Last updated on 2020-03-19 07:47:34 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.15 | 148.29 | 556.16 | 704.45 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.15 | 88.28 | 387.25 | 475.53 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.15 | 671.02 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.15 | 508.62 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.1.15 | 233.00 | 626.00 | 859.00 | NOTE | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.1.15 | 260.00 | 520.00 | 780.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.15 | 95.80 | 352.44 | 448.24 | OK | |
| r-patched-solaris-x86 | 0.1.15 | 326.40 | ERROR | |||
| r-release-linux-x86_64 | 0.1.15 | 97.13 | 401.08 | 498.21 | OK | |
| r-release-windows-ix86+x86_64 | 0.1.15 | 227.00 | 477.00 | 704.00 | NOTE | |
| r-release-osx-x86_64 | 0.1.15 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.15 | 226.00 | 482.00 | 708.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.1.15 | NOTE |
Version: 0.1.15
Check: installed package size
Result: NOTE
installed size is 14.0Mb
sub-directories of 1Mb or more:
libs 12.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.1.15
Check: tests
Result: ERROR
Running ‘testthat.R’ [24s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gwsem)
Loading required package: OpenMx
To take full advantage of multiple cores, use:
mxOption(key='Number of Threads', value=parallel::detectCores()) #now
Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
>
> test_check("gwsem")
Error: C stack usage 273781876 is too close to the limit
── 1. Error: (unknown) (@test-covariate.R#36) ─────────────────────────────────
This model has 5 matrices, but the backend has returned 0 values
Backtrace:
1. gwsem::GWAS(...)
2. OpenMx::mxRun(model)
3. OpenMx:::runHelper(...)
4. OpenMx:::updateModelMatrices(model, flatModel, output$matrices)
── 2. Error: (unknown) (@test-model.R#75) ─────────────────────────────────────
incompatible dimensions
Backtrace:
1. testthat::expect_equal(cor(ml$P, pgen$P), 1, tolerance = 0.001)
4. stats::cor(ml$P, pgen$P)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 47 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 2 ]
1. Error: (unknown) (@test-covariate.R#36)
2. Error: (unknown) (@test-model.R#75)
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.15
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘growth.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: OpenMx
To take full advantage of multiple cores, use:
mxOption(key='Number of Threads', value=parallel::detectCores()) #now
Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
Error: C stack usage 316970100 is too close to the limit
Quitting from lines 173-175 (growth.Rmd)
Error: processing vignette 'growth.Rmd' failed with diagnostics:
This model has 4 matrices, but the backend has returned 0 values
--- failed re-building ‘growth.Rmd’
SUMMARY: processing the following file failed:
‘growth.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86