CRAN Package Check Results for Package gsg

Last updated on 2020-03-07 09:48:37 CET.

Check Details

Version: 2.0
Check: R code for possible problems
Result: NOTE
    fitness.landscape : case.boot.fit.land: no visible global function
     definition for 'as.formula'
    fitness.landscape : para.boot.fit.land : simulate.gam.gsg: no visible
     global function definition for 'predict'
    fitness.landscape : para.boot.fit.land : simulate.gam.gsg: no visible
     global function definition for 'rpois'
    fitness.landscape : para.boot.fit.land : simulate.gam.gsg: no visible
     global function definition for 'rbinom'
    fitness.landscape : para.boot.fit.land: no visible global function
     definition for 'as.formula'
    fitness.landscape: no visible global function definition for 'terms'
    fitness.landscape : pts: no visible global function definition for 'sd'
    fitness.landscape: no visible global function definition for
     'flush.console'
    fitness.landscape: no visible binding for global variable 'quantile'
    gam.gradients : gradients: no visible binding for global variable 'sd'
    gam.gradients : boot.gradients: no visible global function definition
     for 'as.formula'
    gam.gradients : simulate.gam.gsg: no visible global function definition
     for 'predict'
    gam.gradients : simulate.gam.gsg: no visible global function definition
     for 'rpois'
    gam.gradients : simulate.gam.gsg: no visible global function definition
     for 'rbinom'
    gam.gradients : simulate.gam.gsg: no visible global function definition
     for 'rnbinom'
    gam.gradients : simulate.gam.gsg: no visible global function definition
     for 'rnorm'
    gam.gradients : boot.gradients.para: no visible global function
     definition for 'as.formula'
    gam.gradients : permute.W.refit: no visible global function definition
     for 'as.formula'
    gam.gradients : permute.W.refit: no visible global function definition
     for 'predict'
    gam.gradients : permute.W.refit: no visible global function definition
     for 'var'
    gam.gradients: no visible global function definition for 'terms'
    gam.gradients: no visible global function definition for
     'flush.console'
    gam.gradients: no visible binding for global variable 'sd'
    gppr: no visible global function definition for 'ppr'
    gppr: no visible global function definition for 'as.formula'
    gppr: no visible global function definition for 'predict'
    gppr.gradients : Wbar: no visible global function definition for
     'predict'
    gppr.gradients : gradients: no visible binding for global variable 'sd'
    gppr.gradients : simulate.gppr.gsg: no visible global function
     definition for 'predict'
    gppr.gradients : simulate.gppr.gsg: no visible global function
     definition for 'rpois'
    gppr.gradients : simulate.gppr.gsg: no visible global function
     definition for 'rbinom'
    gppr.gradients : boot.gradients.para: no visible global function
     definition for 'plot'
    gppr.gradients : permute.W.refit: no visible global function definition
     for 'predict'
    gppr.gradients : permute.W.refit: no visible global function definition
     for 'var'
    gppr.gradients: no visible global function definition for 'terms'
    gppr.gradients: no visible global function definition for
     'flush.console'
    gppr.gradients: no visible binding for global variable 'sd'
    moments.differentials : Pmatrix: no visible global function definition
     for 'var'
    moments.differentials : Pmatrix: no visible global function definition
     for 'cov'
    moments.differentials : weighted.covar: no visible global function
     definition for 'weighted.mean'
    moments.differentials : coef.moments : <anonymous>: no visible global
     function definition for 'sd'
    moments.differentials : coef.moments: no visible global function
     definition for 'weighted.mean'
    moments.differentials : coef.moments: no visible global function
     definition for 'var'
    moments.differentials : coef.moments: no visible global function
     definition for 'cov'
    moments.differentials : <anonymous>: no visible global function
     definition for 'sd'
    predict.gppr: no visible global function definition for 'predict'
    Undefined global functions or variables:
     as.formula cov flush.console plot ppr predict quantile rbinom rnbinom
     rnorm rpois sd terms var weighted.mean
    Consider adding
     importFrom("graphics", "plot")
     importFrom("stats", "as.formula", "cov", "ppr", "predict", "quantile",
     "rbinom", "rnbinom", "rnorm", "rpois", "sd", "terms", "var",
     "weighted.mean")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.0
Check: Rd \usage sections
Result: WARN
    Documented arguments not in \usage in documentation object 'gppr':
     '...'
    
    Functions with \usage entries need to have the appropriate \alias
    entries, and all their arguments documented.
    The \usage entries must correspond to syntactically valid R code.
    See chapter 'Writing R documentation files' in the 'Writing R
    Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64