Last updated on 2019-12-21 10:48:01 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3-1 | 11.56 | 132.14 | 143.70 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3-1 | 9.86 | 102.45 | 112.31 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3-1 | 217.82 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3-1 | 227.54 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.3-1 | 32.00 | 162.00 | 194.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.3-1 | 29.00 | 165.00 | 194.00 | OK | |
| r-patched-linux-x86_64 | 1.3-1 | OK | ||||
| r-patched-solaris-x86 | 1.3-1 | 288.40 | OK | |||
| r-release-linux-x86_64 | 1.3-1 | 9.28 | 157.15 | 166.43 | OK | |
| r-release-windows-ix86+x86_64 | 1.3-1 | 20.00 | 223.00 | 243.00 | OK | |
| r-release-osx-x86_64 | 1.3-1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3-1 | 13.00 | 223.00 | 236.00 | OK | |
| r-oldrel-osx-x86_64 | 1.3-1 | OK |
Version: 1.3-1
Check: examples
Result: ERROR
Running examples in 'spup-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: defineMUM
> ### Title: Define Mulivariate Uncertainty Model
> ### Aliases: defineMUM
>
> ### ** Examples
>
>
> set.seed(12345)
>
> data(OC, OC_sd, TN, TN_sd)
> OC_crm <- makeCRM(acf0 = 0.6, range = 5000, model = "Sph")
> OC_UM <- defineUM(TRUE, distribution = "norm", distr_param = c(OC, OC_sd), crm = OC_crm, id = "OC")
> class(OC_UM)
[1] "MarginalNumericSpatial"
> TN_crm <- makeCRM(acf0 = 0.4, range = 5000, model = "Sph")
> TN_UM <- defineUM(TRUE, distribution = "norm", distr_param = c(TN, TN_sd), crm = TN_crm, id = "TN")
> class(TN_UM)
[1] "MarginalNumericSpatial"
>
> soil_prop <- list(OC_UM,TN_UM)
> mySpatialMUM <- defineMUM(soil_prop, matrix(c(1,0.7,0.7,1), nrow=2, ncol=2))
Error in defineMUM(soil_prop, matrix(c(1, 0.7, 0.7, 1), nrow = 2, ncol = 2)) :
class(cormatrix) == "matrix" are not all TRUE
Calls: defineMUM -> stopifnot
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.3-1
Check: tests
Result: ERROR
Running 'run_testthat.R' [5s/5s]
Running 'test_defineMUM.R' [3s/4s]
Running 'test_genSample_jointSPDF.R' [3s/4s]
Running 'test_genSample_marginalRaster.R' [6s/7s]
Running 'test_genSample_marginalSPDF.R' [4s/5s]
Running 'test_makeCRM.R' [3s/4s]
Running 'test_propagate_raster.R' [5s/6s]
Running 'test_render.R' [3s/4s]
Running the tests in 'tests/test_defineMUM.R' failed.
Complete output:
> # test -- defineMUM()
>
> library(spup)
> library(gstat)
> library(sp)
>
> # test with data from gstat
> data(meuse)
> # make spatial
> coordinates(meuse) = ~x+y
> # make separate spatial grid data frames for mean and sd
> m1 <- meuse["zinc"]
> m1.sd <- m1
> m1.sd[[1]] <- m1.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> m2 <- meuse["lead"]
> m2.sd <- m2
> m2.sd[[1]] <- m2.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> # define srm and UM and sample
> crm1 <- makeCRM(acf0 = 0.6, range = 100, model = "Sph")
> crm2 <- makeCRM(acf0 = 0.7, range = 100, model = "Exp")
> UM1 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m1, m1.sd), crm = crm1)
> UM2 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m2, m2.sd), crm = crm2)
> cormat <- matrix(c(1,0.7,0.7,1), nrow = 2, ncol = 2)
> JointUM <- defineMUM(list(UM1,UM2), cormatrix = cormat)
Error in defineMUM(list(UM1, UM2), cormatrix = cormat) :
class(cormatrix) == "matrix" are not all TRUE
Calls: defineMUM -> stopifnot
Execution halted
Running the tests in 'tests/test_genSample_jointSPDF.R' failed.
Complete output:
> # test -- defineMUM()
>
> library(spup)
> library(gstat)
> library(sp)
>
> # test with data from gstat
> data(meuse)
> # make spatial
> coordinates(meuse) = ~x+y
> # make separate spatial grid data frames for mean and sd
> m1 <- meuse["zinc"]
> m1.sd <- m1
> m1.sd[[1]] <- m1.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> m2 <- meuse["lead"]
> m2.sd <- m2
> m2.sd[[1]] <- m2.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> # define srm and UM and sample
> crm1 <- makeCRM(acf0 = 0.6, range = 200, model = "Exp")
> crm2 <- makeCRM(acf0 = 0.7, range = 200, model = "Exp")
> UM1 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m1, m1.sd), crm = crm1, id = "zinc")
> UM2 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m2, m2.sd), crm = crm2, id = "lead")
> cormat <- matrix(c(1,0.7,0.7,1), nrow = 2, ncol = 2)
> JointUM <- defineMUM(list(UM1,UM2), cormatrix = cormat)
Error in defineMUM(list(UM1, UM2), cormatrix = cormat) :
class(cormatrix) == "matrix" are not all TRUE
Calls: defineMUM -> stopifnot
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3-1
Check: tests
Result: ERROR
Running ‘run_testthat.R’ [4s/7s]
Running ‘test_defineMUM.R’ [3s/4s]
Running ‘test_genSample_jointSPDF.R’ [3s/4s]
Running ‘test_genSample_marginalRaster.R’ [4s/7s]
Running ‘test_genSample_marginalSPDF.R’ [3s/6s]
Running ‘test_makeCRM.R’ [3s/4s]
Running ‘test_propagate_raster.R’ [4s/7s]
Running ‘test_render.R’ [3s/4s]
Running the tests in ‘tests/test_defineMUM.R’ failed.
Complete output:
> # test -- defineMUM()
>
> library(spup)
> library(gstat)
> library(sp)
>
> # test with data from gstat
> data(meuse)
> # make spatial
> coordinates(meuse) = ~x+y
> # make separate spatial grid data frames for mean and sd
> m1 <- meuse["zinc"]
> m1.sd <- m1
> m1.sd[[1]] <- m1.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> m2 <- meuse["lead"]
> m2.sd <- m2
> m2.sd[[1]] <- m2.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> # define srm and UM and sample
> crm1 <- makeCRM(acf0 = 0.6, range = 100, model = "Sph")
> crm2 <- makeCRM(acf0 = 0.7, range = 100, model = "Exp")
> UM1 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m1, m1.sd), crm = crm1)
> UM2 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m2, m2.sd), crm = crm2)
> cormat <- matrix(c(1,0.7,0.7,1), nrow = 2, ncol = 2)
> JointUM <- defineMUM(list(UM1,UM2), cormatrix = cormat)
Error in defineMUM(list(UM1, UM2), cormatrix = cormat) :
class(cormatrix) == "matrix" are not all TRUE
Calls: defineMUM -> stopifnot
Execution halted
Running the tests in ‘tests/test_genSample_jointSPDF.R’ failed.
Complete output:
> # test -- defineMUM()
>
> library(spup)
> library(gstat)
> library(sp)
>
> # test with data from gstat
> data(meuse)
> # make spatial
> coordinates(meuse) = ~x+y
> # make separate spatial grid data frames for mean and sd
> m1 <- meuse["zinc"]
> m1.sd <- m1
> m1.sd[[1]] <- m1.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> m2 <- meuse["lead"]
> m2.sd <- m2
> m2.sd[[1]] <- m2.sd[[1]] * rnorm(n = 155, mean = 1, sd = 0.5)
> # define srm and UM and sample
> crm1 <- makeCRM(acf0 = 0.6, range = 200, model = "Exp")
> crm2 <- makeCRM(acf0 = 0.7, range = 200, model = "Exp")
> UM1 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m1, m1.sd), crm = crm1, id = "zinc")
> UM2 <- defineUM(uncertain = TRUE, distribution = "norm",
+ distr_param = c(m2, m2.sd), crm = crm2, id = "lead")
> cormat <- matrix(c(1,0.7,0.7,1), nrow = 2, ncol = 2)
> JointUM <- defineMUM(list(UM1,UM2), cormatrix = cormat)
Error in defineMUM(list(UM1, UM2), cormatrix = cormat) :
class(cormatrix) == "matrix" are not all TRUE
Calls: defineMUM -> stopifnot
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc