Last updated on 2020-02-05 17:47:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 3.84 | 37.82 | 41.66 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 3.15 | 29.92 | 33.07 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 51.52 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 51.87 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.0.1 | 18.00 | 74.00 | 92.00 | NOTE | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.0.1 | 13.00 | 79.00 | 92.00 | NOTE | |
| r-patched-linux-x86_64 | 0.0.1 | 3.13 | 33.00 | 36.13 | NOTE | |
| r-patched-solaris-x86 | 0.0.1 | 76.10 | NOTE | |||
| r-release-linux-x86_64 | 0.0.1 | 3.44 | 32.93 | 36.37 | NOTE | |
| r-release-windows-ix86+x86_64 | 0.0.1 | 33.00 | 76.00 | 109.00 | NOTE | |
| r-release-osx-x86_64 | 0.0.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.0.1 | 7.00 | 49.00 | 56.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.0.1 | NOTE |
Version: 0.0.1
Check: files in ‘vignettes’
Result: NOTE
Package has no Sweave vignette sources and no VignetteBuilder field.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in 'bioplots-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: heatmap.overlaps
> ### Title: Plot heatmat
> ### Aliases: heatmap.overlaps
>
> ### ** Examples
>
> mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
> colnames(mat) <- paste0("Treat", 1:9)
> rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
+ "abc", "abd", "acd", "bcd", "abcd")
> head(mat)
Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
a 38 39 39 30 60 35 48 29 36
b 58 46 24 27 80 40 36 64 63
c 23 30 60 35 40 34 57 23 63
d 51 21 38 45 28 54 64 36 59
ab 29 47 49 44 41 23 59 47 38
ac 29 52 38 28 67 54 52 47 21
>
> heatmap.overlaps(mat)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
bioplots
--- call from context ---
heatmap.overlaps(mat)
--- call from argument ---
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
--- R stacktrace ---
where 1: heatmap.overlaps(mat)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
x.axis.angle = 90)
{
if (is.na(xlab))
xlab <- "condition"
if (is.na(ylab))
ylab <- "pattern"
if (is.na(legend))
legend <- "overlaps"
if (is.na(col))
col <- rev(brewer.pal(9, "Spectral"))
obj <- NULL
x.class <- class(x)
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
if (x.class == "matrix") {
obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
col, lim, x.axis.angle)
}
obj
}
<bytecode: 0x2d7bb50>
<environment: namespace:bioplots>
--- function search by body ---
Function heatmap.overlaps in namespace bioplots has this body.
----------- END OF FAILURE REPORT --------------
Error in if (x.class == "list") { : the condition has length > 1
Calls: heatmap.overlaps
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘bioplots-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: heatmap.overlaps
> ### Title: Plot heatmat
> ### Aliases: heatmap.overlaps
>
> ### ** Examples
>
> mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
> colnames(mat) <- paste0("Treat", 1:9)
> rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
+ "abc", "abd", "acd", "bcd", "abcd")
> head(mat)
Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
a 38 39 39 30 60 35 48 29 36
b 58 46 24 27 80 40 36 64 63
c 23 30 60 35 40 34 57 23 63
d 51 21 38 45 28 54 64 36 59
ab 29 47 49 44 41 23 59 47 38
ac 29 52 38 28 67 54 52 47 21
>
> heatmap.overlaps(mat)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
bioplots
--- call from context ---
heatmap.overlaps(mat)
--- call from argument ---
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
--- R stacktrace ---
where 1: heatmap.overlaps(mat)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
x.axis.angle = 90)
{
if (is.na(xlab))
xlab <- "condition"
if (is.na(ylab))
ylab <- "pattern"
if (is.na(legend))
legend <- "overlaps"
if (is.na(col))
col <- rev(brewer.pal(9, "Spectral"))
obj <- NULL
x.class <- class(x)
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
if (x.class == "matrix") {
obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
col, lim, x.axis.angle)
}
obj
}
<bytecode: 0x55857a6357a8>
<environment: namespace:bioplots>
--- function search by body ---
Function heatmap.overlaps in namespace bioplots has this body.
----------- END OF FAILURE REPORT --------------
Error in if (x.class == "list") { : the condition has length > 1
Calls: heatmap.overlaps
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: package dependencies
Result: WARN
Requires orphaned package: ‘gplots’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘bioplots-Ex.R’ failed
The error most likely occurred in:
> ### Name: heatmap.overlaps
> ### Title: Plot heatmat
> ### Aliases: heatmap.overlaps
>
> ### ** Examples
>
> mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
> colnames(mat) <- paste0("Treat", 1:9)
> rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
+ "abc", "abd", "acd", "bcd", "abcd")
> head(mat)
Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
a 38 39 39 30 60 35 48 29 36
b 58 46 24 27 80 40 36 64 63
c 23 30 60 35 40 34 57 23 63
d 51 21 38 45 28 54 64 36 59
ab 29 47 49 44 41 23 59 47 38
ac 29 52 38 28 67 54 52 47 21
>
> heatmap.overlaps(mat)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
bioplots
--- call from context ---
heatmap.overlaps(mat)
--- call from argument ---
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
--- R stacktrace ---
where 1: heatmap.overlaps(mat)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
x.axis.angle = 90)
{
if (is.na(xlab))
xlab <- "condition"
if (is.na(ylab))
ylab <- "pattern"
if (is.na(legend))
legend <- "overlaps"
if (is.na(col))
col <- rev(brewer.pal(9, "Spectral"))
obj <- NULL
x.class <- class(x)
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
if (x.class == "matrix") {
obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
col, lim, x.axis.angle)
}
obj
}
<bytecode: 0x2ccc8d0>
<environment: namespace:bioplots>
--- function search by body ---
Function heatmap.overlaps in namespace bioplots has this body.
----------- END OF FAILURE REPORT --------------
Error in if (x.class == "list") { : the condition has length > 1
Calls: heatmap.overlaps
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘bioplots-Ex.R’ failed
The error most likely occurred in:
> ### Name: heatmap.overlaps
> ### Title: Plot heatmat
> ### Aliases: heatmap.overlaps
>
> ### ** Examples
>
> mat <- matrix(rnbinom(135, size = 10, prob = 0.2), nrow = 15, ncol = 9)
> colnames(mat) <- paste0("Treat", 1:9)
> rownames(mat) <- c("a", "b", "c", "d", "ab", "ac", "ad", "bc", "bd", "cd",
+ "abc", "abd", "acd", "bcd", "abcd")
> head(mat)
Treat1 Treat2 Treat3 Treat4 Treat5 Treat6 Treat7 Treat8 Treat9
a 38 39 39 30 60 35 48 29 36
b 58 46 24 27 80 40 36 64 63
c 23 30 60 35 40 34 57 23 63
d 51 21 38 45 28 54 64 36 59
ab 29 47 49 44 41 23 59 47 38
ac 29 52 38 28 67 54 52 47 21
>
> heatmap.overlaps(mat)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
bioplots
--- call from context ---
heatmap.overlaps(mat)
--- call from argument ---
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
--- R stacktrace ---
where 1: heatmap.overlaps(mat)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (x, legend = NA, xlab = NA, ylab = NA, col = NA, lim = NA,
x.axis.angle = 90)
{
if (is.na(xlab))
xlab <- "condition"
if (is.na(ylab))
ylab <- "pattern"
if (is.na(legend))
legend <- "overlaps"
if (is.na(col))
col <- rev(brewer.pal(9, "Spectral"))
obj <- NULL
x.class <- class(x)
if (x.class == "list") {
mat <- .heatmap.overlaps.list(x)
obj <- .heatmap.overlaps.matrix(mat, legend, xlab, ylab,
col, lim, x.axis.angle)
}
if (x.class == "matrix") {
obj <- .heatmap.overlaps.matrix(x, legend, xlab, ylab,
col, lim, x.axis.angle)
}
obj
}
<bytecode: 0x205b878>
<environment: namespace:bioplots>
--- function search by body ---
Function heatmap.overlaps in namespace bioplots has this body.
----------- END OF FAILURE REPORT --------------
Error in if (x.class == "list") { : the condition has length > 1
Calls: heatmap.overlaps
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc