CRAN Package Check Results for Package mht

Last updated on 2019-11-25 05:47:21 CET.

Check Details

Version: 3.1.2
Check: whether the package can be unloaded cleanly
Result: WARN
    Error: package or namespace load failed for 'mht':
     .onAttach failed in attachNamespace() for 'mht', details:
     call: packageDescription("mht")
     error: could not find function "packageDescription"
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 3.1.2
Check: dependencies in R code
Result: NOTE
    Error: package or namespace load failed for 'mht':
     .onAttach failed in attachNamespace() for 'mht', details:
     call: packageDescription("mht")
     error: could not find function "packageDescription"
    Call sequence:
    6: stop(msg, call. = FALSE, domain = NA)
    5: value[[3L]](cond)
    4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    3: tryCatchList(expr, classes, parentenv, handlers)
    2: tryCatch({
     attr(package, "LibPath") <- which.lib.loc
     ns <- loadNamespace(package, lib.loc)
     env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
     }, error = function(e) {
     P <- if (!is.null(cc <- conditionCall(e)))
     paste(" in", deparse(cc)[1L])
     else ""
     msg <- gettextf("package or namespace load failed for %s%s:\n %s",
     sQuote(package), P, conditionMessage(e))
     if (logical.return)
     message(paste("Error:", msg), domain = NA)
     else stop(msg, call. = FALSE, domain = NA)
     })
    1: library(package, lib.loc = lib.l
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64

Version: 3.1.2
Check: R code for possible problems
Result: NOTE
    .onAttach: no visible global function definition for
     'packageDescription'
    bolasso: no visible global function definition for 'lm'
    bolasso: no visible global function definition for 'runif'
    mht: no visible global function definition for 'lm'
    mht.order: no visible global function definition for 'lm'
    mht.order: no visible global function definition for 'qf'
    mht.order: no visible global function definition for 'qchisq'
    order.variables: no visible global function definition for 'lm'
    plot.bolasso: no visible global function definition for 'topo.colors'
    plot.bolasso: no visible global function definition for 'plot'
    plot.bolasso: no visible global function definition for 'lines'
    plot.mht: no visible global function definition for 'par'
    plot.mht: no visible global function definition for 'plot'
    plot.mht: no visible global function definition for 'abline'
    plot.mht: no visible global function definition for 'qqnorm'
    plot.mht: no visible global function definition for 'var'
    plot.mht: no visible global function definition for 'barplot'
    plot.mht.order: no visible global function definition for 'par'
    plot.mht.order: no visible global function definition for 'plot'
    plot.mht.order: no visible global function definition for 'abline'
    plot.mht.order: no visible global function definition for 'qqnorm'
    plot.mht.order: no visible global function definition for 'var'
    plot.mht.order: no visible global function definition for 'barplot'
    predict.mht: no visible global function definition for 'lm'
    predict.mht: no visible global function definition for 'predict'
    predict.mht.order: no visible global function definition for 'lm'
    predict.mht.order: no visible global function definition for 'predict'
    quantil_ord: no visible global function definition for 'rnorm'
    quantil_ord: no visible global function definition for 'pf'
    quantil_ord: no visible global function definition for 'pchisq'
    quantil_ord: no visible global function definition for 'quantile'
    quantilemht: no visible global function definition for 'rnorm'
    quantilemht: no visible global function definition for 'quantile'
    refit.mht: no visible global function definition for 'lm'
    refit.mht.order: no visible global function definition for 'lm'
    refit.mht.order: no visible global function definition for 'qf'
    refit.mht.order: no visible global function definition for 'qchisq'
    Undefined global functions or variables:
     abline barplot lines lm packageDescription par pchisq pf plot predict
     qchisq qf qqnorm quantile rnorm runif topo.colors var
    Consider adding
     importFrom("grDevices", "topo.colors")
     importFrom("graphics", "abline", "barplot", "lines", "par", "plot")
     importFrom("stats", "lm", "pchisq", "pf", "predict", "qchisq", "qf",
     "qqnorm", "quantile", "rnorm", "runif", "var")
     importFrom("utils", "packageDescription")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.1.2
Check: dependencies in R code
Result: NOTE
    Error: package or namespace load failed for ‘mht’:
     .onAttach failed in attachNamespace() for 'mht', details:
     call: packageDescription("mht")
     error: could not find function "packageDescription"
    Call sequence:
    6: stop(msg, call. = FALSE, domain = NA)
    5: value[[3L]](cond)
    4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    3: tryCatchList(expr, classes, parentenv, handlers)
    2: tryCatch({
     attr(package, "LibPath") <- which.lib.loc
     ns <- loadNamespace(package, lib.loc)
     env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
     }, error = function(e) {
     P <- if (!is.null(cc <- conditionCall(e)))
     paste(" in", deparse(cc)[1L])
     else ""
     msg <- gettextf("package or namespace load failed for %s%s:\n %s",
     sQuote(package), P, conditionMessage(e))
     if (logical.return)
     message(paste("Error:", msg), domain = NA)
     else stop(msg, call. = FALSE, domain = NA)
     })
    1: library(package, lib.loc = l
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 3.1.2
Check: compiled code
Result: NOTE
    File ‘mht/libs/mht.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.1.2
Check: loading without being on the library search path
Result: WARN
    Loading required package: glmnet
    Loading required package: Matrix
    Loaded glmnet 3.0-1
    
    Error: package or namespace load failed for 'mht':
     .onAttach failed in attachNamespace() for 'mht', details:
     call: packageDescription("mht")
     error: could not find function "packageDescription"
    Execution halted
    
    It looks like this package has a loading problem when not on .libPaths:
    see the messages for details.
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-release-windows-ix86+x86_64