommand{\title}
[1]{\def\@bioctitle{#1}\@oldtitle{#1}}
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Illegal parameter number in definition of \@.
<to be read again>
1
l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
}\@oldtitle{#1}}
! Use of \@ doesn't match its definition.
l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
ldtitle{#1}}
If you say, e.g., `\def\a1{...}', then you must always
put `1' after `\a', since control sequence names are
! You can't use `macro parameter character #' in horizontal mode.
l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
1}}
Sorry, but I'm not programmed to handle this case;
I'll just pretend that you didn't ask for it.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Argument of \etb@resrvda has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \etb@resrvda was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Undefined control sequence.
\\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
\undef \etb@resrvda \@firs...
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Argument of \@firstoftwo has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \@firstoftwo was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Argument of \@secondoftwo has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \@secondoftwo was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Missing number, treated as zero.
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
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\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to
--- failed re-building 'IntroBiofiles.Rnw'
SUMMARY: processing the following file failed:
'IntroBiofiles.Rnw'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-solaris-x86
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘IntroBiofiles.Rnw’ using knitr
Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
Running ‘texi2dvi’ on ‘IntroBiofiles.tex’ failed.
LaTeX errors:
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Argument of \Hy@scantitle has an extra }.
<inserted text>
\par
l.166 \renewcommand{\title}
[1]{\def\@bioctitle{#1}\@oldtitle{#1}}
! Paragraph ended before \Hy@scantitle was complete.
<to be read again>
\par
l.166 \renewcommand{\title}
[1]{\def\@bioctitle{#1}\@oldtitle{#1}}
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Illegal parameter number in definition of \@.
<to be read again>
1
l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
}\@oldtitle{#1}}
! Use of \@ doesn't match its definition.
l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
ldtitle{#1}}
If you say, e.g., `\def\a1{...}', then you must always
put `1' after `\a', since control sequence names are
! You can't use `macro parameter character #' in horizontal mode.
l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
1}}
Sorry, but I'm not programmed to handle this case;
I'll just pretend that you didn't ask for it.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Argument of \etb@resrvda has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \etb@resrvda was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Undefined control sequence.
\\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
\undef \etb@resrvda \@firs...
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Argument of \@firstoftwo has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \@firstoftwo was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Argument of \@secondoftwo has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \@secondoftwo was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Missing number, treated as zero.
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as ze
--- failed re-building ‘IntroBiofiles.Rnw’
SUMMARY: processing the following file failed:
‘IntroBiofiles.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘IntroBiofiles.Rnw’ using knitr
Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'IntroBiofiles.tex' failed.
LaTeX errors:
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Argument of \Hy@scantitle has an extra }.
<inserted text>
\par
l.166 \renewcommand{\title}
[1]{\def\@bioctitle{#1}\@oldtitle{#1}}
! Paragraph ended before \Hy@scantitle was complete.
<to be read again>
\par
l.166 \renewcommand{\title}
[1]{\def\@bioctitle{#1}\@oldtitle{#1}}
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Illegal parameter number in definition of \@.
<to be read again>
1
l.166 \renewcommand{\title}[1]{\def\@bioctitle{#1
}\@oldtitle{#1}}
! Use of \@ doesn't match its definition.
l.166 ...command{\title}[1]{\def\@bioctitle{#1}\@o
ldtitle{#1}}
If you say, e.g., `\def\a1{...}', then you must always
put `1' after `\a', since control sequence names are
! You can't use `macro parameter character #' in horizontal mode.
l.166 ...title}[1]{\def\@bioctitle{#1}\@oldtitle{#
1}}
Sorry, but I'm not programmed to handle this case;
I'll just pretend that you didn't ask for it.
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Argument of \etb@resrvda has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \etb@resrvda was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! LaTeX Error: Missing \begin{document}.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
...
! Undefined control sequence.
\\etb@patchcmd ...etb@resrvda \let #2\etb@resrvda
\undef \etb@resrvda \@firs...
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Argument of \@firstoftwo has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \@firstoftwo was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Argument of \@secondoftwo has an extra }.
<inserted text>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Paragraph ended before \@secondoftwo was complete.
<to be read again>
\par
l.210 \patchcmd{\PN@parnote@real}{\thinspace}{}
{}{}
! Missing number, treated as zero.
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.71 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.75 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.75 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.82 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.87 \end{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.87 \end{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Illegal unit of measure (pt inserted).
<to be read again>
\@
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Undefined control sequence.
<argument> ... \hsize -\width \@totalleftmargin\z
@ \linewidth \hsize \advan...
l.91 ...0.941, 0.941}\color{fgcolor}\begin{kframe}
! Missing number, treated as zero.
<to
--- failed re-building ‘IntroBiofiles.Rnw’
SUMMARY: processing the following file failed:
‘IntroBiofiles.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BiocStyle’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘biofiles-Ex.R’ failed
The error most likely occurred in:
> ### Name: end
> ### Title: Get or set the end position of genomic features
> ### Aliases: end end<- end,gbLocation-method end<-,gbLocation-method
> ### end,gbFeature-method end<-,gbFeature-method end,gbFeatureTable-method
> ### end<-,gbFeatureTable-method end,gbRecord-method
> ### end,gbRecordList-method
>
> ### ** Examples
>
> load(system.file("extdata", "marine_metagenome.rda", package = "biofiles"))
>
> ## end
> end(x)
[1] 1658 452 452 757 757 734 734 812 1658 1658
> cds <- x["CDS"]
> end(cds)
[1] 452 757 734 1658
>
> ## `end<-`
> end(cds) <- 1000
> end(cds)
[1] 1000 1000 1000 1000
> ranges(cds)
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called ‘GenomeInfoDbData’
Calls: ranges ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [6s/6s]
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
11: withRestarts(stop(cond), retry_loadNamespace = function() NULL)
12: withOneRestart(expr, restarts[[1L]])
13: doWithOneRestart(return(expr), restart)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 263 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 6 ]
1. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#6)
2. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#9)
3. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#13)
4. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#14)
5. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#17)
6. Error: Ranges work for gbFeatures (@test-07-gbRecord.r#51)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘IntroBiofiles.Rnw’ using knitr
Quitting from lines 10-11 (IntroBiofiles.Rnw)
Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
there is no package called 'BiocStyle'
--- failed re-building ‘IntroBiofiles.Rnw’
SUMMARY: processing the following file failed:
‘IntroBiofiles.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [9s/13s]
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
── 5. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#17)
`gbLocation("123^125")` threw an error with unexpected message.
Expected match: "Inadmissible range"
Actual message: "c++ exception (unknown reason)"
══ testthat results ═══════════════════════════════════════════════════════════
OK: 267 SKIPPED: 1 FAILED: 5
1. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#6)
2. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#9)
3. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#13)
4. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#14)
5. Failure: Location descriptors parse correctly (@test-01-gbLocation.r#17)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-osx-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Quitting from lines 10-11 (IntroBiofiles.Rnw)
Error: processing vignette 'IntroBiofiles.Rnw' failed with diagnostics:
there is no package called 'BiocStyle'
Execution halted
Flavor: r-oldrel-osx-x86_64