Last updated on 2020-03-19 07:47:27 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.0 | 22.19 | 174.54 | 196.73 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.5.0 | 15.96 | 137.76 | 153.72 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.0 | 223.96 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.0 | 224.57 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.5.0 | 63.00 | 271.00 | 334.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.5.0 | 29.00 | 6.00 | 35.00 | ERROR | |
| r-patched-linux-x86_64 | 0.5.0 | 16.12 | 239.24 | 255.36 | OK | |
| r-patched-solaris-x86 | 0.5.0 | 361.50 | ERROR | |||
| r-release-linux-x86_64 | 0.5.0 | 17.27 | 238.67 | 255.94 | OK | |
| r-release-windows-ix86+x86_64 | 0.5.0 | 41.00 | 276.00 | 317.00 | NOTE | |
| r-release-osx-x86_64 | 0.5.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.5.0 | 21.00 | 301.00 | 322.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.5.0 | NOTE |
Version: 0.5.0
Check: examples
Result: ERROR
Running examples in 'bioRad-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: beam_profile_overlap
> ### Title: Calculate overlap between a vertical profile ('vp') of
> ### biological scatterers and the vertical radiation profile emitted by
> ### the radar
> ### Aliases: beam_profile_overlap
>
> ### ** Examples
>
> # locate example volume file:
> pvolfile <- system.file("extdata", "volume.h5", package = "bioRad")
>
> # load the example polar volume file:
> pvol <- read_pvolfile(pvolfile)
Error in x[list] <- values :
incompatible types (from logical to raw) in subassignment type fix
Calls: read_pvolfile ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.5.0
Check: tests
Result: ERROR
Running 'testthat.R' [15s/16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(bioRad)
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
>
> test_check("bioRad")
-- 1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
-- 2. Error: integrate to ppi produces simular output when limits are set (@test
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
-- 3. Error: integrate to ppi produces same values on cropped raster (@test-rast
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
-- 4. Error: check if other projection gives same result (@test-raster_input.R#4
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
== testthat results ===========================================================
[ OK: 49 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
2. Error: integrate to ppi produces simular output when limits are set (@test-raster_input.R#20)
3. Error: integrate to ppi produces same values on cropped raster (@test-raster_input.R#33)
4. Error: check if other projection gives same result (@test-raster_input.R#48)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'bioRad.Rmd' using rmarkdown
--- finished re-building 'bioRad.Rmd'
--- re-building 'rad_aero_19.Rmd' using rmarkdown
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
--- finished re-building 'rad_aero_19.Rmd'
--- re-building 'range_correction.Rmd' using rmarkdown
Quitting from lines 63-70 (range_correction.Rmd)
Error: processing vignette 'range_correction.Rmd' failed with diagnostics:
incompatible types (from logical to raw) in subassignment type fix
--- failed re-building 'range_correction.Rmd'
SUMMARY: processing the following file failed:
'range_correction.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bioRad)
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
>
> test_check("bioRad")
── 1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 2. Error: integrate to ppi produces simular output when limits are set (@test
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 3. Error: integrate to ppi produces same values on cropped raster (@test-rast
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 4. Error: check if other projection gives same result (@test-raster_input.R#4
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 49 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
2. Error: integrate to ppi produces simular output when limits are set (@test-raster_input.R#20)
3. Error: integrate to ppi produces same values on cropped raster (@test-raster_input.R#33)
4. Error: check if other projection gives same result (@test-raster_input.R#48)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.0
Check: installed package size
Result: NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
data 1.6Mb
doc 1.3Mb
extdata 1.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.5.0
Check: examples
Result: ERROR
Running examples in ‘bioRad-Ex.R’ failed
The error most likely occurred in:
> ### Name: beam_profile_overlap
> ### Title: Calculate overlap between a vertical profile ('vp') of
> ### biological scatterers and the vertical radiation profile emitted by
> ### the radar
> ### Aliases: beam_profile_overlap
>
> ### ** Examples
>
> # locate example volume file:
> pvolfile <- system.file("extdata", "volume.h5", package = "bioRad")
>
> # load the example polar volume file:
> pvol <- read_pvolfile(pvolfile)
Error in x[list] <- values :
incompatible types (from logical to raw) in subassignment type fix
Calls: read_pvolfile ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64
Version: 0.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bioRad)
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
>
> test_check("bioRad")
── 1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 2. Error: integrate to ppi produces simular output when limits are set (@test
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 3. Error: integrate to ppi produces same values on cropped raster (@test-rast
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 4. Error: check if other projection gives same result (@test-raster_input.R#4
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 49 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
2. Error: integrate to ppi produces simular output when limits are set (@test-raster_input.R#20)
3. Error: integrate to ppi produces same values on cropped raster (@test-raster_input.R#33)
4. Error: check if other projection gives same result (@test-raster_input.R#48)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘bioRad.Rmd’ using rmarkdown
--- finished re-building ‘bioRad.Rmd’
--- re-building ‘rad_aero_19.Rmd’ using rmarkdown
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
--- finished re-building ‘rad_aero_19.Rmd’
--- re-building ‘range_correction.Rmd’ using rmarkdown
Quitting from lines 63-70 (range_correction.Rmd)
Error: processing vignette 'range_correction.Rmd' failed with diagnostics:
incompatible types (from logical to raw) in subassignment type fix
--- failed re-building ‘range_correction.Rmd’
SUMMARY: processing the following file failed:
‘range_correction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bioRad)
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
>
> test_check("bioRad")
── 1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 2. Error: integrate to ppi produces simular output when limits are set (@test
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 3. Error: integrate to ppi produces same values on cropped raster (@test-rast
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 4. Error: check if other projection gives same result (@test-raster_input.R#4
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 49 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
2. Error: integrate to ppi produces simular output when limits are set (@test-raster_input.R#20)
3. Error: integrate to ppi produces same values on cropped raster (@test-raster_input.R#33)
4. Error: check if other projection gives same result (@test-raster_input.R#48)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.5.0
Check: tests
Result: ERROR
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(bioRad)
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
>
> test_check("bioRad")
-- 1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
-- 2. Error: integrate to ppi produces simular output when limits are set (@test
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
-- 3. Error: integrate to ppi produces same values on cropped raster (@test-rast
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
-- 4. Error: check if other projection gives same result (@test-raster_input.R#4
incompatible types (from logical to raw) in subassignment type fix
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
== testthat results ===========================================================
[ OK: 49 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 4 ]
1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
2. Error: integrate to ppi produces simular output when limits are set (@test-raster_input.R#20)
3. Error: integrate to ppi produces same values on cropped raster (@test-raster_input.R#33)
4. Error: check if other projection gives same result (@test-raster_input.R#48)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.5.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'bioRad.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
--- finished re-building 'bioRad.Rmd'
--- re-building 'rad_aero_19.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
--- finished re-building 'rad_aero_19.Rmd'
--- re-building 'range_correction.Rmd' using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Quitting from lines 63-70 (range_correction.Rmd)
Error: processing vignette 'range_correction.Rmd' failed with diagnostics:
incompatible types (from logical to raw) in subassignment type fix
--- failed re-building 'range_correction.Rmd'
SUMMARY: processing the following file failed:
'range_correction.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.5.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-ix86+x86_64-gcc8
Version: 0.5.0
Check: examples
Result: ERROR
Running examples in ‘bioRad-Ex.R’ failed
The error most likely occurred in:
> ### Name: beam_profile_overlap
> ### Title: Calculate overlap between a vertical profile ('vp') of
> ### biological scatterers and the vertical radiation profile emitted by
> ### the radar
> ### Aliases: beam_profile_overlap
>
> ### ** Examples
>
> # locate example volume file:
> pvolfile <- system.file("extdata", "volume.h5", package = "bioRad")
>
> # load the example polar volume file:
> pvol <- read_pvolfile(pvolfile)
Error in H5Fopen(file, "H5F_ACC_RDONLY", native = native) :
HDF5. File accessibilty. Unable to open file.
Calls: read_pvolfile ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.5.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [20s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bioRad)
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
>
> test_check("bioRad")
── 1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
HDF5. File accessibilty. Unable to open file.
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 2. Error: integrate to ppi produces simular output when limits are set (@test
HDF5. File accessibilty. Unable to open file.
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 3. Error: integrate to ppi produces same values on cropped raster (@test-rast
HDF5. File accessibilty. Unable to open file.
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 4. Error: check if other projection gives same result (@test-raster_input.R#4
HDF5. File accessibilty. Unable to open file.
Backtrace:
1. testthat::expect_s3_class(...)
4. bioRad::read_pvolfile(pvolfile)
5. base::tryCatch(...)
6. base:::tryCatchList(expr, classes, parentenv, handlers)
7. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. value[[3L]](cond)
── 5. Error: Read a vertical profile (@test-read_vpfiles.R#5) ─────────────────
HDF5. File accessibilty. Unable to open file.
Backtrace:
1. testthat::expect_s3_class(read_vpfiles(vpfile), "vp")
4. bioRad::read_vpfiles(vpfile)
5. bioRad:::read_vp(files)
6. bioRad::is.vpfile(file)
7. bioRad::get_odim_object_type(file)
8. bioRad:::is.odimfile(file)
9. rhdf5::h5ls(file, recursive = FALSE)
10. rhdf5:::h5checktypeOrOpenLoc(file, readonly = TRUE, native = native)
11. rhdf5::H5Fopen(file, "H5F_ACC_RDONLY", native = native)
── 6. Error: Read multiple vertical profiles (@test-read_vpfiles.R#13) ────────
HDF5. File accessibilty. Unable to open file.
Backtrace:
1. testthat::expect_is(read_vpfiles(c(vpfile, vpfile)), "list")
4. bioRad::read_vpfiles(c(vpfile, vpfile))
5. base::lapply(files, read_vp)
6. bioRad:::FUN(X[[i]], ...)
7. bioRad::is.vpfile(file)
8. bioRad::get_odim_object_type(file)
9. bioRad:::is.odimfile(file)
10. rhdf5::h5ls(file, recursive = FALSE)
11. rhdf5:::h5checktypeOrOpenLoc(file, readonly = TRUE, native = native)
12. rhdf5::H5Fopen(file, "H5F_ACC_RDONLY", native = native)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 43 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 6 ]
1. Error: integrate to ppi produces simular output (@test-raster_input.R#10)
2. Error: integrate to ppi produces simular output when limits are set (@test-raster_input.R#20)
3. Error: integrate to ppi produces same values on cropped raster (@test-raster_input.R#33)
4. Error: check if other projection gives same result (@test-raster_input.R#48)
5. Error: Read a vertical profile (@test-read_vpfiles.R#5)
6. Error: Read multiple vertical profiles (@test-read_vpfiles.R#13)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.5.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘bioRad.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
--- finished re-building ‘bioRad.Rmd’
--- re-building ‘rad_aero_19.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Welcome to bioRad version 0.5.0
Warning: Docker daemon not found
Warning: bioRad functionality requiring Docker has been disabled
To enable Docker functionality, first install Docker
--- finished re-building ‘rad_aero_19.Rmd’
--- re-building ‘range_correction.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Quitting from lines 63-70 (range_correction.Rmd)
Error: processing vignette 'range_correction.Rmd' failed with diagnostics:
HDF5. File accessibilty. Unable to open file.
--- failed re-building ‘range_correction.Rmd’
SUMMARY: processing the following file failed:
‘range_correction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86