CRAN Package Check Results for Package mpMap2

Last updated on 2020-03-31 04:48:55 CEST.

Additional issues

noOMP

Check Details

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     arsa.cpp:52:13: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
     arsa.cpp:52:30: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
     arsa.cpp:321:22: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.1
Check: installed package size
Result: NOTE
     installed size is 82.6Mb
     sub-directories of 1Mb or more:
     R 1.1Mb
     libs 78.8Mb
     mathematica 1.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘mpMap2.Rnw’ using Sweave
    Warning in mpcross(founders = founders, finals = finals, pedigree = pedigreeSF, :
     Removing data for 1 markers, because these markers have NA founder alleles
    Error in validObject(.Object) :
     invalid class “geneticData” object: 1: Coding error for marker D1M3: Founder allele 10 was not present in @hetData[[3]]
    invalid class “geneticData” object: 2: Coding error for marker D1M4: Founder allele 2 was not present in @hetData[[4]]
    invalid class “geneticData” object: 3: Coding error for marker D1M4: Founder allele 3 was not present in @hetData[[4]]
    invalid class “geneticData” object: 4: Coding error for marker D1M4: Founder allele 4 was not present in @hetData[[4]]
    invalid class “geneticData” object: 5: Coding error for marker D1M5: Founder allele 1 was not present in @hetData[[5]]
    invalid class “geneticData” object: 6: Omitting details of further coding errors
    
    Warning: stack imbalance in 'lazyLoadDBfetch', 33 then 39
    
     *** caught segfault ***
    address 4, cause 'memory not mapped'
    
    Traceback:
     1: close(object$output)
     2: driver$finish(drobj, error = TRUE)
     3: utils::Sweave(...)
     4: engine$weave(file, quiet = quiet, encoding = enc)
     5: doTryCatch(return(expr), name, parentenv, handler)
     6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     7: tryCatchList(expr, classes, parentenv, handlers)
     8: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
     9: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests-devel/mpMap2.Rcheck/vign_test/mpMap2", ser_elibs = "/tmp/RtmpLzaGEP/file52f47f46d88.rds")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 1.0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘Heatplus’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64