Last updated on 2020-02-19 10:48:46 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | 9.85 | 45.08 | 54.93 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.4 | 7.59 | 34.29 | 41.88 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 64.51 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 63.76 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.4 | 15.00 | 56.00 | 71.00 | NOTE | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.4 | 22.00 | 80.00 | 102.00 | NOTE | |
| r-patched-linux-x86_64 | 1.4 | 7.21 | 42.99 | 50.20 | NOTE | |
| r-patched-solaris-x86 | 1.4 | 83.60 | NOTE | |||
| r-release-linux-x86_64 | 1.4 | 7.03 | 43.90 | 50.93 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.4 | 13.00 | 55.00 | 68.00 | NOTE | |
| r-release-osx-x86_64 | 1.4 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.4 | 10.00 | 53.00 | 63.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.4 | NOTE |
Version: 1.4
Check: R code for possible problems
Result: NOTE
BCLTB2zm: no visible global function definition for 'flush.console'
BCLTB2zm: no visible global function definition for 'runif'
BCLTB2zm: no visible global function definition for 'rgamma'
BCLTB2zm: no visible global function definition for 'rexp'
BCLTB2zm: no visible global function definition for 'rnorm'
BCLTB2zm: no visible global function definition for 'rt'
BCLTB2zm: no visible global function definition for 'rweibull'
BCLTB2zm: no visible global function definition for 'rchisq'
BCLTB2zm: no visible global function definition for 'rcauchy'
BCLTB2zm: no visible global function definition for 'dlnorm'
BCLTB2zm: no visible global function definition for 'nlminb'
IMISB2zm: no visible global function definition for 'flush.console'
IMISB2zm: no visible global function definition for 'runif'
IMISB2zm: no visible global function definition for 'rgamma'
IMISB2zm: no visible global function definition for 'rexp'
IMISB2zm: no visible global function definition for 'rnorm'
IMISB2zm: no visible global function definition for 'rt'
IMISB2zm: no visible global function definition for 'rweibull'
IMISB2zm: no visible global function definition for 'rchisq'
IMISB2zm: no visible global function definition for 'rcauchy'
IMISB2zm: no visible global function definition for 'dlnorm'
IMISB2zm: no visible global function definition for 'plot'
IMISB2zm: no visible global function definition for 'box'
IMISB2zm: no visible global function definition for 'abline'
IMISB2zm: no visible global function definition for 'axis'
IMISB2zm: no visible global function definition for 'cov'
IMISB2zm: no visible global function definition for 'cov.wt'
IMISB2zm: no visible global function definition for 'segments'
IMISB2zm: no visible global function definition for 'points'
MCMCB2zm: no visible global function definition for 'flush.console'
MCMCB2zm: no visible global function definition for 'runif'
MCMCB2zm: no visible global function definition for 'rgamma'
MCMCB2zm: no visible global function definition for 'rexp'
MCMCB2zm: no visible global function definition for 'rnorm'
MCMCB2zm: no visible global function definition for 'rt'
MCMCB2zm: no visible global function definition for 'rweibull'
MCMCB2zm: no visible global function definition for 'rchisq'
MCMCB2zm: no visible global function definition for 'rcauchy'
MCMCB2zm: no visible global function definition for 'dlnorm'
MCMCB2zm: no visible global function definition for 'nlminb'
MCMCB2zm: no visible global function definition for 'cov'
MCMCB2zm: no visible global function definition for 'txtProgressBar'
MCMCB2zm: no visible global function definition for 'setTxtProgressBar'
SIRB2zm: no visible global function definition for 'flush.console'
SIRB2zm: no visible global function definition for 'runif'
SIRB2zm: no visible global function definition for 'rgamma'
SIRB2zm: no visible global function definition for 'rexp'
SIRB2zm: no visible global function definition for 'rnorm'
SIRB2zm: no visible global function definition for 'rt'
SIRB2zm: no visible global function definition for 'rweibull'
SIRB2zm: no visible global function definition for 'rchisq'
SIRB2zm: no visible global function definition for 'rcauchy'
SIRB2zm: no visible global function definition for 'dlnorm'
SIRB2zm: no visible global function definition for 'var'
apply_pb: no visible global function definition for 'txtProgressBar'
apply_pb : wrapper: no visible global function definition for
'setTxtProgressBar'
logpost: no visible global function definition for 'dunif'
logpost: no visible global function definition for 'dgamma'
logpost: no visible global function definition for 'dexp'
logpost: no visible global function definition for 'dnorm'
logpost: no visible global function definition for 'dt'
logpost: no visible global function definition for 'dweibull'
logpost: no visible global function definition for 'dchisq'
logpost: no visible global function definition for 'dcauchy'
logpost: no visible global function definition for 'dlnorm'
logprior: no visible global function definition for 'dunif'
logprior: no visible global function definition for 'dgamma'
logprior: no visible global function definition for 'dexp'
logprior: no visible global function definition for 'dnorm'
logprior: no visible global function definition for 'dt'
logprior: no visible global function definition for 'dweibull'
logprior: no visible global function definition for 'dchisq'
logprior: no visible global function definition for 'dcauchy'
logprior: no visible global function definition for 'dlnorm'
plot.bclt: no visible binding for global variable 'quantile'
plot.bclt: no visible global function definition for 'plot'
plot.bclt: no visible global function definition for 'lines'
plot.bclt: no visible global function definition for 'legend'
plot.bclt: no visible global function definition for 'devAskNewPage'
plot.bclt: no visible global function definition for 'par'
plot.bclt: no visible global function definition for 'hist'
plot.bclt: no visible global function definition for 'density'
plot.bclt: no visible global function definition for 'dnorm'
plot.bclt: no visible global function definition for 'sd'
plot.bclt: no visible global function definition for 'curve'
plot.imis: no visible binding for global variable 'quantile'
plot.imis: no visible global function definition for 'plot'
plot.imis: no visible global function definition for 'lines'
plot.imis: no visible global function definition for 'legend'
plot.imis: no visible global function definition for 'devAskNewPage'
plot.imis: no visible global function definition for 'par'
plot.imis: no visible global function definition for 'hist'
plot.imis: no visible global function definition for 'density'
plot.imis: no visible global function definition for 'dnorm'
plot.imis: no visible global function definition for 'sd'
plot.imis: no visible global function definition for 'curve'
plot.mcmc: no visible binding for global variable 'quantile'
plot.mcmc: no visible global function definition for 'plot'
plot.mcmc: no visible global function definition for 'lines'
plot.mcmc: no visible global function definition for 'legend'
plot.mcmc: no visible global function definition for 'devAskNewPage'
plot.mcmc: no visible global function definition for 'par'
plot.mcmc: no visible global function definition for 'hist'
plot.mcmc: no visible global function definition for 'density'
plot.mcmc: no visible global function definition for 'dnorm'
plot.mcmc: no visible global function definition for 'sd'
plot.mcmc: no visible global function definition for 'curve'
plot.mcmc: no visible global function definition for 'ts.plot'
plot.mcmc: no visible global function definition for 'acf'
plot.sir: no visible binding for global variable 'quantile'
plot.sir: no visible global function definition for 'plot'
plot.sir: no visible global function definition for 'lines'
plot.sir: no visible global function definition for 'legend'
plot.sir: no visible global function definition for 'devAskNewPage'
plot.sir: no visible global function definition for 'par'
plot.sir: no visible global function definition for 'hist'
plot.sir: no visible global function definition for 'density'
plot.sir: no visible global function definition for 'dnorm'
plot.sir: no visible global function definition for 'sd'
plot.sir: no visible global function definition for 'curve'
ploteps: no visible binding for global variable 'quantile'
ploteps: no visible global function definition for 'postscript'
ploteps: no visible global function definition for 'plot'
ploteps: no visible global function definition for 'lines'
ploteps: no visible global function definition for 'legend'
ploteps: no visible global function definition for 'dev.off'
ploteps: no visible global function definition for 'par'
ploteps: no visible global function definition for 'hist'
ploteps: no visible global function definition for 'density'
ploteps: no visible global function definition for 'dnorm'
ploteps: no visible global function definition for 'sd'
ploteps: no visible global function definition for 'curve'
ploteps: no visible global function definition for 'ts.plot'
ploteps: no visible global function definition for 'acf'
plotjpeg: no visible binding for global variable 'quantile'
plotjpeg: no visible global function definition for 'postscript'
plotjpeg: no visible global function definition for 'plot'
plotjpeg: no visible global function definition for 'lines'
plotjpeg: no visible global function definition for 'legend'
plotjpeg: no visible global function definition for 'dev.off'
plotjpeg: no visible global function definition for 'par'
plotjpeg: no visible global function definition for 'hist'
plotjpeg: no visible global function definition for 'density'
plotjpeg: no visible global function definition for 'dnorm'
plotjpeg: no visible global function definition for 'sd'
plotjpeg: no visible global function definition for 'curve'
plotjpeg: no visible global function definition for 'ts.plot'
plotjpeg: no visible global function definition for 'acf'
plotpdf: no visible binding for global variable 'quantile'
plotpdf: no visible global function definition for 'pdf'
plotpdf: no visible global function definition for 'plot'
plotpdf: no visible global function definition for 'lines'
plotpdf: no visible global function definition for 'legend'
plotpdf: no visible global function definition for 'dev.off'
plotpdf: no visible global function definition for 'par'
plotpdf: no visible global function definition for 'hist'
plotpdf: no visible global function definition for 'density'
plotpdf: no visible global function definition for 'dnorm'
plotpdf: no visible global function definition for 'sd'
plotpdf: no visible global function definition for 'curve'
plotpdf: no visible global function definition for 'ts.plot'
plotpdf: no visible global function definition for 'acf'
plotpng: no visible binding for global variable 'quantile'
plotpng: no visible global function definition for 'png'
plotpng: no visible global function definition for 'plot'
plotpng: no visible global function definition for 'lines'
plotpng: no visible global function definition for 'legend'
plotpng: no visible global function definition for 'dev.off'
plotpng: no visible global function definition for 'par'
plotpng: no visible global function definition for 'hist'
plotpng: no visible global function definition for 'density'
plotpng: no visible global function definition for 'dnorm'
plotpng: no visible global function definition for 'sd'
plotpng: no visible global function definition for 'curve'
plotpng: no visible global function definition for 'ts.plot'
plotpng: no visible global function definition for 'acf'
plotps: no visible binding for global variable 'quantile'
plotps: no visible global function definition for 'postscript'
plotps: no visible global function definition for 'plot'
plotps: no visible global function definition for 'lines'
plotps: no visible global function definition for 'legend'
plotps: no visible global function definition for 'dev.off'
plotps: no visible global function definition for 'par'
plotps: no visible global function definition for 'hist'
plotps: no visible global function definition for 'density'
plotps: no visible global function definition for 'dnorm'
plotps: no visible global function definition for 'sd'
plotps: no visible global function definition for 'curve'
plotps: no visible global function definition for 'ts.plot'
plotps: no visible global function definition for 'acf'
predY: no visible global function definition for 'rnorm'
rwish: no visible global function definition for 'rchisq'
rwish: no visible global function definition for 'rnorm'
summary.bclt: no visible global function definition for 'cov'
summary.imis: no visible global function definition for 'cov'
summary.mcmc: no visible global function definition for 'cov'
summary.out: no visible global function definition for 'quantile'
summary.out: no visible global function definition for 'sd'
summary.sir: no visible global function definition for 'cov'
Undefined global functions or variables:
abline acf axis box cov cov.wt curve dcauchy dchisq density dev.off
devAskNewPage dexp dgamma dlnorm dnorm dt dunif dweibull
flush.console hist legend lines nlminb par pdf plot png points
postscript quantile rcauchy rchisq rexp rgamma rnorm rt runif
rweibull sd segments setTxtProgressBar ts.plot txtProgressBar var
Consider adding
importFrom("grDevices", "dev.off", "devAskNewPage", "pdf", "png",
"postscript")
importFrom("graphics", "abline", "axis", "box", "curve", "hist",
"legend", "lines", "par", "plot", "points", "segments")
importFrom("stats", "acf", "cov", "cov.wt", "dcauchy", "dchisq",
"density", "dexp", "dgamma", "dlnorm", "dnorm", "dt",
"dunif", "dweibull", "nlminb", "quantile", "rcauchy",
"rchisq", "rexp", "rgamma", "rnorm", "rt", "runif",
"rweibull", "sd", "ts.plot", "var")
importFrom("utils", "flush.console", "setTxtProgressBar",
"txtProgressBar")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.4
Check: examples
Result: ERROR
Running examples in 'B2Z-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: B2ZM_IMIS
> ### Title: Bayesian Two-Zone Models: using IMIS sampler
> ### Aliases: B2ZM_IMIS
> ### Keywords: models
>
> ### ** Examples
>
> ##################
> #Dependent Model#
> ################
>
> #Data 1: 100 simulated concentrations during the times
> #between 0 and 4, using the parameters Beta = 5, Q = 13.8,
> #G = 351.5, VN = pi*10^-3, VF = 3.8, Tau_N = 1,
> #Tau_NF = 0.5 and Tau_F = 0.64.
>
> data(ex1)
>
> r <- B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)",
+ priorQ="unif(11,17)", priorG = "unif(281,482)", S = diag(10,2),
+ v = 4, VN = pi*10^-3, VF = 3.8, N0 = 500, B = 50, M = 250,
+ it.max = 4)
1 - Initial Stage...
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| | 0% ----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
B2Z
--- call from context ---
is.pos.def(W)
--- call from argument ---
if (class(val) == "try-error") return(FALSE) else return(TRUE)
--- R stacktrace ---
where 1: is.pos.def(W)
where 2: logdiwish(W, v, S)
where 3: logprior(parms, indep, Y, times, VN, VF, n, indBeta, aBeta, bBeta,
indQ, aQ, bQ, indG, aG, bG, S, v, tauN_sh, tauN_sc, tauF_sh,
tauF_sc)
where 4: FUN(...)
where 5: FUN(newX[, i], ...)
where 6: apply(X, MARGIN, wrapper, ...)
where 7: apply_pb(params_transf, 1, logprior_transf, indep = indep, Y = Y,
times = times, VN = VN, VF = VF, n = n, indBeta = indBeta,
aBeta = aBeta, bBeta = bBeta, rangeBeta = rangeBeta, indQ = indQ,
aQ = aQ, bQ = bQ, rangeQ = rangeQ, indG = indG, aG = aG,
bG = bG, rangeG = rangeG, S = S, v = v, tauN_sh = tauN_sh,
tauN_sc = tauN_sc, tauF_sh = tauF_sh, tauF_sc = tauF_sc)
where 8: IMISB2zm(N0, B, M, it.max, S, v, tauN.sh, tauN.sc, tauF.sh, tauF.sc,
VN, VF, times, Y, indep, cred, indBeta, aBeta, bBeta, indQ,
aQ, bQ, indG, aG, bG)
where 9: B2ZM(data = data, priorBeta = priorBeta, priorQ = priorQ, priorG = priorG,
v = v, S = S, tauN.sh = tauN.sh, tauN.sc = tauN.sc, tauF.sh = tauF.sh,
tauF.sc = tauF.sc, VN = VN, VF = VF, indep.model = indep.model,
cred = 95, sampler = "IMIS", imis.control = list(N0 = N0,
B = B, M = M, it.max = it.max), figures = figures)
where 10: B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)", priorQ = "unif(11,17)",
priorG = "unif(281,482)", S = diag(10, 2), v = 4, VN = pi *
10^-3, VF = 3.8, N0 = 500, B = 50, M = 250, it.max = 4)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (mat)
{
val = try(chol(mat), silent = TRUE)
if (class(val) == "try-error")
return(FALSE)
else return(TRUE)
}
<bytecode: 0x2def180>
<environment: namespace:B2Z>
--- function search by body ---
Function is.pos.def in namespace B2Z has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(val) == "try-error") return(FALSE) else return(TRUE) :
the condition has length > 1
Calls: B2ZM_IMIS ... apply -> FUN -> FUN -> logprior -> logdiwish -> is.pos.def
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘B2Z-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: B2ZM_IMIS
> ### Title: Bayesian Two-Zone Models: using IMIS sampler
> ### Aliases: B2ZM_IMIS
> ### Keywords: models
>
> ### ** Examples
>
> ##################
> #Dependent Model#
> ################
>
> #Data 1: 100 simulated concentrations during the times
> #between 0 and 4, using the parameters Beta = 5, Q = 13.8,
> #G = 351.5, VN = pi*10^-3, VF = 3.8, Tau_N = 1,
> #Tau_NF = 0.5 and Tau_F = 0.64.
>
> data(ex1)
>
> r <- B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)",
+ priorQ="unif(11,17)", priorG = "unif(281,482)", S = diag(10,2),
+ v = 4, VN = pi*10^-3, VF = 3.8, N0 = 500, B = 50, M = 250,
+ it.max = 4)
1 - Initial Stage...
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| | 0% ----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
B2Z
--- call from context ---
is.pos.def(W)
--- call from argument ---
if (class(val) == "try-error") return(FALSE) else return(TRUE)
--- R stacktrace ---
where 1: is.pos.def(W)
where 2: logdiwish(W, v, S)
where 3: logprior(parms, indep, Y, times, VN, VF, n, indBeta, aBeta, bBeta,
indQ, aQ, bQ, indG, aG, bG, S, v, tauN_sh, tauN_sc, tauF_sh,
tauF_sc)
where 4: FUN(...)
where 5: FUN(newX[, i], ...)
where 6: apply(X, MARGIN, wrapper, ...)
where 7: apply_pb(params_transf, 1, logprior_transf, indep = indep, Y = Y,
times = times, VN = VN, VF = VF, n = n, indBeta = indBeta,
aBeta = aBeta, bBeta = bBeta, rangeBeta = rangeBeta, indQ = indQ,
aQ = aQ, bQ = bQ, rangeQ = rangeQ, indG = indG, aG = aG,
bG = bG, rangeG = rangeG, S = S, v = v, tauN_sh = tauN_sh,
tauN_sc = tauN_sc, tauF_sh = tauF_sh, tauF_sc = tauF_sc)
where 8: IMISB2zm(N0, B, M, it.max, S, v, tauN.sh, tauN.sc, tauF.sh, tauF.sc,
VN, VF, times, Y, indep, cred, indBeta, aBeta, bBeta, indQ,
aQ, bQ, indG, aG, bG)
where 9: B2ZM(data = data, priorBeta = priorBeta, priorQ = priorQ, priorG = priorG,
v = v, S = S, tauN.sh = tauN.sh, tauN.sc = tauN.sc, tauF.sh = tauF.sh,
tauF.sc = tauF.sc, VN = VN, VF = VF, indep.model = indep.model,
cred = 95, sampler = "IMIS", imis.control = list(N0 = N0,
B = B, M = M, it.max = it.max), figures = figures)
where 10: B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)", priorQ = "unif(11,17)",
priorG = "unif(281,482)", S = diag(10, 2), v = 4, VN = pi *
10^-3, VF = 3.8, N0 = 500, B = 50, M = 250, it.max = 4)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (mat)
{
val = try(chol(mat), silent = TRUE)
if (class(val) == "try-error")
return(FALSE)
else return(TRUE)
}
<bytecode: 0x5588a07d0d88>
<environment: namespace:B2Z>
--- function search by body ---
Function is.pos.def in namespace B2Z has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(val) == "try-error") return(FALSE) else return(TRUE) :
the condition has length > 1
Calls: B2ZM_IMIS ... apply -> FUN -> FUN -> logprior -> logdiwish -> is.pos.def
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘B2Z-Ex.R’ failed
The error most likely occurred in:
> ### Name: B2ZM_IMIS
> ### Title: Bayesian Two-Zone Models: using IMIS sampler
> ### Aliases: B2ZM_IMIS
> ### Keywords: models
>
> ### ** Examples
>
> ##################
> #Dependent Model#
> ################
>
> #Data 1: 100 simulated concentrations during the times
> #between 0 and 4, using the parameters Beta = 5, Q = 13.8,
> #G = 351.5, VN = pi*10^-3, VF = 3.8, Tau_N = 1,
> #Tau_NF = 0.5 and Tau_F = 0.64.
>
> data(ex1)
>
> r <- B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)",
+ priorQ="unif(11,17)", priorG = "unif(281,482)", S = diag(10,2),
+ v = 4, VN = pi*10^-3, VF = 3.8, N0 = 500, B = 50, M = 250,
+ it.max = 4)
1 - Initial Stage...
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| | 0% ----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
B2Z
--- call from context ---
is.pos.def(W)
--- call from argument ---
if (class(val) == "try-error") return(FALSE) else return(TRUE)
--- R stacktrace ---
where 1: is.pos.def(W)
where 2: logdiwish(W, v, S)
where 3: logprior(parms, indep, Y, times, VN, VF, n, indBeta, aBeta, bBeta,
indQ, aQ, bQ, indG, aG, bG, S, v, tauN_sh, tauN_sc, tauF_sh,
tauF_sc)
where 4: FUN(...)
where 5: FUN(newX[, i], ...)
where 6: apply(X, MARGIN, wrapper, ...)
where 7: apply_pb(params_transf, 1, logprior_transf, indep = indep, Y = Y,
times = times, VN = VN, VF = VF, n = n, indBeta = indBeta,
aBeta = aBeta, bBeta = bBeta, rangeBeta = rangeBeta, indQ = indQ,
aQ = aQ, bQ = bQ, rangeQ = rangeQ, indG = indG, aG = aG,
bG = bG, rangeG = rangeG, S = S, v = v, tauN_sh = tauN_sh,
tauN_sc = tauN_sc, tauF_sh = tauF_sh, tauF_sc = tauF_sc)
where 8: IMISB2zm(N0, B, M, it.max, S, v, tauN.sh, tauN.sc, tauF.sh, tauF.sc,
VN, VF, times, Y, indep, cred, indBeta, aBeta, bBeta, indQ,
aQ, bQ, indG, aG, bG)
where 9: B2ZM(data = data, priorBeta = priorBeta, priorQ = priorQ, priorG = priorG,
v = v, S = S, tauN.sh = tauN.sh, tauN.sc = tauN.sc, tauF.sh = tauF.sh,
tauF.sc = tauF.sc, VN = VN, VF = VF, indep.model = indep.model,
cred = 95, sampler = "IMIS", imis.control = list(N0 = N0,
B = B, M = M, it.max = it.max), figures = figures)
where 10: B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)", priorQ = "unif(11,17)",
priorG = "unif(281,482)", S = diag(10, 2), v = 4, VN = pi *
10^-3, VF = 3.8, N0 = 500, B = 50, M = 250, it.max = 4)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (mat)
{
val = try(chol(mat), silent = TRUE)
if (class(val) == "try-error")
return(FALSE)
else return(TRUE)
}
<bytecode: 0x354bb18>
<environment: namespace:B2Z>
--- function search by body ---
Function is.pos.def in namespace B2Z has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(val) == "try-error") return(FALSE) else return(TRUE) :
the condition has length > 1
Calls: B2ZM_IMIS ... apply -> FUN -> FUN -> logprior -> logdiwish -> is.pos.def
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.4
Check: examples
Result: ERROR
Running examples in ‘B2Z-Ex.R’ failed
The error most likely occurred in:
> ### Name: B2ZM_IMIS
> ### Title: Bayesian Two-Zone Models: using IMIS sampler
> ### Aliases: B2ZM_IMIS
> ### Keywords: models
>
> ### ** Examples
>
> ##################
> #Dependent Model#
> ################
>
> #Data 1: 100 simulated concentrations during the times
> #between 0 and 4, using the parameters Beta = 5, Q = 13.8,
> #G = 351.5, VN = pi*10^-3, VF = 3.8, Tau_N = 1,
> #Tau_NF = 0.5 and Tau_F = 0.64.
>
> data(ex1)
>
> r <- B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)",
+ priorQ="unif(11,17)", priorG = "unif(281,482)", S = diag(10,2),
+ v = 4, VN = pi*10^-3, VF = 3.8, N0 = 500, B = 50, M = 250,
+ it.max = 4)
1 - Initial Stage...
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| | 0% ----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
B2Z
--- call from context ---
is.pos.def(W)
--- call from argument ---
if (class(val) == "try-error") return(FALSE) else return(TRUE)
--- R stacktrace ---
where 1: is.pos.def(W)
where 2: logdiwish(W, v, S)
where 3: logprior(parms, indep, Y, times, VN, VF, n, indBeta, aBeta, bBeta,
indQ, aQ, bQ, indG, aG, bG, S, v, tauN_sh, tauN_sc, tauF_sh,
tauF_sc)
where 4: FUN(...)
where 5: FUN(newX[, i], ...)
where 6: apply(X, MARGIN, wrapper, ...)
where 7: apply_pb(params_transf, 1, logprior_transf, indep = indep, Y = Y,
times = times, VN = VN, VF = VF, n = n, indBeta = indBeta,
aBeta = aBeta, bBeta = bBeta, rangeBeta = rangeBeta, indQ = indQ,
aQ = aQ, bQ = bQ, rangeQ = rangeQ, indG = indG, aG = aG,
bG = bG, rangeG = rangeG, S = S, v = v, tauN_sh = tauN_sh,
tauN_sc = tauN_sc, tauF_sh = tauF_sh, tauF_sc = tauF_sc)
where 8: IMISB2zm(N0, B, M, it.max, S, v, tauN.sh, tauN.sc, tauF.sh, tauF.sc,
VN, VF, times, Y, indep, cred, indBeta, aBeta, bBeta, indQ,
aQ, bQ, indG, aG, bG)
where 9: B2ZM(data = data, priorBeta = priorBeta, priorQ = priorQ, priorG = priorG,
v = v, S = S, tauN.sh = tauN.sh, tauN.sc = tauN.sc, tauF.sh = tauF.sh,
tauF.sc = tauF.sc, VN = VN, VF = VF, indep.model = indep.model,
cred = 95, sampler = "IMIS", imis.control = list(N0 = N0,
B = B, M = M, it.max = it.max), figures = figures)
where 10: B2ZM_IMIS(data = ex1, priorBeta = "unif(0,10)", priorQ = "unif(11,17)",
priorG = "unif(281,482)", S = diag(10, 2), v = 4, VN = pi *
10^-3, VF = 3.8, N0 = 500, B = 50, M = 250, it.max = 4)
--- value of length: 2 type: logical ---
[1] FALSE FALSE
--- function from context ---
function (mat)
{
val = try(chol(mat), silent = TRUE)
if (class(val) == "try-error")
return(FALSE)
else return(TRUE)
}
<bytecode: 0x4654e20>
<environment: namespace:B2Z>
--- function search by body ---
Function is.pos.def in namespace B2Z has this body.
----------- END OF FAILURE REPORT --------------
Error in if (class(val) == "try-error") return(FALSE) else return(TRUE) :
the condition has length > 1
Calls: B2ZM_IMIS ... apply -> FUN -> FUN -> logprior -> logdiwish -> is.pos.def
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc