Last updated on 2020-02-15 22:50:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.13 | 6.09 | 66.18 | 72.27 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.13 | 4.69 | 51.71 | 56.40 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.13 | 85.91 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.13 | 83.95 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.13 | 11.00 | 81.00 | 92.00 | NOTE | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.13 | 18.00 | 103.00 | 121.00 | NOTE | |
| r-patched-linux-x86_64 | 1.13 | 4.40 | 60.06 | 64.46 | NOTE | |
| r-patched-solaris-x86 | 1.13 | 112.90 | NOTE | |||
| r-release-linux-x86_64 | 1.13 | 4.19 | 59.50 | 63.69 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.13 | 11.00 | 73.00 | 84.00 | NOTE | |
| r-release-osx-x86_64 | 1.13 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.13 | 5.00 | 68.00 | 73.00 | ERROR | |
| r-oldrel-osx-x86_64 | 1.13 | NOTE |
Version: 1.13
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
'RBGL' 'graph' 'igraph'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.13
Check: R code for possible problems
Result: NOTE
convert_MITAB_to_edgeList: no visible global function definition for
'combn'
convert_edgeList_to_graph: no visible global function definition for
'ftM2graphNEL'
convert_edgeList_to_graph: no visible global function definition for
'graph.data.frame'
convert_graph_to_edgeList: no visible global function definition for
'edgeWeights'
convert_graph_to_edgeList: no visible global function definition for
'get.edgelist'
convert_graph_to_edgeList: no visible global function definition for
'E'
create_id_conversion_table: no visible global function definition for
'write.table'
get_irefindex: no visible global function definition for 'read.table'
get_irefindex: no visible global function definition for
'download.file'
get_irefindex: no visible global function definition for 'unzip'
summary_graph: no visible global function definition for
'connectedComp'
summary_graph: no visible global function definition for 'subGraph'
summary_graph: no visible global function definition for 'clusters'
summary_graph: no visible global function definition for 'subgraph'
summary_graph: no visible global function definition for 'plot'
summary_graph: no visible binding for global variable
'layout.fruchterman.reingold'
Undefined global functions or variables:
E clusters combn connectedComp download.file edgeWeights ftM2graphNEL
get.edgelist graph.data.frame layout.fruchterman.reingold plot
read.table subGraph subgraph unzip write.table
Consider adding
importFrom("graphics", "plot")
importFrom("utils", "combn", "download.file", "read.table", "unzip",
"write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.13
Check: examples
Result: ERROR
Running examples in 'iRefR-Ex.R' failed
The error most likely occurred in:
> ### Name: convert_MITAB_to_edgeList
> ### Title: Convert MITAB format to edgeList format
> ### Aliases: convert_MITAB_to_edgeList
>
> ### ** Examples
>
> ## get tables
> irefindex_curr_ecoli = get_irefindex("562", "13.0", tempdir())
Downloading iRefIndex file...
trying URL 'http://irefindex.org/download/irefindex/data/archive/release_13.0/psi_mitab/MITAB2.6/562.mitab.08122013.txt.zip'
Warning in download.file(url, destfile = zipfile) :
InternetOpenUrl failed: 'Eine Umleitungsanforderung ändert eine nicht sichere in eine sichere Verbindung.'
Error in download.file(url, destfile = zipfile) :
cannot open URL 'http://irefindex.org/download/irefindex/data/archive/release_13.0/psi_mitab/MITAB2.6/562.mitab.08122013.txt.zip'
Calls: get_irefindex -> download.file
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64