Last updated on 2020-02-16 08:47:23 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.1 | 14.46 | 157.57 | 172.03 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.1 | 12.11 | 148.64 | 160.75 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.1.1 | 191.24 | WARN | |||
| r-devel-windows-ix86+x86_64 | 2.1.1 | 27.00 | 173.00 | 200.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 2.1.1 | 43.00 | 202.00 | 245.00 | WARN | |
| r-patched-linux-x86_64 | 2.1.1 | 12.14 | 130.86 | 143.00 | OK | |
| r-patched-solaris-x86 | 2.1.1 | 217.40 | NOTE | |||
| r-release-linux-x86_64 | 2.1.1 | 11.86 | 135.50 | 147.36 | OK | |
| r-release-windows-ix86+x86_64 | 2.1.1 | 25.00 | 154.00 | 179.00 | OK | |
| r-release-osx-x86_64 | 2.1.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 2.1.1 | 18.00 | 114.00 | 132.00 | WARN | |
| r-oldrel-osx-x86_64 | 2.1.1 | WARN |
Version: 2.1.1
Check: package dependencies
Result: WARN
Imports includes 35 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable. Move as many as possible to Suggests and
use conditionally.
Requires orphaned package: ‘gplots’
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.1.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘BiocManager’ ‘DT’ ‘GEOmetadb’ ‘RMySQL’ ‘RSQLite’ ‘gplots’ ‘pheatmap’
‘readr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 2.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'MetaIntegrator.Rmd' using rmarkdown
Quitting from lines 128-129 (MetaIntegrator.Rmd)
Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
there is no package called 'magick'
--- failed re-building 'MetaIntegrator.Rmd'
--- re-building 'MetaIntegratorRealExample.Rmd' using rmarkdown_notangle
--- finished re-building 'MetaIntegratorRealExample.Rmd'
SUMMARY: processing the following file failed:
'MetaIntegrator.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8
Version: 2.1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BiocStyle’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 2.1.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘MetaIntegrator.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 26-27 (MetaIntegrator.Rmd)
Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
there is no package called 'BiocStyle'
--- failed re-building ‘MetaIntegrator.Rmd’
--- re-building ‘MetaIntegratorRealExample.Rmd’ using rmarkdown_notangle
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘MetaIntegratorRealExample.Rmd’
SUMMARY: processing the following file failed:
‘MetaIntegrator.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 2.1.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Quitting from lines 128-129 (MetaIntegrator.Rmd)
Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
there is no package called 'magick'
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 2.1.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 26-27 (MetaIntegrator.Rmd)
Error: processing vignette 'MetaIntegrator.Rmd' failed with diagnostics:
there is no package called 'BiocStyle'
Execution halted
Flavor: r-oldrel-osx-x86_64