CRAN Package Check Results for Package GerminaR

Last updated on 2020-02-11 08:48:13 CET.

Check Details

Version: 1.3
Check: examples
Result: ERROR
    Running examples in 'GerminaR-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: ger_ASG
    > ### Title: ArcSin of Germination Percentage
    > ### Aliases: ger_ASG
    >
    > ### ** Examples
    >
    >
    > library(GerminaR)
    > dt <- prosopis
    > gas <- ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
    Error: argument is not interpretable as logical
    Backtrace:
     x
     1. \-GerminaR::ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
     2. \-GerminaR::ger_GRP(SeedN, evalName, data)
     3. \-GerminaR::ger_GRS(evalName, data)
     4. \-GerminaR::evalDays(evalName, data)
     5. +-dplyr::select(data, starts_with(colnames(data), evalName))
     6. \-dplyr:::select.data.frame(data, starts_with(colnames(data), evalName))
     7. \-tidyselect::vars_select(tbl_vars(.data), !!!enquos(...))
     8. \-tidyselect:::eval_select_impl(...)
     9. \-tidyselect:::with_subscript_errors(...)
    <parent: error/simpleError>
    Backtrace:
    x
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'GerminaR.Rmd' using rmarkdown
    Quitting from lines 67-70 (GerminaR.Rmd)
    Error: processing vignette 'GerminaR.Rmd' failed with diagnostics:
    argument is not interpretable as logical
    --- failed re-building 'GerminaR.Rmd'
    
    SUMMARY: processing the following file failed:
     'GerminaR.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3
Check: examples
Result: ERROR
    Running examples in ‘GerminaR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: ger_ASG
    > ### Title: ArcSin of Germination Percentage
    > ### Aliases: ger_ASG
    >
    > ### ** Examples
    >
    >
    > library(GerminaR)
    > dt <- prosopis
    > gas <- ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
    Error: argument is not interpretable as logical
    Backtrace:
     █
     1. └─GerminaR::ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
     2. └─GerminaR::ger_GRP(SeedN, evalName, data)
     3. └─GerminaR::ger_GRS(evalName, data)
     4. └─GerminaR::evalDays(evalName, data)
     5. ├─dplyr::select(data, starts_with(colnames(data), evalName))
     6. └─dplyr:::select.data.frame(data, starts_with(colnames(data), evalName))
     7. └─tidyselect::vars_select(tbl_vars(.data), !!!enquos(...))
     8. └─tidyselect:::eval_select_impl(...)
     9. └─tidyselect:::with_subscript_errors(...)
    <parent: error/simpleError>
    Backtrace:
    █
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘DT’ ‘shinydashboard’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.3
Check: examples
Result: ERROR
    Running examples in ‘GerminaR-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: ger_ASG
    > ### Title: ArcSin of Germination Percentage
    > ### Aliases: ger_ASG
    >
    > ### ** Examples
    >
    >
    > library(GerminaR)
    > dt <- prosopis
    > gas <- ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
    Error: argument is not interpretable as logical
    Backtrace:
     █
     1. └─GerminaR::ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
     2. └─GerminaR::ger_GRP(SeedN, evalName, data)
     3. └─GerminaR::ger_GRS(evalName, data)
     4. └─GerminaR::evalDays(evalName, data)
     5. ├─dplyr::select(data, starts_with(colnames(data), evalName))
     6. └─dplyr:::select.data.frame(data, starts_with(colnames(data), evalName))
     7. └─tidyselect::vars_select(tbl_vars(.data), !!!enquos(...))
     8. └─tidyselect:::eval_select_impl(...)
     9. └─tidyselect:::with_subscript_errors(...)
    <parent: error/simpleError>
    Backtrace:
    █
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86

Version: 1.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘GerminaR.Rmd’ using rmarkdown
    Quitting from lines 67-70 (GerminaR.Rmd)
    Error: processing vignette 'GerminaR.Rmd' failed with diagnostics:
    argument is not interpretable as logical
    --- failed re-building ‘GerminaR.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘GerminaR.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64

Version: 1.3
Check: examples
Result: ERROR
    Running examples in 'GerminaR-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: ger_ASG
    > ### Title: ArcSin of Germination Percentage
    > ### Aliases: ger_ASG
    >
    > ### ** Examples
    >
    >
    > library(GerminaR)
    > dt <- prosopis
    > gas <- ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
    Error: argument is not interpretable as logical
    Backtrace:
     x
     1. \-GerminaR::ger_ASG(SeedN = "seeds", evalName = "D", data = dt)
     2. \-GerminaR::ger_GRP(SeedN, evalName, data)
     3. \-GerminaR::ger_GRS(evalName, data)
     4. \-GerminaR::evalDays(evalName, data)
     5. +-dplyr::select(data, starts_with(colnames(data), evalName))
     6. \-dplyr:::select.data.frame(data, starts_with(colnames(data), evalName))
     7. \-tidyselect::vars_select(tbl_vars(.data), !!!enquos(...))
     8. \-tidyselect:::eval_select_impl(...)
     9. \-tidyselect:::with_subscript_errors(...)
    <parent: error/simpleError>
    Backtrace:
    x
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘GerminaR.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 67-70 (GerminaR.Rmd)
    Error: processing vignette 'GerminaR.Rmd' failed with diagnostics:
    argument is not interpretable as logical
    --- failed re-building ‘GerminaR.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘GerminaR.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 67-70 (GerminaR.Rmd)
    Error: processing vignette 'GerminaR.Rmd' failed with diagnostics:
    argument is not interpretable as logical
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64