Last updated on 2020-02-20 05:48:20 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 10.13 | 152.00 | 162.13 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 7.85 | 116.36 | 124.21 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 198.75 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 186.82 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.0.2 | 17.00 | 143.00 | 160.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.0.2 | 24.00 | 204.00 | 228.00 | OK | |
| r-patched-linux-x86_64 | 1.0.2 | 8.47 | 135.99 | 144.46 | OK | |
| r-patched-solaris-x86 | 1.0.2 | 852.30 | ERROR | |||
| r-release-linux-x86_64 | 1.0.2 | 8.60 | 135.55 | 144.15 | OK | |
| r-release-windows-ix86+x86_64 | 1.0.2 | 16.00 | 134.00 | 150.00 | OK | |
| r-release-osx-x86_64 | 1.0.2 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.2 | 8.00 | 127.00 | 135.00 | OK | |
| r-oldrel-osx-x86_64 | 1.0.2 | OK |
Version: 1.0.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘uwot’
Flavor: r-patched-solaris-x86
Version: 1.0.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘uwot’
Flavor: r-patched-solaris-x86
Version: 1.0.2
Check: examples
Result: ERROR
Running examples in ‘dyndimred-Ex.R’ failed
The error most likely occurred in:
> ### Name: dimred_umap
> ### Title: UMAP
> ### Aliases: dimred_umap
>
> ### ** Examples
>
> library(Matrix)
> dataset <- abs(Matrix::rsparsematrix(100, 100, .5))
> dimred_umap(dataset, ndim = 3)
Installing uwot
Installing 1 packages: uwot
Installing package into ‘/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223’
(as ‘lib’ is unspecified)
also installing the dependencies ‘sitmo’, ‘FNN’, ‘RcppAnnoy’, ‘RcppProgress’, ‘dqrng’
trying URL 'http://cran.rstudio.com/src/contrib/sitmo_2.0.1.tar.gz'
Content type 'application/x-gzip' length 124658 bytes (121 KB)
==================================================
downloaded 121 KB
trying URL 'http://cran.rstudio.com/src/contrib/FNN_1.1.3.tar.gz'
Content type 'application/x-gzip' length 78492 bytes (76 KB)
==================================================
downloaded 76 KB
trying URL 'http://cran.rstudio.com/src/contrib/RcppAnnoy_0.0.14.tar.gz'
Content type 'application/x-gzip' length 439993 bytes (429 KB)
==================================================
downloaded 429 KB
trying URL 'http://cran.rstudio.com/src/contrib/RcppProgress_0.4.2.tar.gz'
Content type 'application/x-gzip' length 12077 bytes (11 KB)
==================================================
downloaded 11 KB
trying URL 'http://cran.rstudio.com/src/contrib/dqrng_0.2.1.tar.gz'
Content type 'application/x-gzip' length 73541 bytes (71 KB)
==================================================
downloaded 71 KB
trying URL 'http://cran.rstudio.com/src/contrib/uwot_0.1.5.tar.gz'
Content type 'application/x-gzip' length 81034 bytes (79 KB)
==================================================
downloaded 79 KB
* installing *source* package ‘sitmo’ ...
** package ‘sitmo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c RcppExports.cpp -o RcppExports.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c sitmo_demo.cpp -o sitmo_demo.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c sitmo_parallel.cpp -o sitmo_parallel.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c sitmo_runif.cpp -o sitmo_runif.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -G -L/usr/local/lib -o sitmo.so RcppExports.o sitmo_demo.o sitmo_parallel.o sitmo_runif.o -L/home/ripley/R/cc/lib -lRlapack -L/home/ripley/R/cc/lib -lRblas -R/home/ripley/developerstudio12.6/lib -lfsu /home/ripley/developerstudio12.6/lib/compilers/libsunquad.a -lsunmath -lmtsk -lm -xopenmp
CC: Warning: Optimizer level changed from 0 to 3 to support parallelized code.
installing to /tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/00LOCK-sitmo/00new/sitmo/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sitmo)
* installing *source* package ‘FNN’ ...
** package ‘FNN’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c ANN.cpp -o ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_ANN.cpp -o KNN_ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_correlation_distance.cpp -o KNN_correlation_distance.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_test.cpp -o KNN_cover_test.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_tree.cpp -o KNN_cover_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_mutual_information.cpp -o KNN_mutual_information.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_pr_search.cpp -o bd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_search.cpp -o bd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_tree.cpp -o bd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c brute.cpp -o brute.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init_FNN.c -o init_FNN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_dump.cpp -o kd_dump.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_pr_search.cpp -o kd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_search.cpp -o kd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_split.cpp -o kd_split.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_tree.cpp -o kd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_util.cpp -o kd_util.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c label_point.cpp -o label_point.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c perf.cpp -o perf.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -G -L/usr/local/lib -o FNN.so ANN.o KNN_ANN.o KNN_correlation_distance.o KNN_cover_test.o KNN_cover_tree.o KNN_mutual_information.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o init_FNN.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o label_point.o perf.o
rm -f *.o core
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c ANN.cpp -o ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_ANN.cpp -o KNN_ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_correlation_distance.cpp -o KNN_correlation_distance.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_test.cpp -o KNN_cover_test.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_tree.cpp -o KNN_cover_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_mutual_information.cpp -o KNN_mutual_information.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_pr_search.cpp -o bd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_search.cpp -o bd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_tree.cpp -o bd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c brute.cpp -o brute.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init_FNN.c -o init_FNN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_dump.cpp -o kd_dump.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_pr_search.cpp -o kd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_search.cpp -o kd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_split.cpp -o kd_split.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_tree.cpp -o kd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_util.cpp -o kd_util.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c label_point.cpp -o label_point.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c perf.cpp -o perf.o
installing to /tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/00LOCK-FNN/00new/FNN/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FNN)
* installing *source* package ‘RcppAnnoy’ ...
** package ‘RcppAnnoy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/Rcpp/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c annoy.cpp -o annoy.o
"../inst/include/annoylib.h", line 114: Error: Formal argument 1 of type char* in call to munmap(char*, unsigned) is being passed void*.
"../inst/include/annoylib.h", line 118: Error: Formal argument 1 of type char* in call to mmap(char*, unsigned, int, int, int, long) is being passed void*.
2 Error(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `annoy.o'
Current working directory /tmp/RtmpFbayjx/working_dir/RtmpIXayaP/R.INSTALL5203231e736e/RcppAnnoy/src
ERROR: compilation failed for package ‘RcppAnnoy’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/RcppAnnoy’
Warning in i.p(...) :
installation of package ‘RcppAnnoy’ had non-zero exit status
* installing *source* package ‘RcppProgress’ ...
** package ‘RcppProgress’ successfully unpacked and MD5 sums checked
** using staged installation
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppProgress)
* installing *source* package ‘dqrng’ ...
** package ‘dqrng’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/Rcpp/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/BH/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/sitmo/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c RcppExports.cpp -o RcppExports.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/Rcpp/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/BH/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/sitmo/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c dqrng.cpp -o dqrng.o
"dqrng.cpp", line 38: Error: Could not find a match for boost::random::uniform_real_distribution<double>::uniform_real_distribution({initializer list}) needed in .
"dqrng.cpp", line 40: Error: Could not find a match for boost::random::normal_distribution<double>::normal_distribution({initializer list}) needed in .
"dqrng.cpp", line 42: Error: Could not find a match for boost::random::exponential_distribution<double>::exponential_distribution({initializer list}) needed in .
"dqrng.cpp", line 220: Warning: "dqsample_num(double, double, bool, Rcpp::Nullable<Rcpp::Vector<14, PreserveStorage>>, int)" is expected to return a value.
3 Error(s) and 1 Warning(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `dqrng.o'
Current working directory /tmp/RtmpFbayjx/working_dir/RtmpVraiXZ/R.INSTALL678915955f64/dqrng/src
ERROR: compilation failed for package ‘dqrng’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/dqrng’
Warning in i.p(...) :
installation of package ‘dqrng’ had non-zero exit status
ERROR: dependencies ‘RcppAnnoy’, ‘dqrng’ are not available for package ‘uwot’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b3bf76223/uwot’
Warning in i.p(...) :
installation of package ‘uwot’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpFbayjx/working_dir/RtmpFIaav5/downloaded_packages’
Installed uwot
Loading required namespace: uwot
Failed with error: ‘there is no package called ‘uwot’’
Error in loadNamespace(name) : there is no package called ‘uwot’
Calls: dimred_umap ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [426s/570s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dyndimred)
> library(dynutils)
Attaching package: 'dynutils'
The following object is masked from 'package:testthat':
has_names
>
> test_check("dyndimred")
trying URL 'http://cran.rstudio.com/src/contrib/sitmo_2.0.1.tar.gz'
Content type 'application/x-gzip' length 124658 bytes (121 KB)
==================================================
downloaded 121 KB
trying URL 'http://cran.rstudio.com/src/contrib/FNN_1.1.3.tar.gz'
Content type 'application/x-gzip' length 78492 bytes (76 KB)
==================================================
downloaded 76 KB
trying URL 'http://cran.rstudio.com/src/contrib/RcppAnnoy_0.0.14.tar.gz'
Content type 'application/x-gzip' length 439993 bytes (429 KB)
==================================================
downloaded 429 KB
trying URL 'http://cran.rstudio.com/src/contrib/RcppProgress_0.4.2.tar.gz'
Content type 'application/x-gzip' length 12077 bytes (11 KB)
==================================================
downloaded 11 KB
trying URL 'http://cran.rstudio.com/src/contrib/dqrng_0.2.1.tar.gz'
Content type 'application/x-gzip' length 73541 bytes (71 KB)
==================================================
downloaded 71 KB
trying URL 'http://cran.rstudio.com/src/contrib/uwot_0.1.5.tar.gz'
Content type 'application/x-gzip' length 81034 bytes (79 KB)
==================================================
downloaded 79 KB
* installing *source* package ‘sitmo’ ...
** package ‘sitmo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c RcppExports.cpp -o RcppExports.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c sitmo_demo.cpp -o sitmo_demo.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c sitmo_parallel.cpp -o sitmo_parallel.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I/usr/local/include -xopenmp -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c sitmo_runif.cpp -o sitmo_runif.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -G -L/usr/local/lib -o sitmo.so RcppExports.o sitmo_demo.o sitmo_parallel.o sitmo_runif.o -L/home/ripley/R/cc/lib -lRlapack -L/home/ripley/R/cc/lib -lRblas -R/home/ripley/developerstudio12.6/lib -lfsu /home/ripley/developerstudio12.6/lib/compilers/libsunquad.a -lsunmath -lmtsk -lm -xopenmp
CC: Warning: Optimizer level changed from 0 to 3 to support parallelized code.
installing to /tmp/RtmpFbayjx/RLIBS_2e4b4da7816/00LOCK-sitmo/00new/sitmo/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sitmo)
* installing *source* package ‘FNN’ ...
** package ‘FNN’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c ANN.cpp -o ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_ANN.cpp -o KNN_ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_correlation_distance.cpp -o KNN_correlation_distance.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_test.cpp -o KNN_cover_test.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_tree.cpp -o KNN_cover_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_mutual_information.cpp -o KNN_mutual_information.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_pr_search.cpp -o bd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_search.cpp -o bd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_tree.cpp -o bd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c brute.cpp -o brute.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init_FNN.c -o init_FNN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_dump.cpp -o kd_dump.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_pr_search.cpp -o kd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_search.cpp -o kd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_split.cpp -o kd_split.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_tree.cpp -o kd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_util.cpp -o kd_util.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c label_point.cpp -o label_point.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c perf.cpp -o perf.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -G -L/usr/local/lib -o FNN.so ANN.o KNN_ANN.o KNN_correlation_distance.o KNN_cover_test.o KNN_cover_tree.o KNN_mutual_information.o bd_fix_rad_search.o bd_pr_search.o bd_search.o bd_tree.o brute.o init_FNN.o kd_dump.o kd_fix_rad_search.o kd_pr_search.o kd_search.o kd_split.o kd_tree.o kd_util.o label_point.o perf.o
rm -f *.o core
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c ANN.cpp -o ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_ANN.cpp -o KNN_ANN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_correlation_distance.cpp -o KNN_correlation_distance.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_test.cpp -o KNN_cover_test.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_cover_tree.cpp -o KNN_cover_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c KNN_mutual_information.cpp -o KNN_mutual_information.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_fix_rad_search.cpp -o bd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_pr_search.cpp -o bd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_search.cpp -o bd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c bd_tree.cpp -o bd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c brute.cpp -o brute.o
/home/ripley/developerstudio12.6/bin/cc -xc99 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmieee -xlibmil -xtarget=native -xcache=generic -nofstore -c init_FNN.c -o init_FNN.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_dump.cpp -o kd_dump.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_fix_rad_search.cpp -o kd_fix_rad_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_pr_search.cpp -o kd_pr_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_search.cpp -o kd_search.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_split.cpp -o kd_split.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_tree.cpp -o kd_tree.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c kd_util.cpp -o kd_util.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c label_point.cpp -o label_point.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -Iinclude -DUSING_R -DUSING_RPRINT -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c perf.cpp -o perf.o
installing to /tmp/RtmpFbayjx/RLIBS_2e4b4da7816/00LOCK-FNN/00new/FNN/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FNN)
* installing *source* package ‘RcppAnnoy’ ...
** package ‘RcppAnnoy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c annoy.cpp -o annoy.o
"../inst/include/annoylib.h", line 114: Error: Formal argument 1 of type char* in call to munmap(char*, unsigned) is being passed void*.
"../inst/include/annoylib.h", line 118: Error: Formal argument 1 of type char* in call to mmap(char*, unsigned, int, int, int, long) is being passed void*.
2 Error(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `annoy.o'
Current working directory /tmp/RtmpFbayjx/working_dir/RtmpruayPM/R.INSTALL4d4b5c3b6815/RcppAnnoy/src
ERROR: compilation failed for package ‘RcppAnnoy’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/RcppAnnoy’
* installing *source* package ‘RcppProgress’ ...
** package ‘RcppProgress’ successfully unpacked and MD5 sums checked
** using staged installation
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppProgress)
* installing *source* package ‘dqrng’ ...
** package ‘dqrng’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/BH/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/sitmo/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c RcppExports.cpp -o RcppExports.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/BH/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/sitmo/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c dqrng.cpp -o dqrng.o
"dqrng.cpp", line 38: Error: Could not find a match for boost::random::uniform_real_distribution<double>::uniform_real_distribution({initializer list}) needed in .
"dqrng.cpp", line 40: Error: Could not find a match for boost::random::normal_distribution<double>::normal_distribution({initializer list}) needed in .
"dqrng.cpp", line 42: Error: Could not find a match for boost::random::exponential_distribution<double>::exponential_distribution({initializer list}) needed in .
"dqrng.cpp", line 220: Warning: "dqsample_num(double, double, bool, Rcpp::Nullable<Rcpp::Vector<14, PreserveStorage>>, int)" is expected to return a value.
3 Error(s) and 1 Warning(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `dqrng.o'
Current working directory /tmp/RtmpFbayjx/working_dir/Rtmpv3ay9T/R.INSTALL5beb641bfb0/dqrng/src
ERROR: compilation failed for package ‘dqrng’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/dqrng’
ERROR: dependencies ‘RcppAnnoy’, ‘dqrng’ are not available for package ‘uwot’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/uwot’
The downloaded source packages are in
'/tmp/RtmpFbayjx/working_dir/Rtmp0CaaD5/downloaded_packages'
Failed with error: 'there is no package called 'uwot''
── 1. Error: Perform dimred umap ──────────────────────────────────────────────
there is no package called 'uwot'
Backtrace:
1. dyndimred:::method_fun(expr)
2. uwot::umap
3. base::getExportedValue(pkg, name)
4. base::asNamespace(ns)
5. base::getNamespace(ns)
6. base::loadNamespace(name)
7. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. base:::withOneRestart(expr, restarts[[1L]])
9. base:::doWithOneRestart(return(expr), restart)
trying URL 'http://cran.rstudio.com/src/contrib/RcppAnnoy_0.0.14.tar.gz'
Content type 'application/x-gzip' length 439993 bytes (429 KB)
==================================================
downloaded 429 KB
trying URL 'http://cran.rstudio.com/src/contrib/dqrng_0.2.1.tar.gz'
Content type 'application/x-gzip' length 73541 bytes (71 KB)
==================================================
downloaded 71 KB
trying URL 'http://cran.rstudio.com/src/contrib/uwot_0.1.5.tar.gz'
Content type 'application/x-gzip' length 81034 bytes (79 KB)
==================================================
downloaded 79 KB
* installing *source* package ‘RcppAnnoy’ ...
** package ‘RcppAnnoy’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include/ -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c annoy.cpp -o annoy.o
"../inst/include/annoylib.h", line 114: Error: Formal argument 1 of type char* in call to munmap(char*, unsigned) is being passed void*.
"../inst/include/annoylib.h", line 118: Error: Formal argument 1 of type char* in call to mmap(char*, unsigned, int, int, int, long) is being passed void*.
2 Error(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `annoy.o'
Current working directory /tmp/RtmpFbayjx/working_dir/RtmpucaaJc/R.INSTALL51812ba13b5/RcppAnnoy/src
ERROR: compilation failed for package ‘RcppAnnoy’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/RcppAnnoy’
* installing *source* package ‘dqrng’ ...
** package ‘dqrng’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/BH/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/sitmo/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c RcppExports.cpp -o RcppExports.o
/home/ripley/developerstudio12.6/bin/CC -std=c++11 -library=stdcpp,CrunG3 -I"/home/ripley/R/cc/include" -DNDEBUG -I../inst/include -DSTRICT_R_HEADERS -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/Rcpp/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/BH/include" -I"/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/sitmo/include" -I/usr/local/include -KPIC -O -xlibmil -xtarget=native -xcache=generic -nofstore -c dqrng.cpp -o dqrng.o
"dqrng.cpp", line 38: Error: Could not find a match for boost::random::uniform_real_distribution<double>::uniform_real_distribution({initializer list}) needed in .
"dqrng.cpp", line 40: Error: Could not find a match for boost::random::normal_distribution<double>::normal_distribution({initializer list}) needed in .
"dqrng.cpp", line 42: Error: Could not find a match for boost::random::exponential_distribution<double>::exponential_distribution({initializer list}) needed in .
"dqrng.cpp", line 220: Warning: "dqsample_num(double, double, bool, Rcpp::Nullable<Rcpp::Vector<14, PreserveStorage>>, int)" is expected to return a value.
3 Error(s) and 1 Warning(s) detected.
*** Error code 2
make: Fatal error: Command failed for target `dqrng.o'
Current working directory /tmp/RtmpFbayjx/working_dir/Rtmp9Daiqp/R.INSTALL1e81539c3d18/dqrng/src
ERROR: compilation failed for package ‘dqrng’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/dqrng’
ERROR: dependencies ‘RcppAnnoy’, ‘dqrng’ are not available for package ‘uwot’
* removing ‘/tmp/RtmpFbayjx/RLIBS_2e4b4da7816/uwot’
The downloaded source packages are in
'/tmp/RtmpFbayjx/working_dir/Rtmp0CaaD5/downloaded_packages'
Failed with error: 'there is no package called 'uwot''
── 2. Error: Perform dimred umap ──────────────────────────────────────────────
there is no package called 'uwot'
Backtrace:
1. dyndimred:::method_fun(small_expr)
2. uwot::umap
3. base::getExportedValue(pkg, name)
4. base::asNamespace(ns)
5. base::getNamespace(ns)
6. base::loadNamespace(name)
7. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
8. base:::withOneRestart(expr, restarts[[1L]])
9. base:::doWithOneRestart(return(expr), restart)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 191 | SKIPPED: 0 | WARNINGS: 6 | FAILED: 2 ]
1. Error: Perform dimred umap
2. Error: Perform dimred umap
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.0.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [51s/51s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
6. base::loadNamespace(name)
9. base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
11. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
13. base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
14. base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
15. base:::withOneRestart(expr, restarts[[1L]])
16. base:::doWithOneRestart(return(expr), restart)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 191 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
1. Error: Perform dimred dm_destiny
2. Error: Perform dimred dm_destiny
Error: testthat unit tests failed
Execution halted
Flavor: r-release-osx-x86_64