Last updated on 2020-04-03 08:51:21 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.1.14 | 14.02 | 170.50 | 184.52 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.9.1.14 | 11.51 | 149.73 | 161.24 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9.1.14 | 198.76 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.1.14 | 198.11 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.9.1.14 | 28.00 | 156.00 | 184.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.9.1.14 | 32.00 | 158.00 | 190.00 | ERROR | |
| r-patched-linux-x86_64 | 0.9.1.14 | 13.01 | 165.46 | 178.47 | ERROR | |
| r-patched-solaris-x86 | 0.9.1.14 | 287.90 | ERROR | |||
| r-release-linux-x86_64 | 0.9.1.14 | 12.15 | 166.08 | 178.23 | OK | |
| r-release-windows-ix86+x86_64 | 0.9.1.14 | 27.00 | 174.00 | 201.00 | OK | |
| r-release-osx-x86_64 | 0.9.1.14 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.9.1.14 | 19.00 | 151.00 | 170.00 | OK | |
| r-oldrel-osx-x86_64 | 0.9.1.14 | NOTE |
Version: 0.9.1.14
Check: examples
Result: ERROR
Running examples in 'ClinReport-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: report.quali.hlev
> ### Title: 'Hierarchical Qualitative' statistics reporting (experimental)
> ### Aliases: report.quali.hlev
>
> ### ** Examples
>
>
> data(adverse_event)
>
> test=report.quali.hlev(data=adverse_event,subjid="SUBJID",var_upper="PTNAME",
+ var_lower="SOCNAME",lower.levels="System Organ Class",upper.levels="Prefered Terms",x1="randtrt")
Error in match.names(clabs, names(xi)) :
names do not match previous names
Calls: report.quali.hlev -> report.quali.hlev -> rbind -> rbind -> match.names
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 0.9.1.14
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'clinreport_graphics.Rmd' using knitr
Attaching package: 'dplyr'
The following object is masked from 'package:ClinReport':
desc
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: carData
Attaching package: 'car'
The following object is masked from 'package:dplyr':
recode
--- finished re-building 'clinreport_graphics.Rmd'
--- re-building 'clinreport_modify_outputs.Rmd' using knitr
--- finished re-building 'clinreport_modify_outputs.Rmd'
--- re-building 'clinreport_vignette_get_started.Rmd' using knitr
Attaching package: 'dplyr'
The following object is masked from 'package:ClinReport':
desc
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: carData
Attaching package: 'car'
The following object is masked from 'package:dplyr':
recode
Quitting from lines 202-220 (clinreport_vignette_get_started.Rmd)
Error: processing vignette 'clinreport_vignette_get_started.Rmd' failed with diagnostics:
names do not match previous names
--- failed re-building 'clinreport_vignette_get_started.Rmd'
--- re-building 'clinreport_vignette_standard.Rmd' using knitr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: carData
Attaching package: 'car'
The following object is masked from 'package:dplyr':
recode
--- finished re-building 'clinreport_vignette_standard.Rmd'
SUMMARY: processing the following file failed:
'clinreport_vignette_get_started.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86
Version: 0.9.1.14
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘car’ ‘emmeans’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.9.1.14
Check: examples
Result: ERROR
Running examples in ‘ClinReport-Ex.R’ failed
The error most likely occurred in:
> ### Name: report.quali.hlev
> ### Title: 'Hierarchical Qualitative' statistics reporting (experimental)
> ### Aliases: report.quali.hlev
>
> ### ** Examples
>
>
> data(adverse_event)
>
> test=report.quali.hlev(data=adverse_event,subjid="SUBJID",var_upper="PTNAME",
+ var_lower="SOCNAME",lower.levels="System Organ Class",upper.levels="Prefered Terms",x1="randtrt")
Error in match.names(clabs, names(xi)) :
names do not match previous names
Calls: report.quali.hlev -> report.quali.hlev -> rbind -> rbind -> match.names
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-solaris-x86
Version: 0.9.1.14
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘clinreport_graphics.Rmd’ using knitr
Attaching package: 'dplyr'
The following object is masked from 'package:ClinReport':
desc
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: carData
Attaching package: 'car'
The following object is masked from 'package:dplyr':
recode
--- finished re-building ‘clinreport_graphics.Rmd’
--- re-building ‘clinreport_modify_outputs.Rmd’ using knitr
--- finished re-building ‘clinreport_modify_outputs.Rmd’
--- re-building ‘clinreport_vignette_get_started.Rmd’ using knitr
Attaching package: 'dplyr'
The following object is masked from 'package:ClinReport':
desc
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: carData
Attaching package: 'car'
The following object is masked from 'package:dplyr':
recode
Quitting from lines 202-220 (clinreport_vignette_get_started.Rmd)
Error: processing vignette 'clinreport_vignette_get_started.Rmd' failed with diagnostics:
names do not match previous names
--- failed re-building ‘clinreport_vignette_get_started.Rmd’
--- re-building ‘clinreport_vignette_standard.Rmd’ using knitr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: carData
Attaching package: 'car'
The following object is masked from 'package:dplyr':
recode
--- finished re-building ‘clinreport_vignette_standard.Rmd’
SUMMARY: processing the following file failed:
‘clinreport_vignette_get_started.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8