Last updated on 2020-03-13 16:46:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.6 | 13.88 | 155.05 | 168.93 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3.6 | 11.05 | 118.77 | 129.82 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.6 | 198.34 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.6 | 190.26 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.3.6 | 39.00 | 164.00 | 203.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.3.6 | 27.00 | 193.00 | 220.00 | OK | |
| r-patched-linux-x86_64 | 1.3.6 | 14.16 | 145.69 | 159.85 | OK | |
| r-patched-solaris-x86 | 1.3.6 | 259.20 | ERROR | |||
| r-release-linux-x86_64 | 1.3.6 | 11.99 | 150.16 | 162.15 | OK | |
| r-release-windows-ix86+x86_64 | 1.3.6 | 21.00 | 162.00 | 183.00 | OK | |
| r-release-osx-x86_64 | 1.3.6 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.6 | 16.00 | 147.00 | 163.00 | OK | |
| r-oldrel-osx-x86_64 | 1.3.6 | OK |
Version: 1.3.6
Check: examples
Result: ERROR
Running examples in 'metricTester-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: killSomeBig
> ### Title: Remove most closely related individuals for large arenas
> ### Aliases: killSomeBig
>
> ### ** Examples
>
> #simulate tree with birth-death process
> tree <- geiger::sim.bdtree(b=0.1, d=0, stop="taxa", n=50)
>
> #prep the data for the simulation
> prepped <- prepSimulations(tree, arena.length=300, mean.log.individuals=1,
+ length.parameter=5000, sd.parameter=50, max.distance=20, proportion.killed=0.2,
+ competition.iterations=5)
>
> #use the random simulation to generate a starting arena
> random <- randomArena(prepped)
>
> #in normal use, these parameters will be carried down from the simulations.input object
> new.arena <- killSomeBig(tree, arena.output=random, max.distance=50,
+ proportion.killed=0.2)
Error in dis[sppInSample, sppInSample] : subscript out of bounds
Calls: killSomeBig -> modifiedMPD
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.3.6
Check: examples
Result: ERROR
Running examples in ‘metricTester-Ex.R’ failed
The error most likely occurred in:
> ### Name: killSomeBig
> ### Title: Remove most closely related individuals for large arenas
> ### Aliases: killSomeBig
>
> ### ** Examples
>
> #simulate tree with birth-death process
> tree <- geiger::sim.bdtree(b=0.1, d=0, stop="taxa", n=50)
>
> #prep the data for the simulation
> prepped <- prepSimulations(tree, arena.length=300, mean.log.individuals=1,
+ length.parameter=5000, sd.parameter=50, max.distance=20, proportion.killed=0.2,
+ competition.iterations=5)
>
> #use the random simulation to generate a starting arena
> random <- randomArena(prepped)
>
> #in normal use, these parameters will be carried down from the simulations.input object
> new.arena <- killSomeBig(tree, arena.output=random, max.distance=50,
+ proportion.killed=0.2)
Error in dis[sppInSample, sppInSample] : subscript out of bounds
Calls: killSomeBig -> modifiedMPD
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86