CRAN Package Check Results for Package MonoPhy

Last updated on 2020-04-09 09:48:17 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 10.93 103.41 114.34 ERROR
r-devel-linux-x86_64-debian-gcc 1.2 9.86 78.11 87.97 ERROR
r-devel-linux-x86_64-fedora-clang 1.2 136.84 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2 142.12 ERROR
r-devel-windows-ix86+x86_64 1.2 29.00 137.00 166.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 1.2 23.00 111.00 134.00 ERROR
r-patched-linux-x86_64 1.2 12.24 98.70 110.94 ERROR
r-patched-osx-x86_64 1.2 ERROR
r-patched-solaris-x86 1.2 232.50 ERROR
r-release-linux-x86_64 1.2 9.83 90.56 100.39 ERROR
r-release-windows-ix86+x86_64 1.2 21.00 152.00 173.00 OK
r-release-osx-x86_64 1.2 OK
r-oldrel-windows-ix86+x86_64 1.2 19.00 169.00 188.00 OK
r-oldrel-osx-x86_64 1.2 OK

Check Details

Version: 1.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'spacodiR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.2
Check: tests
Result: ERROR
     Running 'testthat.R' [5s/6s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     -- 1. Failure: Regular solution is accurate (@test_solutions.R#11) ------------
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 2. Failure: Regular solution is accurate (@test_solutions.R#12) ------------
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     -- 3. Failure: Regular solution is accurate (@test_solutions.R#13) ------------
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     -- 4. Failure: Regular solution is accurate (@test_solutions.R#14) ------------
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 5. Failure: Regular solution is accurate (@test_solutions.R#15) ------------
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 6. Failure: Regular solution is accurate (@test_solutions.R#16) ------------
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     -- 7. Failure: Regular solution is accurate (@test_solutions.R#17) ------------
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 8. Failure: Regular solution is accurate (@test_solutions.R#18) ------------
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     -- 9. Failure: Regular solution is accurate (@test_solutions.R#19) ------------
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     -- 10. Failure: Regular solution is accurate (@test_solutions.R#20) -----------
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 11. Failure: Regular solution is accurate (@test_solutions.R#21) -----------
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     -- 12. Failure: Regular solution is accurate (@test_solutions.R#22) -----------
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     -- 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) -----
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     -- 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) -----
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     -- 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ----
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     == testthat results ===========================================================
     [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'MonoTaxplot.pdf' 'Taxplot.pdf'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [4s/5s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     ── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     ── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     ── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     ── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     ── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     ── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     ── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     ── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     ── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     ── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     ── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     ── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     ── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     ── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     ── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     ── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     ── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     ── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     ── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     ── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     ── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     ── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2
Check: tests
Result: ERROR
     Running 'testthat.R' [7s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     -- 1. Failure: Regular solution is accurate (@test_solutions.R#11) ------------
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 2. Failure: Regular solution is accurate (@test_solutions.R#12) ------------
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     -- 3. Failure: Regular solution is accurate (@test_solutions.R#13) ------------
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     -- 4. Failure: Regular solution is accurate (@test_solutions.R#14) ------------
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 5. Failure: Regular solution is accurate (@test_solutions.R#15) ------------
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 6. Failure: Regular solution is accurate (@test_solutions.R#16) ------------
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     -- 7. Failure: Regular solution is accurate (@test_solutions.R#17) ------------
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 8. Failure: Regular solution is accurate (@test_solutions.R#18) ------------
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     -- 9. Failure: Regular solution is accurate (@test_solutions.R#19) ------------
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     -- 10. Failure: Regular solution is accurate (@test_solutions.R#20) -----------
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 11. Failure: Regular solution is accurate (@test_solutions.R#21) -----------
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     -- 12. Failure: Regular solution is accurate (@test_solutions.R#22) -----------
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     -- 13. Failure: Multifurcating solution1 is accurate (@test_solutions.R#48) ---
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 14. Failure: Multifurcating solution1 is accurate (@test_solutions.R#49) ---
     ...[] not equal to 8.
     1/1 mismatches
     [1] NA - 8 == NA
    
     -- 15. Failure: Multifurcating solution1 is accurate (@test_solutions.R#50) ---
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 16. Failure: Multifurcating solution1 is accurate (@test_solutions.R#51) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 17. Failure: Multifurcating solution1 is accurate (@test_solutions.R#52) ---
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     -- 18. Failure: Multifurcating solution1 is accurate (@test_solutions.R#53) ---
     ...[] not equal to 0.
     1/1 mismatches
     [1] NA - 0 == NA
    
     -- 19. Failure: Multifurcating solution1 is accurate (@test_solutions.R#54) ---
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 20. Failure: Multifurcating solution1 is accurate (@test_solutions.R#55) ---
     ...[] not equal to 23.
     1/1 mismatches
     [1] NA - 23 == NA
    
     -- 21. Failure: Multifurcating solution1 is accurate (@test_solutions.R#56) ---
     ...[] not equal to 37.
     1/1 mismatches
     [1] NA - 37 == NA
    
     -- 22. Failure: Multifurcating solution1 is accurate (@test_solutions.R#57) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 23. Failure: Multifurcating solution1 is accurate (@test_solutions.R#58) ---
     ...[] not equal to 47.
     1/1 mismatches
     [1] NA - 47 == NA
    
     -- 24. Failure: Multifurcating solution1 is accurate (@test_solutions.R#59) ---
     ...[] not equal to 0.
     1/1 mismatches
     [1] NA - 0 == NA
    
     -- 25. Failure: Multifurcating solution2 is accurate (@test_solutions.R#85) ---
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 26. Failure: Multifurcating solution2 is accurate (@test_solutions.R#86) ---
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     -- 27. Failure: Multifurcating solution2 is accurate (@test_solutions.R#87) ---
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     -- 28. Failure: Multifurcating solution2 is accurate (@test_solutions.R#88) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 29. Failure: Multifurcating solution2 is accurate (@test_solutions.R#89) ---
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 30. Failure: Multifurcating solution2 is accurate (@test_solutions.R#90) ---
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     -- 31. Failure: Multifurcating solution2 is accurate (@test_solutions.R#91) ---
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 32. Failure: Multifurcating solution2 is accurate (@test_solutions.R#92) ---
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     -- 33. Failure: Multifurcating solution2 is accurate (@test_solutions.R#93) ---
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     -- 34. Failure: Multifurcating solution2 is accurate (@test_solutions.R#94) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 35. Failure: Multifurcating solution2 is accurate (@test_solutions.R#95) ---
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     -- 36. Failure: Multifurcating solution2 is accurate (@test_solutions.R#96) ---
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     -- 37. Failure: Multifurcating solution3 is accurate (@test_solutions.R#122) --
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 38. Failure: Multifurcating solution3 is accurate (@test_solutions.R#123) --
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 39. Failure: Multifurcating solution3 is accurate (@test_solutions.R#124) --
     ...[] not equal to 8.
     1/1 mismatches
     [1] NA - 8 == NA
    
     -- 40. Failure: Multifurcating solution3 is accurate (@test_solutions.R#125) --
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 41. Failure: Multifurcating solution3 is accurate (@test_solutions.R#126) --
     ...[] not equal to 15.
     1/1 mismatches
     [1] NA - 15 == NA
    
     -- 42. Failure: Multifurcating solution3 is accurate (@test_solutions.R#127) --
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     -- 43. Failure: Multifurcating solution3 is accurate (@test_solutions.R#128) --
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 44. Failure: Multifurcating solution3 is accurate (@test_solutions.R#129) --
     ...[] not equal to 20.
     1/1 mismatches
     [1] NA - 20 == NA
    
     -- 45. Failure: Multifurcating solution3 is accurate (@test_solutions.R#130) --
     ...[] not equal to 40.
     1/1 mismatches
     [1] NA - 40 == NA
    
     -- 46. Failure: Multifurcating solution3 is accurate (@test_solutions.R#131) --
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 47. Failure: Multifurcating solution3 is accurate (@test_solutions.R#132) --
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     -- 48. Failure: Multifurcating solution3 is accurate (@test_solutions.R#133) --
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     == testthat results ===========================================================
     [ OK: 48 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 48 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.2
Check: tests
Result: ERROR
     Running 'testthat.R' [5s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     -- 1. Failure: Regular solution is accurate (@test_solutions.R#11) ------------
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 2. Failure: Regular solution is accurate (@test_solutions.R#12) ------------
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     -- 3. Failure: Regular solution is accurate (@test_solutions.R#13) ------------
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     -- 4. Failure: Regular solution is accurate (@test_solutions.R#14) ------------
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 5. Failure: Regular solution is accurate (@test_solutions.R#15) ------------
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 6. Failure: Regular solution is accurate (@test_solutions.R#16) ------------
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     -- 7. Failure: Regular solution is accurate (@test_solutions.R#17) ------------
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 8. Failure: Regular solution is accurate (@test_solutions.R#18) ------------
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     -- 9. Failure: Regular solution is accurate (@test_solutions.R#19) ------------
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     -- 10. Failure: Regular solution is accurate (@test_solutions.R#20) -----------
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 11. Failure: Regular solution is accurate (@test_solutions.R#21) -----------
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     -- 12. Failure: Regular solution is accurate (@test_solutions.R#22) -----------
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     -- 13. Failure: Multifurcating solution1 is accurate (@test_solutions.R#48) ---
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 14. Failure: Multifurcating solution1 is accurate (@test_solutions.R#49) ---
     ...[] not equal to 8.
     1/1 mismatches
     [1] NA - 8 == NA
    
     -- 15. Failure: Multifurcating solution1 is accurate (@test_solutions.R#50) ---
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 16. Failure: Multifurcating solution1 is accurate (@test_solutions.R#51) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 17. Failure: Multifurcating solution1 is accurate (@test_solutions.R#52) ---
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     -- 18. Failure: Multifurcating solution1 is accurate (@test_solutions.R#53) ---
     ...[] not equal to 0.
     1/1 mismatches
     [1] NA - 0 == NA
    
     -- 19. Failure: Multifurcating solution1 is accurate (@test_solutions.R#54) ---
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 20. Failure: Multifurcating solution1 is accurate (@test_solutions.R#55) ---
     ...[] not equal to 23.
     1/1 mismatches
     [1] NA - 23 == NA
    
     -- 21. Failure: Multifurcating solution1 is accurate (@test_solutions.R#56) ---
     ...[] not equal to 37.
     1/1 mismatches
     [1] NA - 37 == NA
    
     -- 22. Failure: Multifurcating solution1 is accurate (@test_solutions.R#57) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 23. Failure: Multifurcating solution1 is accurate (@test_solutions.R#58) ---
     ...[] not equal to 47.
     1/1 mismatches
     [1] NA - 47 == NA
    
     -- 24. Failure: Multifurcating solution1 is accurate (@test_solutions.R#59) ---
     ...[] not equal to 0.
     1/1 mismatches
     [1] NA - 0 == NA
    
     -- 25. Failure: Multifurcating solution2 is accurate (@test_solutions.R#85) ---
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 26. Failure: Multifurcating solution2 is accurate (@test_solutions.R#86) ---
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     -- 27. Failure: Multifurcating solution2 is accurate (@test_solutions.R#87) ---
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     -- 28. Failure: Multifurcating solution2 is accurate (@test_solutions.R#88) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 29. Failure: Multifurcating solution2 is accurate (@test_solutions.R#89) ---
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 30. Failure: Multifurcating solution2 is accurate (@test_solutions.R#90) ---
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     -- 31. Failure: Multifurcating solution2 is accurate (@test_solutions.R#91) ---
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 32. Failure: Multifurcating solution2 is accurate (@test_solutions.R#92) ---
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     -- 33. Failure: Multifurcating solution2 is accurate (@test_solutions.R#93) ---
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     -- 34. Failure: Multifurcating solution2 is accurate (@test_solutions.R#94) ---
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 35. Failure: Multifurcating solution2 is accurate (@test_solutions.R#95) ---
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     -- 36. Failure: Multifurcating solution2 is accurate (@test_solutions.R#96) ---
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     -- 37. Failure: Multifurcating solution3 is accurate (@test_solutions.R#122) --
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     -- 38. Failure: Multifurcating solution3 is accurate (@test_solutions.R#123) --
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     -- 39. Failure: Multifurcating solution3 is accurate (@test_solutions.R#124) --
     ...[] not equal to 8.
     1/1 mismatches
     [1] NA - 8 == NA
    
     -- 40. Failure: Multifurcating solution3 is accurate (@test_solutions.R#125) --
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 41. Failure: Multifurcating solution3 is accurate (@test_solutions.R#126) --
     ...[] not equal to 15.
     1/1 mismatches
     [1] NA - 15 == NA
    
     -- 42. Failure: Multifurcating solution3 is accurate (@test_solutions.R#127) --
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     -- 43. Failure: Multifurcating solution3 is accurate (@test_solutions.R#128) --
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     -- 44. Failure: Multifurcating solution3 is accurate (@test_solutions.R#129) --
     ...[] not equal to 20.
     1/1 mismatches
     [1] NA - 20 == NA
    
     -- 45. Failure: Multifurcating solution3 is accurate (@test_solutions.R#130) --
     ...[] not equal to 40.
     1/1 mismatches
     [1] NA - 40 == NA
    
     -- 46. Failure: Multifurcating solution3 is accurate (@test_solutions.R#131) --
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     -- 47. Failure: Multifurcating solution3 is accurate (@test_solutions.R#132) --
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     -- 48. Failure: Multifurcating solution3 is accurate (@test_solutions.R#133) --
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     == testthat results ===========================================================
     [ OK: 48 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 48 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/6s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     ── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     ── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     ── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     ── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     ── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     ── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     ── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     ── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     ── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     ── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     ── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [3s/4s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘MonoPhyVignette.Rmd’ using rmarkdown
    Loading required package: ape
    Loading required package: phytools
    Loading required package: maps
    Loading required package: phangorn
    Loading required package: RColorBrewer
    Loading required package: taxize
    dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    dyld: Symbol not found: ____chkstk_darwin
     Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
     Expected in: /usr/lib/libSystem.B.dylib
    
    Error: processing vignette 'MonoPhyVignette.Rmd' failed with diagnostics:
    pandoc document conversion failed with error 6
    --- failed re-building ‘MonoPhyVignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘MonoPhyVignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-osx-x86_64

Version: 1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [9s/11s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     ── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
     ...[] not equal to 32.
     1/1 mismatches
     [1] NA - 32 == NA
    
     ── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
     ...[] not equal to 9.
     1/1 mismatches
     [1] NA - 9 == NA
    
     ── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
     ...[] not equal to 6.
     1/1 mismatches
     [1] NA - 6 == NA
    
     ── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
     ...[] not equal to 7.
     1/1 mismatches
     [1] NA - 7 == NA
    
     ── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
     ...[] not equal to 1.
     1/1 mismatches
     [1] NA - 1 == NA
    
     ── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
     ...[] not equal to 77.
     1/1 mismatches
     [1] NA - 77 == NA
    
     ── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
     ...[] not equal to 25.
     1/1 mismatches
     [1] NA - 25 == NA
    
     ── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
     ...[] not equal to 35.
     1/1 mismatches
     [1] NA - 35 == NA
    
     ── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
     ...[] not equal to 17.
     1/1 mismatches
     [1] NA - 17 == NA
    
     ── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
     ...[] not equal to 11.
     1/1 mismatches
     [1] NA - 11 == NA
    
     ── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
     ...[] not equal to 2.
     1/1 mismatches
     [1] NA - 2 == NA
    
     ── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
     1. Failure: Regular solution is accurate (@test_solutions.R#11)
     2. Failure: Regular solution is accurate (@test_solutions.R#12)
     3. Failure: Regular solution is accurate (@test_solutions.R#13)
     4. Failure: Regular solution is accurate (@test_solutions.R#14)
     5. Failure: Regular solution is accurate (@test_solutions.R#15)
     6. Failure: Regular solution is accurate (@test_solutions.R#16)
     7. Failure: Regular solution is accurate (@test_solutions.R#17)
     8. Failure: Regular solution is accurate (@test_solutions.R#18)
     9. Failure: Regular solution is accurate (@test_solutions.R#19)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.2
Check: tests
Result: ERROR
     Running ‘testthat.R’ [4s/6s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > test_check("MonoPhy")
     Loading required package: MonoPhy
     Loading required package: ape
     Loading required package: phytools
     Loading required package: maps
     Loading required package: phangorn
     Loading required package: RColorBrewer
     Loading required package: taxize
     ── 1. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ──────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 2. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ──────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ── 3. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ─────
     there is no package called 'spacodiR'
     Backtrace:
     1. base::library(spacodiR)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 24 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
     1. Error: Multifurcating solution1 is accurate (@test_solutions.R#38)
     2. Error: Multifurcating solution2 is accurate (@test_solutions.R#75)
     3. Error: Multifurcating solution3 is accurate (@test_solutions.R#112)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64