Last updated on 2020-03-23 06:48:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6 | 15.21 | 141.36 | 156.57 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.6 | 14.41 | 108.36 | 122.77 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6 | 205.56 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6 | 182.26 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.6 | 32.00 | 155.00 | 187.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.6 | 34.00 | 168.00 | 202.00 | NOTE | |
| r-patched-linux-x86_64 | 0.6 | 12.24 | 127.17 | 139.41 | NOTE | |
| r-patched-solaris-x86 | 0.6 | 303.50 | ERROR | |||
| r-release-linux-x86_64 | 0.6 | 12.86 | 124.61 | 137.47 | NOTE | |
| r-release-windows-ix86+x86_64 | 0.6 | 29.00 | 148.00 | 177.00 | NOTE | |
| r-release-osx-x86_64 | 0.6 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.6 | 19.00 | 152.00 | 171.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.6 | NOTE |
Version: 0.6
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
'maptools' 'spatstat' 'spdep'
Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.6
Check: R code for possible problems
Result: NOTE
fAssocmatrix : fAssocmatrix1: no visible global function definition for
'coordinates<-'
fAssocplot: no visible global function definition for 'coordinates'
fAssocplot: no visible global function definition for 'text'
fAssocplot: no visible global function definition for 'box'
fDrawfigure: no visible global function definition for 'slot'
fDrawfigure : <anonymous>: no visible global function definition for
'slot'
fDrawfigure: no visible global function definition for
'SpatialPolygons'
fDrawfigure: no visible global function definition for 'spsample'
fDrawfigure: no visible global function definition for 'image'
fDrawfigure: no visible global function definition for
'colorRampPalette'
fDrawfigure: no visible global function definition for 'points'
fRanXY : <anonymous>: no visible global function definition for 'slot'
fRanXY : <anonymous>: no visible global function definition for
'spsample'
Undefined global functions or variables:
SpatialPolygons box colorRampPalette coordinates coordinates<- image
points slot spsample text
Consider adding
importFrom("grDevices", "colorRampPalette")
importFrom("graphics", "box", "image", "points", "text")
importFrom("methods", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86
Version: 0.6
Check: Rd line widths
Result: NOTE
Rd file 'fAssocmatrix.Rd':
\examples lines wider than 100 characters:
## Run 20 permutations using individuals accoring to sighting probability (ave no. roos seen on survey = 6)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.6
Check: examples
Result: ERROR
Running examples in 'Digiroo2-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fDrawfigure
> ### Title: Plot the location of the random point falling within an
> ### individual's home range
> ### Aliases: fDrawfigure
>
> ### ** Examples
>
>
> ## Load required packages
> library(adehabitatHR)
Loading required package: deldir
deldir 0.1-25
Loading required package: ade4
Attaching package: 'ade4'
The following object is masked from 'package:spdep':
mstree
The following object is masked from 'package:spatstat':
disc
Loading required package: adehabitatMA
Loading required package: adehabitatLT
Loading required package: CircStats
Loading required package: MASS
Attaching package: 'MASS'
The following object is masked from 'package:spatstat':
area
Loading required package: boot
Attaching package: 'boot'
The following object is masked from 'package:spatstat':
envelope
>
> ## Load study data
> data(StudyArea)
> data(Roos)
>
> # Subset the data for only 1 individual
> RooSubid <- 'Stripes'
> RooSub <- subset(Roos,Roos$ID==RooSubid)
> RooSub$ID <- as.character(RooSub$ID)
>
> coordinates(RooSub) <- ~x+y
>
> ## Estimation of UD and KUD 95% for 1 animal
> ud <- kernelUD(RooSub,h="href",same4all=TRUE)
> ver95 <- getverticeshr(ud,95,unin = c("m"),unout=c("ha"))
> udsgdf <- as(estUDm2spixdf(ud),"SpatialGridDataFrame")
>
> ## Extract random points falling within animal #1's KUD 95%
> fDrawfigure(1,ver95,RooSub,StudyArea)
Error in as.double(y) :
cannot coerce type 'S4' to vector of type 'double'
Calls: fDrawfigure -> plot -> plot.default -> xy.coords
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.6
Check: examples
Result: ERROR
Running examples in ‘Digiroo2-Ex.R’ failed
The error most likely occurred in:
> ### Name: fDrawfigure
> ### Title: Plot the location of the random point falling within an
> ### individual's home range
> ### Aliases: fDrawfigure
>
> ### ** Examples
>
>
> ## Load required packages
> library(adehabitatHR)
Loading required package: deldir
deldir 0.1-25
Loading required package: ade4
Attaching package: ‘ade4’
The following object is masked from ‘package:spdep’:
mstree
The following object is masked from ‘package:spatstat’:
disc
Loading required package: adehabitatMA
Loading required package: adehabitatLT
Loading required package: CircStats
Loading required package: MASS
Attaching package: ‘MASS’
The following object is masked from ‘package:spatstat’:
area
Loading required package: boot
Attaching package: ‘boot’
The following object is masked from ‘package:spatstat’:
envelope
>
> ## Load study data
> data(StudyArea)
> data(Roos)
>
> # Subset the data for only 1 individual
> RooSubid <- 'Stripes'
> RooSub <- subset(Roos,Roos$ID==RooSubid)
> RooSub$ID <- as.character(RooSub$ID)
>
> coordinates(RooSub) <- ~x+y
>
> ## Estimation of UD and KUD 95% for 1 animal
> ud <- kernelUD(RooSub,h="href",same4all=TRUE)
> ver95 <- getverticeshr(ud,95,unin = c("m"),unout=c("ha"))
> udsgdf <- as(estUDm2spixdf(ud),"SpatialGridDataFrame")
>
> ## Extract random points falling within animal #1's KUD 95%
> fDrawfigure(1,ver95,RooSub,StudyArea)
Error in as.double(y) :
cannot coerce type 'S4' to vector of type 'double'
Calls: fDrawfigure -> plot -> plot.default -> xy.coords
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86
Version: 0.6
Check: R code for possible problems
Result: NOTE
fAssocmatrix : fAssocmatrix1: no visible global function definition for
'coordinates<-'
fAssocplot: no visible global function definition for 'plot'
fAssocplot: no visible global function definition for 'coordinates'
fAssocplot: no visible global function definition for 'text'
fAssocplot: no visible global function definition for 'box'
fDrawfigure: no visible global function definition for 'slot'
fDrawfigure : <anonymous>: no visible global function definition for
'slot'
fDrawfigure: no visible global function definition for
'SpatialPolygons'
fDrawfigure: no visible global function definition for 'spsample'
fDrawfigure: no visible global function definition for 'plot'
fDrawfigure: no visible global function definition for 'image'
fDrawfigure: no visible global function definition for
'colorRampPalette'
fDrawfigure: no visible global function definition for 'points'
fRanXY : <anonymous>: no visible global function definition for 'slot'
fRanXY : <anonymous>: no visible global function definition for
'spsample'
Undefined global functions or variables:
SpatialPolygons box colorRampPalette coordinates coordinates<- image
plot points slot spsample text
Consider adding
importFrom("grDevices", "colorRampPalette")
importFrom("graphics", "box", "image", "plot", "points", "text")
importFrom("methods", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
Flavors: r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64