Last updated on 2020-02-15 22:50:41 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 29.37 | 129.20 | 158.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 20.57 | 95.52 | 116.09 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 205.36 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 197.75 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.0 | 64.00 | 195.00 | 259.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.0 | 88.00 | 254.00 | 342.00 | OK | |
| r-patched-linux-x86_64 | 1.0 | 24.31 | 112.20 | 136.51 | OK | |
| r-patched-solaris-x86 | 1.0 | 222.60 | ERROR | |||
| r-release-linux-x86_64 | 1.0 | 21.84 | 111.86 | 133.70 | OK | |
| r-release-windows-ix86+x86_64 | 1.0 | 57.00 | 178.00 | 235.00 | OK | |
| r-release-osx-x86_64 | 1.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0 | 51.00 | 168.00 | 219.00 | OK | |
| r-oldrel-osx-x86_64 | 1.0 | OK |
Version: 1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Seurat’
Flavor: r-patched-solaris-x86
Version: 1.0
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘Seurat’
Flavor: r-patched-solaris-x86
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘diem-Ex.R’ failed
The error most likely occurred in:
> ### Name: convert_to_seurat
> ### Title: Convert an SCE object to Seurat
> ### Aliases: convert_to_seurat
>
> ### ** Examples
>
> mm_seur <- convert_to_seurat(x = mb_small,
+ targets = FALSE,
+ min.features = 500,
+ min.cells = 3,
+ project = mb_small@name)
Error: Package "Seurat" needed for convert_to_seurat. Please install.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘diem.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 305-311 (diem.Rmd)
Error: processing vignette 'diem.Rmd' failed with diagnostics:
Package "Seurat" needed for convert_to_seurat. Please install.
--- failed re-building ‘diem.Rmd’
SUMMARY: processing the following file failed:
‘diem.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86