Last updated on 2020-02-02 06:48:44 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4-11.2 | 18.20 | 166.07 | 184.27 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.4-11.2 | 16.25 | 134.93 | 151.18 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4-11.2 | 223.18 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4-11.2 | 217.79 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.4-11.2 | 43.00 | 274.00 | 317.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.4-11.2 | 68.00 | 342.00 | 410.00 | OK | |
| r-patched-linux-x86_64 | 0.4-11.2 | 16.33 | 158.67 | 175.00 | OK | |
| r-patched-solaris-x86 | 0.4-11.2 | 334.00 | OK | |||
| r-release-linux-x86_64 | 0.4-11.2 | 15.07 | 158.67 | 173.74 | OK | |
| r-release-windows-ix86+x86_64 | 0.4-11.2 | 48.00 | 331.00 | 379.00 | OK | |
| r-release-osx-x86_64 | 0.4-11.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.4-11.2 | 29.00 | 229.00 | 258.00 | OK | |
| r-oldrel-osx-x86_64 | 0.4-11.2 | OK |
Version: 0.4-11.2
Check: examples
Result: ERROR
Running examples in 'RecordLinkage-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compare
> ### Title: Compare Records
> ### Aliases: compare.dedup compare.linkage
> ### Keywords: classif
>
> ### ** Examples
>
> data(RLdata500)
> data(RLdata10000)
>
> # deduplication without blocking, use string comparator on names
> ## Not run: rpairs=compare.dedup(RLdata500,strcmp=1:4)
> # linkage with blocking on first name and year of birth, use phonetic
> # code on first components of first and last name
> rpairs=compare.linkage(RLdata500,RLdata10000,blockfld=c(1,7),phonetic=c(1,3))
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
RecordLinkage
--- call from context ---
pho_h(dataset1[, phonetic])
--- call from argument ---
if (class(str) == "factor") str = as.character(str)
--- R stacktrace ---
where 1: pho_h(dataset1[, phonetic])
where 2: compare.linkage(RLdata500, RLdata10000, blockfld = c(1, 7), phonetic = c(1,
3))
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (str)
{
if (typeof(str) != "character" && class(str) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str)))
if (class(str) == "factor")
str = as.character(str)
out <- .C(".pho_h_sym", str, ans = character(length(str)),
length(str), PACKAGE = "RecordLinkage")
if (any(is.na(str)))
out$ans[is.na(str)] = NA
dim(out$ans) = dim(str)
dimnames(out$ans) = dimnames(str)
return(out$ans)
}
<bytecode: 0x45cf190>
<environment: namespace:RecordLinkage>
--- function search by body ---
Function pho_h in namespace RecordLinkage has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(str) == "factor") str = as.character(str) :
the condition has length > 1
Calls: compare.linkage -> pho_h
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4-11.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'BigData.rnw' using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmpCEqwRG"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: 'ff'
The following objects are masked from 'package:bit':
clone, clone.default, clone.list
The following objects are masked from 'package:utils':
write.csv, write.csv2
The following objects are masked from 'package:base':
is.factor, is.ordered
Loading required package: ffbase
Attaching package: 'ffbase'
The following objects are masked from 'package:ff':
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from 'package:base':
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: 'RecordLinkage'
The following object is masked from 'package:ff':
clone
The following object is masked from 'package:bit':
clone
The following object is masked from 'package:base':
isFALSE
Warning: RSQLite::make.db.names() is deprecated, please switch to DBI::dbQuoteIdentifier().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning: call dbDisconnect() when finished working with a connection
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
--- finished re-building 'BigData.rnw'
--- re-building 'EVT.rnw' using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/Rtmp0cpRPP"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: 'ff'
The following objects are masked from 'package:bit':
clone, clone.default, clone.list
The following objects are masked from 'package:utils':
write.csv, write.csv2
The following objects are masked from 'package:base':
is.factor, is.ordered
Loading required package: ffbase
Attaching package: 'ffbase'
The following objects are masked from 'package:ff':
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from 'package:base':
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: 'RecordLinkage'
The following object is masked from 'package:ff':
clone
The following object is masked from 'package:bit':
clone
The following object is masked from 'package:base':
isFALSE
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
RecordLinkage
--- call from context ---
strcmpfun(left[, strcmp], right[, strcmp])
--- call from argument ---
if (class(str1) == "factor") str = as.character(str1)
--- R stacktrace ---
where 1: strcmpfun(left[, strcmp], right[, strcmp])
where 2: compare.dedup(RLdata500, identity = identity.RLdata500, blockfld = list(1,
3, 5, 6, 7), strcmp = 1:4)
where 3: eval(expr, .GlobalEnv)
where 4: eval(expr, .GlobalEnv)
where 5: withVisible(eval(expr, .GlobalEnv))
where 6: doTryCatch(return(expr), name, parentenv, handler)
where 7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 8: tryCatchList(expr, classes, parentenv, handlers)
where 9: tryCatch(expr, error = function(e) {
call <- conditionCall(e)
if (!is.null(call)) {
if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L)
dcall <- deparse(call)[1L]
prefix <- paste("Error in", dcall, ": ")
LONG <- 75L
sm <- strsplit(conditionMessage(e), "\n")[[1L]]
w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
if (is.na(w))
w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
type = "b")
if (w > LONG)
prefix <- paste0(prefix, "\n ")
}
else prefix <- "Error : "
msg <- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L]))
if (!silent && isTRUE(getOption("show.error.messages"))) {
cat(msg, file = outFile)
.Internal(printDeferredWarnings())
}
invisible(structure(msg, class = "try-error", condition = e))
})
where 10: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
where 11: evalFunc(ce, options)
where 12: tryCatchList(expr, classes, parentenv, handlers)
where 13: tryCatch(evalFunc(ce, options), finally = {
cat("\n")
sink()
})
where 14: driver$runcode(drobj, chunk, chunkopts)
where 15: utils::Sweave(...)
where 16: engine$weave(file, quiet = quiet, encoding = enc)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, classes, parentenv, handlers)
where 20: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
}, error = function(e) {
OK <<- FALSE
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 21: tools:::.buildOneVignette("EVT.rnw", "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/RecordLinkage.Rcheck/vign_test/RecordLinkage",
TRUE, FALSE, "EVT", "", "/tmp/RtmpJ9Oin6/file45ec3e6266f4.rds")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (str1, str2, W_1 = 1/3, W_2 = 1/3, W_3 = 1/3, r = 0.5)
{
if (typeof(str1) != "character" && class(str1) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str1)))
if (class(str1) == "factor")
str = as.character(str1)
if (typeof(str2) != "character" && class(str2) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str2)))
if (class(str2) == "factor")
str = as.character(str2)
if ((is.array(str1) || is.array(str2)) && !identical(dim(str1),
dim(str2)))
stop("non-conformable arrays")
if (length(str1) == 0 || length(str2) == 0)
return(double(0))
ans <- .Call(".jarowinklerCALL", str1, str2, as.double(W_1),
as.double(W_2), as.double(W_3), as.double(r), PACKAGE = "RecordLinkage")
if (any(is.na(str1), is.na(str2)))
ans[is.na(str1) | is.na(str2)] = NA
if (is.array(str1))
return(array(ans, dim(str1)))
if (is.array(str2))
return(array(ans, dim(str2)))
return(ans)
}
<bytecode: 0x7ecb838>
<environment: namespace:RecordLinkage>
--- function search by body ---
Function jarowinkler in namespace RecordLinkage has this body.
----------- END OF FAILURE REPORT --------------
Error: processing vignette 'EVT.rnw' failed with diagnostics:
chunk 3
Error in if (class(str1) == "factor") str = as.character(str1) :
the condition has length > 1
--- failed re-building 'EVT.rnw'
--- re-building 'Supervised.rnw' using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmpsNK4do"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: 'ff'
The following objects are masked from 'package:bit':
clone, clone.default, clone.list
The following objects are masked from 'package:utils':
write.csv, write.csv2
The following objects are masked from 'package:base':
is.factor, is.ordered
Loading required package: ffbase
Attaching package: 'ffbase'
The following objects are masked from 'package:ff':
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from 'package:base':
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: 'RecordLinkage'
The following object is masked from 'package:ff':
clone
The following object is masked from 'package:bit':
clone
The following object is masked from 'package:base':
isFALSE
--- finished re-building 'Supervised.rnw'
--- re-building 'WeightBased.rnw' using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmptLXItN"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: 'ff'
The following objects are masked from 'package:bit':
clone, clone.default, clone.list
The following objects are masked from 'package:utils':
write.csv, write.csv2
The following objects are masked from 'package:base':
is.factor, is.ordered
Loading required package: ffbase
Attaching package: 'ffbase'
The following objects are masked from 'package:ff':
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from 'package:base':
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: 'RecordLinkage'
The following object is masked from 'package:ff':
clone
The following object is masked from 'package:bit':
clone
The following object is masked from 'package:base':
isFALSE
--- finished re-building 'WeightBased.rnw'
SUMMARY: processing the following file failed:
'EVT.rnw'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.4-11.2
Check: examples
Result: ERROR
Running examples in ‘RecordLinkage-Ex.R’ failed
The error most likely occurred in:
> ### Name: compare
> ### Title: Compare Records
> ### Aliases: compare.dedup compare.linkage
> ### Keywords: classif
>
> ### ** Examples
>
> data(RLdata500)
> data(RLdata10000)
>
> # deduplication without blocking, use string comparator on names
> ## Not run: rpairs=compare.dedup(RLdata500,strcmp=1:4)
> # linkage with blocking on first name and year of birth, use phonetic
> # code on first components of first and last name
> rpairs=compare.linkage(RLdata500,RLdata10000,blockfld=c(1,7),phonetic=c(1,3))
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
RecordLinkage
--- call from context ---
pho_h(dataset1[, phonetic])
--- call from argument ---
if (class(str) == "factor") str = as.character(str)
--- R stacktrace ---
where 1: pho_h(dataset1[, phonetic])
where 2: compare.linkage(RLdata500, RLdata10000, blockfld = c(1, 7), phonetic = c(1,
3))
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (str)
{
if (typeof(str) != "character" && class(str) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str)))
if (class(str) == "factor")
str = as.character(str)
out <- .C(".pho_h_sym", str, ans = character(length(str)),
length(str), PACKAGE = "RecordLinkage")
if (any(is.na(str)))
out$ans[is.na(str)] = NA
dim(out$ans) = dim(str)
dimnames(out$ans) = dimnames(str)
return(out$ans)
}
<bytecode: 0x60d1a88>
<environment: namespace:RecordLinkage>
--- function search by body ---
Function pho_h in namespace RecordLinkage has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(str) == "factor") str = as.character(str) :
the condition has length > 1
Calls: compare.linkage -> pho_h
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4-11.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘BigData.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/Rtmpqlft3u/working_dir/RtmpLMBX31"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
Warning: RSQLite::make.db.names() is deprecated, please switch to DBI::dbQuoteIdentifier().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning: call dbDisconnect() when finished working with a connection
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
--- finished re-building ‘BigData.rnw’
--- re-building ‘EVT.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/Rtmpqlft3u/working_dir/RtmpNuIbEK"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
RecordLinkage
--- call from context ---
strcmpfun(left[, strcmp], right[, strcmp])
--- call from argument ---
if (class(str1) == "factor") str = as.character(str1)
--- R stacktrace ---
where 1: strcmpfun(left[, strcmp], right[, strcmp])
where 2: compare.dedup(RLdata500, identity = identity.RLdata500, blockfld = list(1,
3, 5, 6, 7), strcmp = 1:4)
where 3: eval(expr, .GlobalEnv)
where 4: eval(expr, .GlobalEnv)
where 5: withVisible(eval(expr, .GlobalEnv))
where 6: doTryCatch(return(expr), name, parentenv, handler)
where 7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 8: tryCatchList(expr, classes, parentenv, handlers)
where 9: tryCatch(expr, error = function(e) {
call <- conditionCall(e)
if (!is.null(call)) {
if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L)
dcall <- deparse(call)[1L]
prefix <- paste("Error in", dcall, ": ")
LONG <- 75L
sm <- strsplit(conditionMessage(e), "\n")[[1L]]
w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
if (is.na(w))
w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
type = "b")
if (w > LONG)
prefix <- paste0(prefix, "\n ")
}
else prefix <- "Error : "
msg <- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L]))
if (!silent && isTRUE(getOption("show.error.messages"))) {
cat(msg, file = outFile)
.Internal(printDeferredWarnings())
}
invisible(structure(msg, class = "try-error", condition = e))
})
where 10: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
where 11: evalFunc(ce, options)
where 12: tryCatchList(expr, classes, parentenv, handlers)
where 13: tryCatch(evalFunc(ce, options), finally = {
cat("\n")
sink()
})
where 14: driver$runcode(drobj, chunk, chunkopts)
where 15: utils::Sweave(...)
where 16: engine$weave(file, quiet = quiet, encoding = enc)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, classes, parentenv, handlers)
where 20: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
}, error = function(e) {
OK <<- FALSE
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 21: tools:::.buildOneVignette("EVT.rnw", "/data/gannet/ripley/R/packages/tests-clang/RecordLinkage.Rcheck/vign_test/RecordLinkage",
TRUE, FALSE, "EVT", "", "/tmp/Rtmpqlft3u/working_dir/RtmpMCiKi8/file72d15ed80734.rds")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (str1, str2, W_1 = 1/3, W_2 = 1/3, W_3 = 1/3, r = 0.5)
{
if (typeof(str1) != "character" && class(str1) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str1)))
if (class(str1) == "factor")
str = as.character(str1)
if (typeof(str2) != "character" && class(str2) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str2)))
if (class(str2) == "factor")
str = as.character(str2)
if ((is.array(str1) || is.array(str2)) && !identical(dim(str1),
dim(str2)))
stop("non-conformable arrays")
if (length(str1) == 0 || length(str2) == 0)
return(double(0))
ans <- .Call(".jarowinklerCALL", str1, str2, as.double(W_1),
as.double(W_2), as.double(W_3), as.double(r), PACKAGE = "RecordLinkage")
if (any(is.na(str1), is.na(str2)))
ans[is.na(str1) | is.na(str2)] = NA
if (is.array(str1))
return(array(ans, dim(str1)))
if (is.array(str2))
return(array(ans, dim(str2)))
return(ans)
}
<bytecode: 0x6b70640>
<environment: namespace:RecordLinkage>
--- function search by body ---
Function jarowinkler in namespace RecordLinkage has this body.
----------- END OF FAILURE REPORT --------------
Error: processing vignette 'EVT.rnw' failed with diagnostics:
chunk 3
Error in if (class(str1) == "factor") str = as.character(str1) :
the condition has length > 1
--- failed re-building ‘EVT.rnw’
--- re-building ‘Supervised.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/Rtmpqlft3u/working_dir/RtmpuJAPgF"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
--- finished re-building ‘Supervised.rnw’
--- re-building ‘WeightBased.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/Rtmpqlft3u/working_dir/RtmpEOHhCU"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
--- finished re-building ‘WeightBased.rnw’
SUMMARY: processing the following file failed:
‘EVT.rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.4-11.2
Check: examples
Result: ERROR
Running examples in ‘RecordLinkage-Ex.R’ failed
The error most likely occurred in:
> ### Name: compare
> ### Title: Compare Records
> ### Aliases: compare.dedup compare.linkage
> ### Keywords: classif
>
> ### ** Examples
>
> data(RLdata500)
> data(RLdata10000)
>
> # deduplication without blocking, use string comparator on names
> ## Not run: rpairs=compare.dedup(RLdata500,strcmp=1:4)
> # linkage with blocking on first name and year of birth, use phonetic
> # code on first components of first and last name
> rpairs=compare.linkage(RLdata500,RLdata10000,blockfld=c(1,7),phonetic=c(1,3))
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
RecordLinkage
--- call from context ---
pho_h(dataset1[, phonetic])
--- call from argument ---
if (class(str) == "factor") str = as.character(str)
--- R stacktrace ---
where 1: pho_h(dataset1[, phonetic])
where 2: compare.linkage(RLdata500, RLdata10000, blockfld = c(1, 7), phonetic = c(1,
3))
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (str)
{
if (typeof(str) != "character" && class(str) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str)))
if (class(str) == "factor")
str = as.character(str)
out <- .C(".pho_h_sym", str, ans = character(length(str)),
length(str), PACKAGE = "RecordLinkage")
if (any(is.na(str)))
out$ans[is.na(str)] = NA
dim(out$ans) = dim(str)
dimnames(out$ans) = dimnames(str)
return(out$ans)
}
<bytecode: 0x67fa488>
<environment: namespace:RecordLinkage>
--- function search by body ---
Function pho_h in namespace RecordLinkage has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(str) == "factor") str = as.character(str) :
the condition has length > 1
Calls: compare.linkage -> pho_h
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.4-11.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘BigData.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmpFf9zG4/working_dir/Rtmprs7SOr"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
Warning: RSQLite::make.db.names() is deprecated, please switch to DBI::dbQuoteIdentifier().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning: call dbDisconnect() when finished working with a connection
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
Warning in result_fetch(res@ptr, n = n) :
SQL statements must be issued with dbExecute() or dbSendStatement() instead of dbGetQuery() or dbSendQuery().
--- finished re-building ‘BigData.rnw’
--- re-building ‘EVT.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmpFf9zG4/working_dir/Rtmpez6F9t"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
RecordLinkage
--- call from context ---
strcmpfun(left[, strcmp], right[, strcmp])
--- call from argument ---
if (class(str1) == "factor") str = as.character(str1)
--- R stacktrace ---
where 1: strcmpfun(left[, strcmp], right[, strcmp])
where 2: compare.dedup(RLdata500, identity = identity.RLdata500, blockfld = list(1,
3, 5, 6, 7), strcmp = 1:4)
where 3: eval(expr, .GlobalEnv)
where 4: eval(expr, .GlobalEnv)
where 5: withVisible(eval(expr, .GlobalEnv))
where 6: doTryCatch(return(expr), name, parentenv, handler)
where 7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 8: tryCatchList(expr, classes, parentenv, handlers)
where 9: tryCatch(expr, error = function(e) {
call <- conditionCall(e)
if (!is.null(call)) {
if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L)
dcall <- deparse(call)[1L]
prefix <- paste("Error in", dcall, ": ")
LONG <- 75L
sm <- strsplit(conditionMessage(e), "\n")[[1L]]
w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
if (is.na(w))
w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],
type = "b")
if (w > LONG)
prefix <- paste0(prefix, "\n ")
}
else prefix <- "Error : "
msg <- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L]))
if (!silent && isTRUE(getOption("show.error.messages"))) {
cat(msg, file = outFile)
.Internal(printDeferredWarnings())
}
invisible(structure(msg, class = "try-error", condition = e))
})
where 10: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
where 11: evalFunc(ce, options)
where 12: tryCatchList(expr, classes, parentenv, handlers)
where 13: tryCatch(evalFunc(ce, options), finally = {
cat("\n")
sink()
})
where 14: driver$runcode(drobj, chunk, chunkopts)
where 15: utils::Sweave(...)
where 16: engine$weave(file, quiet = quiet, encoding = enc)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, classes, parentenv, handlers)
where 20: tryCatch({
engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)
output <- find_vignette_product(name, by = "weave", engine = engine)
if (!have.makefile && vignette_is_tex(output)) {
texi2pdf(file = output, clean = FALSE, quiet = quiet)
output <- find_vignette_product(name, by = "texi2pdf",
engine = engine)
}
}, error = function(e) {
OK <<- FALSE
message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
file, conditionMessage(e)))
})
where 21: tools:::.buildOneVignette("EVT.rnw", "/data/gannet/ripley/R/packages/tests-devel/RecordLinkage.Rcheck/vign_test/RecordLinkage",
TRUE, FALSE, "EVT", "", "/tmp/RtmpFf9zG4/working_dir/RtmpFlTn4l/file16a05e20b8e6.rds")
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (str1, str2, W_1 = 1/3, W_2 = 1/3, W_3 = 1/3, r = 0.5)
{
if (typeof(str1) != "character" && class(str1) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str1)))
if (class(str1) == "factor")
str = as.character(str1)
if (typeof(str2) != "character" && class(str2) != "factor")
stop(sprintf("Illegal data type: %s", typeof(str2)))
if (class(str2) == "factor")
str = as.character(str2)
if ((is.array(str1) || is.array(str2)) && !identical(dim(str1),
dim(str2)))
stop("non-conformable arrays")
if (length(str1) == 0 || length(str2) == 0)
return(double(0))
ans <- .Call(".jarowinklerCALL", str1, str2, as.double(W_1),
as.double(W_2), as.double(W_3), as.double(r), PACKAGE = "RecordLinkage")
if (any(is.na(str1), is.na(str2)))
ans[is.na(str1) | is.na(str2)] = NA
if (is.array(str1))
return(array(ans, dim(str1)))
if (is.array(str2))
return(array(ans, dim(str2)))
return(ans)
}
<bytecode: 0xcf9d470>
<environment: namespace:RecordLinkage>
--- function search by body ---
Function jarowinkler in namespace RecordLinkage has this body.
----------- END OF FAILURE REPORT --------------
Error: processing vignette 'EVT.rnw' failed with diagnostics:
chunk 3
Error in if (class(str1) == "factor") str = as.character(str1) :
the condition has length > 1
--- failed re-building ‘EVT.rnw’
--- re-building ‘Supervised.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmpFf9zG4/working_dir/RtmpPSGysO"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
--- finished re-building ‘Supervised.rnw’
--- re-building ‘WeightBased.rnw’ using Sweave
Loading required package: DBI
Loading required package: RSQLite
Loading required package: ff
Loading required package: bit
Attaching package bit
package:bit (c) 2008-2012 Jens Oehlschlaegel (GPL-2)
creators: bit bitwhich
coercion: as.logical as.integer as.bit as.bitwhich which
operator: ! & | xor != ==
querying: print length any all min max range sum summary
bit access: length<- [ [<- [[ [[<-
for more help type ?bit
Attaching package: ‘bit’
The following object is masked from ‘package:base’:
xor
Attaching package ff
- getOption("fftempdir")=="/tmp/RtmpFf9zG4/working_dir/RtmpbVnSXI"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system
Attaching package: ‘ff’
The following objects are masked from ‘package:bit’:
clone, clone.default, clone.list
The following objects are masked from ‘package:utils’:
write.csv, write.csv2
The following objects are masked from ‘package:base’:
is.factor, is.ordered
Loading required package: ffbase
Attaching package: ‘ffbase’
The following objects are masked from ‘package:ff’:
[.ff, [.ffdf, [<-.ff, [<-.ffdf
The following objects are masked from ‘package:base’:
%in%, table
RecordLinkage library
[c] IMBEI Mainz
Attaching package: ‘RecordLinkage’
The following object is masked from ‘package:ff’:
clone
The following object is masked from ‘package:bit’:
clone
The following object is masked from ‘package:base’:
isFALSE
--- finished re-building ‘WeightBased.rnw’
SUMMARY: processing the following file failed:
‘EVT.rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc