CRAN Package Check Results for Package bioplots

Last updated on 2020-02-05 17:47:24 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.1 3.84 37.82 41.66 ERROR
r-devel-linux-x86_64-debian-gcc 0.0.1 3.15 29.92 33.07 ERROR
r-devel-linux-x86_64-fedora-clang 0.0.1 51.52 ERROR
r-devel-linux-x86_64-fedora-gcc 0.0.1 51.87 ERROR
r-devel-windows-ix86+x86_64 0.0.1 18.00 74.00 92.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 0.0.1 13.00 79.00 92.00 NOTE
r-patched-linux-x86_64 0.0.1 3.13 33.00 36.13 NOTE
r-patched-solaris-x86 0.0.1 76.10 NOTE
r-release-linux-x86_64 0.0.1 3.44 32.93 36.37 NOTE
r-release-windows-ix86+x86_64 0.0.1 33.00 76.00 109.00 NOTE
r-release-osx-x86_64 0.0.1 NOTE
r-oldrel-windows-ix86+x86_64 0.0.1 7.00 49.00 56.00 NOTE
r-oldrel-osx-x86_64 0.0.1 NOTE

Check Details

Version: 0.0.1
Check: files in ‘vignettes’
Result: NOTE
    Package has no Sweave vignette sources and no VignetteBuilder field.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.0.1
Check: examples
Result: ERROR
    Running examples in 'bioplots-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: heatmap.overlaps
    > ### Title: Plot heatmat
    > ### Aliases: heatmap.overlaps
    >
    > ### ** Examples
    >
    > mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
    > colnames(mat) <- paste0("Treat", 1:9)
    > rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
    + "abc", "abd", "acd", "bcd", "abcd")
    > head(mat)
     Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
    a 38 39 39 30 60 35 48 29 36
    b 58 46 24 27 80 40 36 64 63
    c 23 30 60 35 40 34 57 23 63
    d 51 21 38 45 28 54 64 36 59
    ab 29 47 49 44 41 23 59 47 38
    ac 29 52 38 28 67 54 52 47 21
    >
    > heatmap.overlaps(mat)
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    bioplots
     --- call from context ---
    heatmap.overlaps(mat)
     --- call from argument ---
    if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
    }
     --- R stacktrace ---
    where 1: heatmap.overlaps(mat)
    
     --- value of length: 2 type: logical ---
    [1] FALSE FALSE
     --- function from context ---
    function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
     x.axis.angle = 90)
    {
     if (is.na(xlab))
     xlab <- "condition"
     if (is.na(ylab))
     ylab <- "pattern"
     if (is.na(legend))
     legend <- "overlaps"
     if (is.na(col))
     col <- rev(brewer.pal(9, "Spectral"))
     obj <- NULL
     x.class <- class(x)
     if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     if (x.class == "matrix") {
     obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     obj
    }
    <bytecode: 0x2d7bb50>
    <environment: namespace:bioplots>
     --- function search by body ---
    Function heatmap.overlaps in namespace bioplots has this body.
     ----------- END OF FAILURE REPORT --------------
    Error in if (x.class == "list") { : the condition has length > 1
    Calls: heatmap.overlaps
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.0.1
Check: examples
Result: ERROR
    Running examples in ‘bioplots-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: heatmap.overlaps
    > ### Title: Plot heatmat
    > ### Aliases: heatmap.overlaps
    >
    > ### ** Examples
    >
    > mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
    > colnames(mat) <- paste0("Treat", 1:9)
    > rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
    + "abc", "abd", "acd", "bcd", "abcd")
    > head(mat)
     Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
    a 38 39 39 30 60 35 48 29 36
    b 58 46 24 27 80 40 36 64 63
    c 23 30 60 35 40 34 57 23 63
    d 51 21 38 45 28 54 64 36 59
    ab 29 47 49 44 41 23 59 47 38
    ac 29 52 38 28 67 54 52 47 21
    >
    > heatmap.overlaps(mat)
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    bioplots
     --- call from context ---
    heatmap.overlaps(mat)
     --- call from argument ---
    if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
    }
     --- R stacktrace ---
    where 1: heatmap.overlaps(mat)
    
     --- value of length: 2 type: logical ---
    [1] FALSE FALSE
     --- function from context ---
    function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
     x.axis.angle = 90)
    {
     if (is.na(xlab))
     xlab <- "condition"
     if (is.na(ylab))
     ylab <- "pattern"
     if (is.na(legend))
     legend <- "overlaps"
     if (is.na(col))
     col <- rev(brewer.pal(9, "Spectral"))
     obj <- NULL
     x.class <- class(x)
     if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     if (x.class == "matrix") {
     obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     obj
    }
    <bytecode: 0x55857a6357a8>
    <environment: namespace:bioplots>
     --- function search by body ---
    Function heatmap.overlaps in namespace bioplots has this body.
     ----------- END OF FAILURE REPORT --------------
    Error in if (x.class == "list") { : the condition has length > 1
    Calls: heatmap.overlaps
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.0.1
Check: package dependencies
Result: WARN
    Requires orphaned package: ‘gplots’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.0.1
Check: examples
Result: ERROR
    Running examples in ‘bioplots-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: heatmap.overlaps
    > ### Title: Plot heatmat
    > ### Aliases: heatmap.overlaps
    >
    > ### ** Examples
    >
    > mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
    > colnames(mat) <- paste0("Treat", 1:9)
    > rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
    + "abc", "abd", "acd", "bcd", "abcd")
    > head(mat)
     Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
    a 38 39 39 30 60 35 48 29 36
    b 58 46 24 27 80 40 36 64 63
    c 23 30 60 35 40 34 57 23 63
    d 51 21 38 45 28 54 64 36 59
    ab 29 47 49 44 41 23 59 47 38
    ac 29 52 38 28 67 54 52 47 21
    >
    > heatmap.overlaps(mat)
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    bioplots
     --- call from context ---
    heatmap.overlaps(mat)
     --- call from argument ---
    if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
    }
     --- R stacktrace ---
    where 1: heatmap.overlaps(mat)
    
     --- value of length: 2 type: logical ---
    [1] FALSE FALSE
     --- function from context ---
    function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
     x.axis.angle = 90)
    {
     if (is.na(xlab))
     xlab <- "condition"
     if (is.na(ylab))
     ylab <- "pattern"
     if (is.na(legend))
     legend <- "overlaps"
     if (is.na(col))
     col <- rev(brewer.pal(9, "Spectral"))
     obj <- NULL
     x.class <- class(x)
     if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     if (x.class == "matrix") {
     obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     obj
    }
    <bytecode: 0x2ccc8d0>
    <environment: namespace:bioplots>
     --- function search by body ---
    Function heatmap.overlaps in namespace bioplots has this body.
     ----------- END OF FAILURE REPORT --------------
    Error in if (x.class == "list") { : the condition has length > 1
    Calls: heatmap.overlaps
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.0.1
Check: examples
Result: ERROR
    Running examples in ‘bioplots-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: heatmap.overlaps
    > ### Title: Plot heatmat
    > ### Aliases: heatmap.overlaps
    >
    > ### ** Examples
    >
    > mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
    > colnames(mat) <- paste0("Treat", 1:9)
    > rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
    + "abc", "abd", "acd", "bcd", "abcd")
    > head(mat)
     Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
    a 38 39 39 30 60 35 48 29 36
    b 58 46 24 27 80 40 36 64 63
    c 23 30 60 35 40 34 57 23 63
    d 51 21 38 45 28 54 64 36 59
    ab 29 47 49 44 41 23 59 47 38
    ac 29 52 38 28 67 54 52 47 21
    >
    > heatmap.overlaps(mat)
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    bioplots
     --- call from context ---
    heatmap.overlaps(mat)
     --- call from argument ---
    if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
    }
     --- R stacktrace ---
    where 1: heatmap.overlaps(mat)
    
     --- value of length: 2 type: logical ---
    [1] FALSE FALSE
     --- function from context ---
    function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
     x.axis.angle = 90)
    {
     if (is.na(xlab))
     xlab <- "condition"
     if (is.na(ylab))
     ylab <- "pattern"
     if (is.na(legend))
     legend <- "overlaps"
     if (is.na(col))
     col <- rev(brewer.pal(9, "Spectral"))
     obj <- NULL
     x.class <- class(x)
     if (x.class == "list") {
     mat <- .heatmap.overlaps.list(x)
     obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     if (x.class == "matrix") {
     obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
     col, lim, x.axis.angle)
     }
     obj
    }
    <bytecode: 0x205b878>
    <environment: namespace:bioplots>
     --- function search by body ---
    Function heatmap.overlaps in namespace bioplots has this body.
     ----------- END OF FAILURE REPORT --------------
    Error in if (x.class == "list") { : the condition has length > 1
    Calls: heatmap.overlaps
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc