Last updated on 2020-04-09 09:48:17 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2 | 10.93 | 103.41 | 114.34 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 9.86 | 78.11 | 87.97 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 136.84 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 142.12 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.2 | 29.00 | 137.00 | 166.00 | ERROR | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.2 | 23.00 | 111.00 | 134.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2 | 12.24 | 98.70 | 110.94 | ERROR | |
| r-patched-osx-x86_64 | 1.2 | ERROR | ||||
| r-patched-solaris-x86 | 1.2 | 232.50 | ERROR | |||
| r-release-linux-x86_64 | 1.2 | 9.83 | 90.56 | 100.39 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.2 | 21.00 | 152.00 | 173.00 | OK | |
| r-release-osx-x86_64 | 1.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2 | 19.00 | 169.00 | 188.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2 | OK |
Version: 1.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'spacodiR'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-osx-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running 'testthat.R' [5s/6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
-- 1. Failure: Regular solution is accurate (@test_solutions.R#11) ------------
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 2. Failure: Regular solution is accurate (@test_solutions.R#12) ------------
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
-- 3. Failure: Regular solution is accurate (@test_solutions.R#13) ------------
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
-- 4. Failure: Regular solution is accurate (@test_solutions.R#14) ------------
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 5. Failure: Regular solution is accurate (@test_solutions.R#15) ------------
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 6. Failure: Regular solution is accurate (@test_solutions.R#16) ------------
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
-- 7. Failure: Regular solution is accurate (@test_solutions.R#17) ------------
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 8. Failure: Regular solution is accurate (@test_solutions.R#18) ------------
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
-- 9. Failure: Regular solution is accurate (@test_solutions.R#19) ------------
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
-- 10. Failure: Regular solution is accurate (@test_solutions.R#20) -----------
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 11. Failure: Regular solution is accurate (@test_solutions.R#21) -----------
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
-- 12. Failure: Regular solution is accurate (@test_solutions.R#22) -----------
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
-- 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) -----
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
-- 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) -----
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
-- 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ----
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
== testthat results ===========================================================
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'MonoTaxplot.pdf' 'Taxplot.pdf'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2
Check: tests
Result: ERROR
Running 'testthat.R' [7s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
-- 1. Failure: Regular solution is accurate (@test_solutions.R#11) ------------
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 2. Failure: Regular solution is accurate (@test_solutions.R#12) ------------
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
-- 3. Failure: Regular solution is accurate (@test_solutions.R#13) ------------
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
-- 4. Failure: Regular solution is accurate (@test_solutions.R#14) ------------
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 5. Failure: Regular solution is accurate (@test_solutions.R#15) ------------
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 6. Failure: Regular solution is accurate (@test_solutions.R#16) ------------
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
-- 7. Failure: Regular solution is accurate (@test_solutions.R#17) ------------
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 8. Failure: Regular solution is accurate (@test_solutions.R#18) ------------
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
-- 9. Failure: Regular solution is accurate (@test_solutions.R#19) ------------
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
-- 10. Failure: Regular solution is accurate (@test_solutions.R#20) -----------
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 11. Failure: Regular solution is accurate (@test_solutions.R#21) -----------
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
-- 12. Failure: Regular solution is accurate (@test_solutions.R#22) -----------
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
-- 13. Failure: Multifurcating solution1 is accurate (@test_solutions.R#48) ---
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 14. Failure: Multifurcating solution1 is accurate (@test_solutions.R#49) ---
...[] not equal to 8.
1/1 mismatches
[1] NA - 8 == NA
-- 15. Failure: Multifurcating solution1 is accurate (@test_solutions.R#50) ---
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 16. Failure: Multifurcating solution1 is accurate (@test_solutions.R#51) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 17. Failure: Multifurcating solution1 is accurate (@test_solutions.R#52) ---
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
-- 18. Failure: Multifurcating solution1 is accurate (@test_solutions.R#53) ---
...[] not equal to 0.
1/1 mismatches
[1] NA - 0 == NA
-- 19. Failure: Multifurcating solution1 is accurate (@test_solutions.R#54) ---
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 20. Failure: Multifurcating solution1 is accurate (@test_solutions.R#55) ---
...[] not equal to 23.
1/1 mismatches
[1] NA - 23 == NA
-- 21. Failure: Multifurcating solution1 is accurate (@test_solutions.R#56) ---
...[] not equal to 37.
1/1 mismatches
[1] NA - 37 == NA
-- 22. Failure: Multifurcating solution1 is accurate (@test_solutions.R#57) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 23. Failure: Multifurcating solution1 is accurate (@test_solutions.R#58) ---
...[] not equal to 47.
1/1 mismatches
[1] NA - 47 == NA
-- 24. Failure: Multifurcating solution1 is accurate (@test_solutions.R#59) ---
...[] not equal to 0.
1/1 mismatches
[1] NA - 0 == NA
-- 25. Failure: Multifurcating solution2 is accurate (@test_solutions.R#85) ---
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 26. Failure: Multifurcating solution2 is accurate (@test_solutions.R#86) ---
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
-- 27. Failure: Multifurcating solution2 is accurate (@test_solutions.R#87) ---
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
-- 28. Failure: Multifurcating solution2 is accurate (@test_solutions.R#88) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 29. Failure: Multifurcating solution2 is accurate (@test_solutions.R#89) ---
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 30. Failure: Multifurcating solution2 is accurate (@test_solutions.R#90) ---
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
-- 31. Failure: Multifurcating solution2 is accurate (@test_solutions.R#91) ---
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 32. Failure: Multifurcating solution2 is accurate (@test_solutions.R#92) ---
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
-- 33. Failure: Multifurcating solution2 is accurate (@test_solutions.R#93) ---
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
-- 34. Failure: Multifurcating solution2 is accurate (@test_solutions.R#94) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 35. Failure: Multifurcating solution2 is accurate (@test_solutions.R#95) ---
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
-- 36. Failure: Multifurcating solution2 is accurate (@test_solutions.R#96) ---
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
-- 37. Failure: Multifurcating solution3 is accurate (@test_solutions.R#122) --
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 38. Failure: Multifurcating solution3 is accurate (@test_solutions.R#123) --
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 39. Failure: Multifurcating solution3 is accurate (@test_solutions.R#124) --
...[] not equal to 8.
1/1 mismatches
[1] NA - 8 == NA
-- 40. Failure: Multifurcating solution3 is accurate (@test_solutions.R#125) --
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 41. Failure: Multifurcating solution3 is accurate (@test_solutions.R#126) --
...[] not equal to 15.
1/1 mismatches
[1] NA - 15 == NA
-- 42. Failure: Multifurcating solution3 is accurate (@test_solutions.R#127) --
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
-- 43. Failure: Multifurcating solution3 is accurate (@test_solutions.R#128) --
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 44. Failure: Multifurcating solution3 is accurate (@test_solutions.R#129) --
...[] not equal to 20.
1/1 mismatches
[1] NA - 20 == NA
-- 45. Failure: Multifurcating solution3 is accurate (@test_solutions.R#130) --
...[] not equal to 40.
1/1 mismatches
[1] NA - 40 == NA
-- 46. Failure: Multifurcating solution3 is accurate (@test_solutions.R#131) --
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 47. Failure: Multifurcating solution3 is accurate (@test_solutions.R#132) --
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
-- 48. Failure: Multifurcating solution3 is accurate (@test_solutions.R#133) --
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
== testthat results ===========================================================
[ OK: 48 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 48 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.2
Check: tests
Result: ERROR
Running 'testthat.R' [5s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
-- 1. Failure: Regular solution is accurate (@test_solutions.R#11) ------------
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 2. Failure: Regular solution is accurate (@test_solutions.R#12) ------------
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
-- 3. Failure: Regular solution is accurate (@test_solutions.R#13) ------------
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
-- 4. Failure: Regular solution is accurate (@test_solutions.R#14) ------------
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 5. Failure: Regular solution is accurate (@test_solutions.R#15) ------------
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 6. Failure: Regular solution is accurate (@test_solutions.R#16) ------------
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
-- 7. Failure: Regular solution is accurate (@test_solutions.R#17) ------------
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 8. Failure: Regular solution is accurate (@test_solutions.R#18) ------------
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
-- 9. Failure: Regular solution is accurate (@test_solutions.R#19) ------------
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
-- 10. Failure: Regular solution is accurate (@test_solutions.R#20) -----------
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 11. Failure: Regular solution is accurate (@test_solutions.R#21) -----------
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
-- 12. Failure: Regular solution is accurate (@test_solutions.R#22) -----------
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
-- 13. Failure: Multifurcating solution1 is accurate (@test_solutions.R#48) ---
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 14. Failure: Multifurcating solution1 is accurate (@test_solutions.R#49) ---
...[] not equal to 8.
1/1 mismatches
[1] NA - 8 == NA
-- 15. Failure: Multifurcating solution1 is accurate (@test_solutions.R#50) ---
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 16. Failure: Multifurcating solution1 is accurate (@test_solutions.R#51) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 17. Failure: Multifurcating solution1 is accurate (@test_solutions.R#52) ---
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
-- 18. Failure: Multifurcating solution1 is accurate (@test_solutions.R#53) ---
...[] not equal to 0.
1/1 mismatches
[1] NA - 0 == NA
-- 19. Failure: Multifurcating solution1 is accurate (@test_solutions.R#54) ---
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 20. Failure: Multifurcating solution1 is accurate (@test_solutions.R#55) ---
...[] not equal to 23.
1/1 mismatches
[1] NA - 23 == NA
-- 21. Failure: Multifurcating solution1 is accurate (@test_solutions.R#56) ---
...[] not equal to 37.
1/1 mismatches
[1] NA - 37 == NA
-- 22. Failure: Multifurcating solution1 is accurate (@test_solutions.R#57) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 23. Failure: Multifurcating solution1 is accurate (@test_solutions.R#58) ---
...[] not equal to 47.
1/1 mismatches
[1] NA - 47 == NA
-- 24. Failure: Multifurcating solution1 is accurate (@test_solutions.R#59) ---
...[] not equal to 0.
1/1 mismatches
[1] NA - 0 == NA
-- 25. Failure: Multifurcating solution2 is accurate (@test_solutions.R#85) ---
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 26. Failure: Multifurcating solution2 is accurate (@test_solutions.R#86) ---
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
-- 27. Failure: Multifurcating solution2 is accurate (@test_solutions.R#87) ---
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
-- 28. Failure: Multifurcating solution2 is accurate (@test_solutions.R#88) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 29. Failure: Multifurcating solution2 is accurate (@test_solutions.R#89) ---
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 30. Failure: Multifurcating solution2 is accurate (@test_solutions.R#90) ---
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
-- 31. Failure: Multifurcating solution2 is accurate (@test_solutions.R#91) ---
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 32. Failure: Multifurcating solution2 is accurate (@test_solutions.R#92) ---
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
-- 33. Failure: Multifurcating solution2 is accurate (@test_solutions.R#93) ---
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
-- 34. Failure: Multifurcating solution2 is accurate (@test_solutions.R#94) ---
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 35. Failure: Multifurcating solution2 is accurate (@test_solutions.R#95) ---
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
-- 36. Failure: Multifurcating solution2 is accurate (@test_solutions.R#96) ---
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
-- 37. Failure: Multifurcating solution3 is accurate (@test_solutions.R#122) --
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
-- 38. Failure: Multifurcating solution3 is accurate (@test_solutions.R#123) --
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
-- 39. Failure: Multifurcating solution3 is accurate (@test_solutions.R#124) --
...[] not equal to 8.
1/1 mismatches
[1] NA - 8 == NA
-- 40. Failure: Multifurcating solution3 is accurate (@test_solutions.R#125) --
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 41. Failure: Multifurcating solution3 is accurate (@test_solutions.R#126) --
...[] not equal to 15.
1/1 mismatches
[1] NA - 15 == NA
-- 42. Failure: Multifurcating solution3 is accurate (@test_solutions.R#127) --
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
-- 43. Failure: Multifurcating solution3 is accurate (@test_solutions.R#128) --
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
-- 44. Failure: Multifurcating solution3 is accurate (@test_solutions.R#129) --
...[] not equal to 20.
1/1 mismatches
[1] NA - 20 == NA
-- 45. Failure: Multifurcating solution3 is accurate (@test_solutions.R#130) --
...[] not equal to 40.
1/1 mismatches
[1] NA - 40 == NA
-- 46. Failure: Multifurcating solution3 is accurate (@test_solutions.R#131) --
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
-- 47. Failure: Multifurcating solution3 is accurate (@test_solutions.R#132) --
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
-- 48. Failure: Multifurcating solution3 is accurate (@test_solutions.R#133) --
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
== testthat results ===========================================================
[ OK: 48 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 48 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-osx-x86_64
Version: 1.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘MonoPhyVignette.Rmd’ using rmarkdown
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ____chkstk_darwin
Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
Expected in: /usr/lib/libSystem.B.dylib
Error: processing vignette 'MonoPhyVignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘MonoPhyVignette.Rmd’
SUMMARY: processing the following file failed:
‘MonoPhyVignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-osx-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [9s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
── 1. Failure: Regular solution is accurate (@test_solutions.R#11) ────────────
...[] not equal to 32.
1/1 mismatches
[1] NA - 32 == NA
── 2. Failure: Regular solution is accurate (@test_solutions.R#12) ────────────
...[] not equal to 9.
1/1 mismatches
[1] NA - 9 == NA
── 3. Failure: Regular solution is accurate (@test_solutions.R#13) ────────────
...[] not equal to 6.
1/1 mismatches
[1] NA - 6 == NA
── 4. Failure: Regular solution is accurate (@test_solutions.R#14) ────────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 5. Failure: Regular solution is accurate (@test_solutions.R#15) ────────────
...[] not equal to 7.
1/1 mismatches
[1] NA - 7 == NA
── 6. Failure: Regular solution is accurate (@test_solutions.R#16) ────────────
...[] not equal to 1.
1/1 mismatches
[1] NA - 1 == NA
── 7. Failure: Regular solution is accurate (@test_solutions.R#17) ────────────
...[] not equal to 77.
1/1 mismatches
[1] NA - 77 == NA
── 8. Failure: Regular solution is accurate (@test_solutions.R#18) ────────────
...[] not equal to 25.
1/1 mismatches
[1] NA - 25 == NA
── 9. Failure: Regular solution is accurate (@test_solutions.R#19) ────────────
...[] not equal to 35.
1/1 mismatches
[1] NA - 35 == NA
── 10. Failure: Regular solution is accurate (@test_solutions.R#20) ───────────
...[] not equal to 17.
1/1 mismatches
[1] NA - 17 == NA
── 11. Failure: Regular solution is accurate (@test_solutions.R#21) ───────────
...[] not equal to 11.
1/1 mismatches
[1] NA - 11 == NA
── 12. Failure: Regular solution is accurate (@test_solutions.R#22) ───────────
...[] not equal to 2.
1/1 mismatches
[1] NA - 2 == NA
── 13. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 14. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 15. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 15 ]
1. Failure: Regular solution is accurate (@test_solutions.R#11)
2. Failure: Regular solution is accurate (@test_solutions.R#12)
3. Failure: Regular solution is accurate (@test_solutions.R#13)
4. Failure: Regular solution is accurate (@test_solutions.R#14)
5. Failure: Regular solution is accurate (@test_solutions.R#15)
6. Failure: Regular solution is accurate (@test_solutions.R#16)
7. Failure: Regular solution is accurate (@test_solutions.R#17)
8. Failure: Regular solution is accurate (@test_solutions.R#18)
9. Failure: Regular solution is accurate (@test_solutions.R#19)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> test_check("MonoPhy")
Loading required package: MonoPhy
Loading required package: ape
Loading required package: phytools
Loading required package: maps
Loading required package: phangorn
Loading required package: RColorBrewer
Loading required package: taxize
── 1. Error: Multifurcating solution1 is accurate (@test_solutions.R#38) ──────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 2. Error: Multifurcating solution2 is accurate (@test_solutions.R#75) ──────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
── 3. Error: Multifurcating solution3 is accurate (@test_solutions.R#112) ─────
there is no package called 'spacodiR'
Backtrace:
1. base::library(spacodiR)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 24 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 3 ]
1. Error: Multifurcating solution1 is accurate (@test_solutions.R#38)
2. Error: Multifurcating solution2 is accurate (@test_solutions.R#75)
3. Error: Multifurcating solution3 is accurate (@test_solutions.R#112)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-linux-x86_64