Last updated on 2020-03-07 11:48:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2-1 | 37.06 | 192.45 | 229.51 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2-1 | 25.77 | 150.15 | 175.92 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2-1 | 277.95 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2-1 | 268.74 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.2-1 | 95.00 | 281.00 | 376.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.2-1 | 74.00 | 305.00 | 379.00 | OK | |
| r-patched-linux-x86_64 | 1.2-1 | 27.88 | 166.63 | 194.51 | OK | |
| r-patched-solaris-x86 | 1.2-1 | 328.20 | OK | |||
| r-release-linux-x86_64 | 1.2-1 | 28.37 | 168.28 | 196.65 | OK | |
| r-release-windows-ix86+x86_64 | 1.2-1 | 70.00 | 249.00 | 319.00 | OK | |
| r-release-osx-x86_64 | 1.2-1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2-1 | 57.00 | 246.00 | 303.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2-1 | OK |
Version: 1.2-1
Check: tests
Result: ERROR
Running 'test-all.R' [13s/14s]
Running 'testthat.R' [15s/16s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> library(quantspec)
Loading required package: stats4
>
> #' @importFrom testthat test_package
> test_check("quantspec")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0x819fd90>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
-- 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
== testthat results ===========================================================
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> #library(quantspec)
>
> # importFrom testthat test_package
> # test_package("quantspec")
> test_check("quantspec")
Loading required package: quantspec
Loading required package: stats4
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0x832e1d8>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
-- 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
== testthat results ===========================================================
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2-1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'QAR1.pdf' 'QAR1.rdata'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2-1
Check: tests
Result: ERROR
Running ‘test-all.R’ [11s/17s]
Running ‘testthat.R’ [11s/17s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> library(quantspec)
Loading required package: stats4
>
> #' @importFrom testthat test_package
> test_check("quantspec")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0x55e29ef2cd78>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> #library(quantspec)
>
> # importFrom testthat test_package
> # test_package("quantspec")
> test_check("quantspec")
Loading required package: quantspec
Loading required package: stats4
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0x5570320d67a0>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2-1
Check: compiled code
Result: NOTE
File ‘quantspec/libs/quantspec.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2-1
Check: tests
Result: ERROR
Running ‘test-all.R’ [15s/16s]
Running ‘testthat.R’ [15s/18s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> library(quantspec)
Loading required package: stats4
>
> #' @importFrom testthat test_package
> test_check("quantspec")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0x97d59c0>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> #library(quantspec)
>
> # importFrom testthat test_package
> # test_package("quantspec")
> test_check("quantspec")
Loading required package: quantspec
Loading required package: stats4
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0x8485688>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2-1
Check: tests
Result: ERROR
Running ‘test-all.R’ [15s/17s]
Running ‘testthat.R’ [15s/18s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> library(quantspec)
Loading required package: stats4
>
> #' @importFrom testthat test_package
> test_check("quantspec")
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0xa164668>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> #library(quantspec)
>
> # importFrom testthat test_package
> # test_package("quantspec")
> test_check("quantspec")
Loading required package: quantspec
Loading required package: stats4
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
quantspec
--- call from context ---
smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
--- call from argument ---
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
} else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
} else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
} else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
} else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
--- R stacktrace ---
where 1 at testthat/test-multivariate.R#132: smoothedPG(Y, levels.1 = lev.ok.all, weight = weight, type = "clipped")
where 2: eval(code, test_env)
where 3: eval(code, test_env)
where 4: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 5: doTryCatch(return(expr), name, parentenv, handler)
where 6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 7: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 8: doTryCatch(return(expr), name, parentenv, handler)
where 9: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 10: tryCatchList(expr, classes, parentenv, handlers)
where 11: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 12: test_code(desc, code, env = parent.frame())
where 13 at testthat/test-multivariate.R#119: test_that("multivariate functions work as expected (check against ref-results.rdata",
{
source("load-ref.R")
set.seed(2581)
Y1 <- ts1(16)
Y2 <- ts1(16)
Y <- matrix(c(Y1, Y2), ncol = 2)
lev.ok.all <- c(0.25, 0.5, 0.75)
weight = kernelWeight(W = W0, N = 64, bw = 0.2)
sPG.fft <- smoothedPG(Y, levels.1 = lev.ok.all, weight = weight,
type = "clipped")
W.fft.ci.mult <- getPointwiseCIs(sPG.fft)
W.fft.coh.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherency")
W.fft.cohsq.ci.mult <- getPointwiseCIs(sPG.fft, quantity = "coherence")
W.fft.sd.mult <- getSdNaive(sPG.fft)
W.fft.coh.sd.1.mult <- getCoherencySdNaive(sPG.fft, type = "1")
W.fft.coh.sd.2.mult <- getCoherencySdNaive(sPG.fft, type = "2")
expect_equal(W.fft.ci.mult, W.fft.ci.mult.ref)
expect_equal(W.fft.coh.ci.mult.ref, W.fft.coh.ci.mult)
expect_equal(W.fft.cohsq.ci.mult.ref, W.fft.cohsq.ci.mult)
expect_equal(W.fft.sd.mult.ref, W.fft.sd.mult.ref)
expect_equal(W.fft.coh.sd.1.mult.ref, W.fft.coh.sd.1.mult.ref)
expect_equal(W.fft.coh.sd.2.mult.ref, W.fft.coh.sd.2.mult.ref)
})
where 14: eval(code, test_env)
where 15: eval(code, test_env)
where 16: withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error)
where 17: doTryCatch(return(expr), name, parentenv, handler)
where 18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
where 20: doTryCatch(return(expr), name, parentenv, handler)
where 21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
where 22: tryCatchList(expr, classes, parentenv, handlers)
where 23: tryCatch(withCallingHandlers({
eval(code, test_env)
if (!handled && !is.null(test)) {
skip_empty()
}
}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning,
message = handle_message, error = handle_error), error = handle_fatal,
skip = function(e) {
})
where 24: test_code(NULL, exprs, env)
where 25: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
where 26: force(code)
where 27: doWithOneRestart(return(expr), restart)
where 28: withOneRestart(expr, restarts[[1L]])
where 29: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 30: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter,
{
reporter$start_file(basename(path))
lister$start_file(basename(path))
source_file(path, new.env(parent = env), chdir = TRUE,
wrap = wrap)
reporter$.end_context()
reporter$end_file()
})
where 31: FUN(X[[i]], ...)
where 32: lapply(paths, test_file, env = env, reporter = current_reporter,
start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
where 33: force(code)
where 34: doWithOneRestart(return(expr), restart)
where 35: withOneRestart(expr, restarts[[1L]])
where 36: withRestarts(testthat_abort_reporter = function() NULL, force(code))
where 37: with_reporter(reporter = current_reporter, results <- lapply(paths,
test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE,
load_helpers = FALSE, wrap = wrap))
where 38: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 39: test_dir(path = test_path, reporter = reporter, env = env, filter = filter,
..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning,
wrap = wrap)
where 40: test_package_dir(package = package, test_path = test_path, filter = filter,
reporter = reporter, ..., stop_on_failure = stop_on_failure,
stop_on_warning = stop_on_warning, wrap = wrap)
where 41: test_check("quantspec")
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (object, frequencies = 2 * pi/lenTS(object) * 0:(lenTS(object) -
1), levels.1 = 0.5, levels.2 = levels.1, isRankBased = TRUE,
type = c("clipped", "qr"), type.boot = c("none", "mbb"),
method = c("br", "fn", "pfn", "fnc", "lasso", "scad"), parallel = FALSE,
B = 0, l = 1, weight = kernelWeight())
{
if (class(object) == "numeric" | class(object) == "matrix") {
versConstr <- 1
Y <- object
}
else if (class(object) == "ts") {
versConstr <- 1
Y <- object[1:length(object)]
}
else if (class(object) == "zoo") {
versConstr <- 1
Y <- coredata(object)
}
else if (class(object) == "QuantilePG") {
versConstr <- 2
if (!hasArg(frequencies)) {
Y <- object@freqRep@Y
frequencies <- 2 * pi/lenTS(Y) * 0:(lenTS(Y) - 1)
}
if (!hasArg(levels.1)) {
levels.1 <- getLevels(object, 1)
}
if (!hasArg(levels.2)) {
levels.2 <- getLevels(object, 2)
}
}
else {
stop("object is neither 'numeric', 'matrix', 'ts', 'zoo', nor 'QuantilePG'.")
}
if (versConstr == 1) {
levels.all <- union(levels.1, levels.2)
K1 <- length(levels.1)
K2 <- length(levels.2)
J <- length(frequencies)
qPG <- quantilePG(Y, frequencies = 2 * pi/lenTS(Y) *
0:(lenTS(Y) - 1), levels.1 = levels.1, levels.2 = levels.2,
isRankBased = isRankBased, type = type, type.boot = type.boot,
B = B, l = l)
}
else if (versConstr == 2) {
qPG <- object
}
obj <- new(Class = "SmoothedPG", qPG = qPG, weight = weight,
frequencies = frequencies, levels = list(levels.1, levels.2))
return(obj)
}
<bytecode: 0x91db6e8>
<environment: namespace:quantspec>
--- function search by body ---
Function smoothedPG in namespace quantspec has this body.
----------- END OF FAILURE REPORT --------------
── 1. Error: multivariate functions work as expected (check against ref-results.
the condition has length > 1
Backtrace:
1. quantspec::smoothedPG(...)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 83 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Error: multivariate functions work as expected (check against ref-results.rdata (@test-multivariate.R#132)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc