Last updated on 2020-03-15 08:47:51 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 14.68 | 140.53 | 155.21 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 11.18 | 113.74 | 124.92 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 242.91 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 192.56 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.0.0 | 24.00 | 351.00 | 375.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.0.0 | 22.00 | 206.00 | 228.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 12.36 | 100.78 | 113.14 | WARN | |
| r-patched-solaris-x86 | 1.0.0 | 303.80 | OK | |||
| r-release-linux-x86_64 | 1.0.0 | 12.64 | 101.80 | 114.44 | WARN | |
| r-release-windows-ix86+x86_64 | 1.0.0 | 38.00 | 255.00 | 293.00 | OK | |
| r-release-osx-x86_64 | 1.0.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.0 | 15.00 | 189.00 | 204.00 | OK | |
| r-oldrel-osx-x86_64 | 1.0.0 | OK |
Version: 1.0.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'qqtest'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'intro.Rmd' using rmarkdown
Loading required package: TSP
Loading required package: gtools
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: grid
Quitting from lines 676-697 (intro.Rmd)
Error: processing vignette 'intro.Rmd' failed with diagnostics:
there is no package called 'qqtest'
--- failed re-building 'intro.Rmd'
--- re-building 'selected_features.Rmd' using rmarkdown
Loading required package: TSP
Loading required package: gtools
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: rJava
--- finished re-building 'selected_features.Rmd'
SUMMARY: processing the following file failed:
'intro.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘intro.Rmd’ using rmarkdown
Loading required package: TSP
Loading required package: gtools
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: grid
Quitting from lines 676-697 (intro.Rmd)
Error: processing vignette 'intro.Rmd' failed with diagnostics:
there is no package called 'qqtest'
--- failed re-building ‘intro.Rmd’
--- re-building ‘selected_features.Rmd’ using rmarkdown
Loading required package: TSP
Loading required package: gtools
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: rJava
--- finished re-building ‘selected_features.Rmd’
SUMMARY: processing the following file failed:
‘intro.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: running examples for arch ‘i386’
Result: ERROR
Running examples in 'zenplots-Ex.R' failed
The error most likely occurred in:
> ### Name: graph_pairs
> ### Title: Turn pairs or paths into a graph
> ### Aliases: graph_pairs
>
> ### ** Examples
>
> ## Get some pairs
> pairs <- matrix(c(1,2, 5,1, 3,4, 2,3, 4,2), ncol = 2, byrow = TRUE)
> g <- graph_pairs(pairs)
> ## which can be displayed using plot(g)
> ## if the graph package is installed.
> library(graph)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
> plot(g)
Error in as.double(y) :
cannot coerce type 'S4' to vector of type 'double'
Calls: plot -> plot -> plot.default -> xy.coords
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.0.0
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'zenplots-Ex.R' failed
The error most likely occurred in:
> ### Name: graph_pairs
> ### Title: Turn pairs or paths into a graph
> ### Aliases: graph_pairs
>
> ### ** Examples
>
> ## Get some pairs
> pairs <- matrix(c(1,2, 5,1, 3,4, 2,3, 4,2), ncol = 2, byrow = TRUE)
> g <- graph_pairs(pairs)
> ## which can be displayed using plot(g)
> ## if the graph package is installed.
> library(graph)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
> plot(g)
Error in as.double(y) :
cannot coerce type 'S4' to vector of type 'double'
Calls: plot -> plot -> plot.default -> xy.coords
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'intro.Rmd' using rmarkdown
Loading required package: TSP
Loading required package: gtools
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: grid
Warning: multiple methods tables found for 'plot'
Quitting from lines 98-102 (intro.Rmd)
Error: processing vignette 'intro.Rmd' failed with diagnostics:
cannot coerce type 'S4' to vector of type 'double'
--- failed re-building 'intro.Rmd'
--- re-building 'selected_features.Rmd' using rmarkdown
Loading required package: TSP
Loading required package: gtools
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: rJava
Quitting from lines 249-251 (selected_features.Rmd)
Error: processing vignette 'selected_features.Rmd' failed with diagnostics:
cannot coerce type 'S4' to vector of type 'double'
--- failed re-building 'selected_features.Rmd'
SUMMARY: processing the following files failed:
'intro.Rmd' 'selected_features.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.0.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-release-osx-x86_64