CRAN Package Check Results for Package microclass

Last updated on 2020-01-24 08:59:09 CET.

Check Details

Version: 1.1
Check: Rd cross-references
Result: WARN
    Missing link or links in documentation object 'small.16S.Rd':
     '[microseq]{Fasta}'
    
    See section 'Cross-references' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.1
Check: use of SHLIB_OPENMP_*FLAGS in Makefiles
Result: NOTE
     src/Makevars.win: SHLIB_OPENMP_CXXFLAGS is included in PKG_LIBS but not in PKG_CXXFLAGS
    Use of these macros is discussed in sect 1.2.1.1 of 'Writing R
    Extensions'. The macros for different languages may differ so the
    matching macro must be used in PKG_CXXFLAGS (etc) and match that used
    in PKG_LIBS (except for Fortran: see the manual).
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1
Check: examples
Result: ERROR
    Running examples in 'microclass-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: small.16S
    > ### Title: A small example data set
    > ### Aliases: small.16S
    >
    > ### ** Examples
    >
    > data(small.16S)
    > plot(small.16S)
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Error in plot.window(...) : need finite 'xlim' values
    Calls: plot ... plot2 -> plot -> plot.default -> localWindow -> plot.window
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1
Check: package vignettes
Result: NOTE
    Package vignette with placeholder title 'Vignette Title':
     'intro.Rmd'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8

Version: 1.1
Check: compiled code
Result: NOTE
    File ‘microclass/libs/microclass.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1
Check: examples
Result: ERROR
    Running examples in ‘microclass-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: small.16S
    > ### Title: A small example data set
    > ### Aliases: small.16S
    >
    > ### ** Examples
    >
    > data(small.16S)
    > plot(small.16S)
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Error in plot.window(...) : need finite 'xlim' values
    Calls: plot ... plot2 -> plot -> plot.default -> localWindow -> plot.window
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.1
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'microclass-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: small.16S
    > ### Title: A small example data set
    > ### Aliases: small.16S
    >
    > ### ** Examples
    >
    > data(small.16S)
    > plot(small.16S)
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Error in plot.window(...) : need finite 'xlim' values
    Calls: plot ... plot2 -> plot -> plot.default -> localWindow -> plot.window
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'microclass-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: small.16S
    > ### Title: A small example data set
    > ### Aliases: small.16S
    >
    > ### ** Examples
    >
    > data(small.16S)
    > plot(small.16S)
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     NAs introduced by coercion
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Warning in min(x) : no non-missing arguments to min; returning Inf
    Warning in max(x) : no non-missing arguments to max; returning -Inf
    Error in plot.window(...) : need finite 'xlim' values
    Calls: plot ... plot2 -> plot -> plot.default -> localWindow -> plot.window
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64