Last updated on 2020-03-28 06:48:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.1 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 0.3.1 | 5.83 | 190.85 | 196.68 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.1 | 319.72 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.1 | 317.50 | OK | |||
| r-devel-windows-ix86+x86_64 | 0.3.1 | 24.00 | 105.00 | 129.00 | WARN | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.3.1 | 16.00 | 292.00 | 308.00 | OK | |
| r-patched-linux-x86_64 | 0.3.1 | 7.04 | 267.34 | 274.38 | OK | |
| r-patched-solaris-x86 | 0.3.1 | 397.50 | OK | |||
| r-release-linux-x86_64 | 0.3.1 | 5.79 | 264.48 | 270.27 | OK | |
| r-release-windows-ix86+x86_64 | 0.3.1 | 26.00 | 418.00 | 444.00 | OK | |
| r-release-osx-x86_64 | 0.3.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.3.1 | 19.00 | 414.00 | 433.00 | OK | |
| r-oldrel-osx-x86_64 | 0.3.1 | WARN |
Version: 0.3.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'case_study.Rmd' using rmarkdown
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.8.0 (2020-02-14 07:10:20 UTC) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.23.0 successfully loaded. See ?R.oo for help.
Attaching package: 'R.oo'
The following object is masked from 'package:R.methodsS3':
throw
The following objects are masked from 'package:methods':
getClasses, getMethods
The following objects are masked from 'package:base':
attach, detach, load, save
R.utils v2.9.2 successfully loaded. See ?R.utils for help.
Attaching package: 'R.utils'
The following object is masked from 'package:utils':
timestamp
The following objects are masked from 'package:base':
cat, commandArgs, getOption, inherits, isOpen, nullfile, parse,
warnings
Attaching package: 'igraph'
The following object is masked from 'package:R.oo':
hierarchy
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:igraph':
normalize, path, union
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Error: package or namespace load failed for 'S4Vectors':
.onLoad failed in loadNamespace() for 'S4Vectors', details:
call: validObject(.Object)
error: invalid class "LLint" object: superclass "integer_OR_LLint" not defined in the environment of the object's class
Quitting from lines 32-41 (case_study.Rmd)
Error: processing vignette 'case_study.Rmd' failed with diagnostics:
package 'S4Vectors' could not be loaded
--- failed re-building 'case_study.Rmd'
--- re-building 'using_cRegulome.Rmd' using rmarkdown
Picking joint bandwidth of 0.0445
--- finished re-building 'using_cRegulome.Rmd'
SUMMARY: processing the following file failed:
'case_study.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 0.3.1
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'AnnotationDbi', 'org.Hs.eg.db', 'clusterProfiler'
Flavor: r-release-osx-x86_64
Version: 0.3.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘case_study.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.1 (2016-02-15) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.22.0 (2018-04-21) successfully loaded. See ?R.oo for help.
Attaching package: 'R.oo'
The following objects are masked from 'package:methods':
getClasses, getMethods
The following objects are masked from 'package:base':
attach, detach, gc, load, save
R.utils v2.8.0 successfully loaded. See ?R.utils for help.
Attaching package: 'R.utils'
The following object is masked from 'package:utils':
timestamp
The following objects are masked from 'package:base':
cat, commandArgs, getOption, inherits, isOpen, nullfile,
parse, warnings
Attaching package: 'igraph'
The following object is masked from 'package:R.oo':
hierarchy
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Quitting from lines 32-41 (case_study.Rmd)
Error: processing vignette 'case_study.Rmd' failed with diagnostics:
there is no package called 'AnnotationDbi'
--- failed re-building ‘case_study.Rmd’
--- re-building ‘using_cRegulome.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Picking joint bandwidth of 0.0445
--- finished re-building ‘using_cRegulome.Rmd’
SUMMARY: processing the following file failed:
‘case_study.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.3.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘clusterProfiler’
Flavor: r-oldrel-osx-x86_64
Version: 0.3.1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Attaching package: 'IRanges'
The following object is masked from 'package:R.oo':
trim
Quitting from lines 32-41 (case_study.Rmd)
Error: processing vignette 'case_study.Rmd' failed with diagnostics:
there is no package called 'clusterProfiler'
Execution halted
Flavor: r-oldrel-osx-x86_64