Last updated on 2020-01-20 08:55:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 1.5.4 | 193.49 | WARN | |||
| r-patched-solaris-x86 | 1.5.4 | 322.10 | ERROR | |||
| r-release-osx-x86_64 | 1.5.3 | OK | ||||
| r-oldrel-osx-x86_64 | 1.5.3 | OK |
Version: 1.5.4
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘BAS-vignette.Rmd’ using rmarkdown
Quitting from lines 463-466 (BAS-vignette.Rmd)
Error: processing vignette 'BAS-vignette.Rmd' failed with diagnostics:
cannot open the connection to 'https://stat.duke.edu/sites/stat.duke.edu/files/climate.dat'
--- failed re-building ‘BAS-vignette.Rmd’
SUMMARY: processing the following file failed:
‘BAS-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [31s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BAS)
>
> test_check("BAS")
── 1. Failure: herdity and BAS (@test-bas-glm.R#418) ──────────────────────────
pima_BAS$probne0 not equal to pima_BAS_no$probne0.
6/7 mismatches (average diff: 0.0696)
[2] 0.11013 - 0.1136 == -3.47e-03
[3] 1.00000 - 1.0000 == -2.54e-06
[4] 0.63062 - 0.8284 == -1.98e-01
[5] 0.02193 - 0.0220 == -1.03e-04
[6] 0.00771 - 0.0101 == -2.42e-03
[7] 0.31878 - 0.1051 == 2.14e-01
── 2. Failure: heredity and bas.lm (@test-bas-lm.R#271) ───────────────────────
pima_BAS$probne0 not equal to pima_BAS_no$probne0.
6/7 mismatches (average diff: 0.0858)
[2] 0.10180 - 0.10419 == -2.39e-03
[3] 1.00000 - 1.00000 == -9.32e-07
[4] 0.65447 - 0.90727 == -2.53e-01
[5] 0.01025 - 0.01015 == 1.00e-04
[6] 0.00566 - 0.00784 == -2.19e-03
[7] 0.33335 - 0.07584 == 2.58e-01
── 3. Failure: heredity and bas.lm (@test-bas-lm.R#272) ───────────────────────
pima_BAS$n.models not equal to pima_BAS_no$n.models.
1/1 mismatches
[1] 26 - 18 == 8
── 4. Failure: heredity and bas.lm (@test-bas-lm.R#273) ───────────────────────
sort(pima_BAS$R2) not equal to sort(pima_BAS_no$R2).
Lengths differ: 26 is not 18
── 5. Failure: heredity and bas.lm (@test-bas-lm.R#274) ───────────────────────
sort(pima_BAS$R2) not equal to sort(pima_BAS_no$R2).
Lengths differ: 26 is not 18
── 6. Failure: heredity and bas.lm (@test-bas-lm.R#275) ───────────────────────
sort(pima_BAS$logmarg) not equal to sort(pima_BAS_no$logmarg).
Lengths differ: 26 is not 18
── 7. Failure: heredity and bas.lm (@test-bas-lm.R#276) ───────────────────────
sort(pima_BAS$postprobs) not equal to sort(pima_BAS_no$postprobs).
Lengths differ: 26 is not 18
Marginal Posterior Summaries of Coefficients:
Using BMA
Based on the top 16 models
post mean post SD post p(B != 0)
Intercept 95.42308 0.67885 1.00000
X1 1.40116 0.35351 0.97454
X2 0.42326 0.38407 0.76017
X3 -0.03997 0.33398 0.30660
X4 -0.22077 0.36931 0.44354
Call:
bas.lm(formula = Y ~ ., data = Hald, prior = "BIC", modelprior = uniform())
Marginal Posterior Inclusion Probabilities:
Intercept X1 X2 X3 X4
1.0000 0.9856 0.7921 0.4705 0.5220
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 155 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
1. Failure: herdity and BAS (@test-bas-glm.R#418)
2. Failure: heredity and bas.lm (@test-bas-lm.R#271)
3. Failure: heredity and bas.lm (@test-bas-lm.R#272)
4. Failure: heredity and bas.lm (@test-bas-lm.R#273)
5. Failure: heredity and bas.lm (@test-bas-lm.R#274)
6. Failure: heredity and bas.lm (@test-bas-lm.R#275)
7. Failure: heredity and bas.lm (@test-bas-lm.R#276)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86